Difference between revisions of "NONHSAT026067"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>AGGAAAGGGCCCTGACAAGAGGATGGGACTGCAGTTGTGGCTGCCAGGGCCCCGGCCAGGGTGAAAACAAGGAACATTCCAGAGAAGATCACAAGGATGCGAATAAAATCGGAGCTGCACAGGGATCTTTGGGCTGTAATAGGAGGGGACACACAGGGGTTAGGGGAGGGTCTAGCCCTTGGCTCCCTCAGCCCAGCCCTCCTGTCACCTTGCCTCTCCCCTTTCCCCCACCTTATTCTATCCCACCCGCCACCGTTGGCCAACTCCTCTCCTAAACAGTGGACTCTGCTTTTTCCCCTCCTCTTATCCCTAATCCTAGGAGCTTTCTGTCTGGCTTCCCTCCTGGCCCCTCGTGTATGCATTCTCTCTAGCGGTGGGGATTAAGGAGAAAACTCACGTGGCCAGTGGGTAGAGAGAGTCCGGGCAGGCAGCTGCCTGAAGTCAGCCAGAGTCTGCATGTGCCCAGCTGTCCTGGCCTCCAGCATCTCTGGAAAAACAGAGACAGAATGAGTAGCAGCAGGGGACCCCATAGGGCACATCTGAAGGCCTGAGAGGTGCTGGATGGGATGGGAAGGCAGAAACAGGCTGACCTTATCTAGGGGTAGGAGTGGGGAGTACTGGTTGGGGTATCACCGCTACCCCACGTGATGGCACAGAGAGTTGCCTGGAACTTACCACTGACATAAGagtcttgctttgtcgcccaggttggagtgcagtggcacgatctcggctcagtgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctccctagtagctgggattacaggtagacccagtgtaatcacaagcatccttgtaagtggcaaagaggcagaggagacagcgccagagaggcagctgcatgagaaggatcaagatgttgctgactttgaagttggaagaagaaggccatgagcctcagtatgtgggcggcttctagaagctggaaggggcaaggagatggatttgacccttcagcctccaggggcagctgtacctgccatcactgattgtagcctggtgaggcctgttttagacttctgacctgtagagctgtaacataatacatttgggttgttttcaaccactaagtttgtggtaatttgttgtagcagctgtagaaaatgaatacatatgaatcctctggcatttgtttgagatttgctctatggcctagtatgtggttgtaaatgttccatctgtgcctgaaaaaatgtatattTCTAATTCAGTAGTCTCTGCTTTTTTTTTTTATTTTGTACCCCATCAATAAAATGATTTTCAGCATGTATCCCCAAATAAACAATATTTTATTTATTGATTGATTGATAAACAGACATGTTTAATGATAGCTTGCTTTTCACAGAGGTGACTTCGGAGACTTCTAATCTATAATCCAGGAGTATATAACCATGCAGCACAGACCAATTAGTCACATGTAAAATAAACTAGATTCTTACCAC</dnaseq>|
 
sequence = <dnaseq>AGGAAAGGGCCCTGACAAGAGGATGGGACTGCAGTTGTGGCTGCCAGGGCCCCGGCCAGGGTGAAAACAAGGAACATTCCAGAGAAGATCACAAGGATGCGAATAAAATCGGAGCTGCACAGGGATCTTTGGGCTGTAATAGGAGGGGACACACAGGGGTTAGGGGAGGGTCTAGCCCTTGGCTCCCTCAGCCCAGCCCTCCTGTCACCTTGCCTCTCCCCTTTCCCCCACCTTATTCTATCCCACCCGCCACCGTTGGCCAACTCCTCTCCTAAACAGTGGACTCTGCTTTTTCCCCTCCTCTTATCCCTAATCCTAGGAGCTTTCTGTCTGGCTTCCCTCCTGGCCCCTCGTGTATGCATTCTCTCTAGCGGTGGGGATTAAGGAGAAAACTCACGTGGCCAGTGGGTAGAGAGAGTCCGGGCAGGCAGCTGCCTGAAGTCAGCCAGAGTCTGCATGTGCCCAGCTGTCCTGGCCTCCAGCATCTCTGGAAAAACAGAGACAGAATGAGTAGCAGCAGGGGACCCCATAGGGCACATCTGAAGGCCTGAGAGGTGCTGGATGGGATGGGAAGGCAGAAACAGGCTGACCTTATCTAGGGGTAGGAGTGGGGAGTACTGGTTGGGGTATCACCGCTACCCCACGTGATGGCACAGAGAGTTGCCTGGAACTTACCACTGACATAAGagtcttgctttgtcgcccaggttggagtgcagtggcacgatctcggctcagtgcaacctccgcctcctgagttcaagtgattctcctgcctcagcctccctagtagctgggattacaggtagacccagtgtaatcacaagcatccttgtaagtggcaaagaggcagaggagacagcgccagagaggcagctgcatgagaaggatcaagatgttgctgactttgaagttggaagaagaaggccatgagcctcagtatgtgggcggcttctagaagctggaaggggcaaggagatggatttgacccttcagcctccaggggcagctgtacctgccatcactgattgtagcctggtgaggcctgttttagacttctgacctgtagagctgtaacataatacatttgggttgttttcaaccactaagtttgtggtaatttgttgtagcagctgtagaaaatgaatacatatgaatcctctggcatttgtttgagatttgctctatggcctagtatgtggttgtaaatgttccatctgtgcctgaaaaaatgtatattTCTAATTCAGTAGTCTCTGCTTTTTTTTTTTATTTTGTACCCCATCAATAAAATGATTTTCAGCATGTATCCCCAAATAAACAATATTTTATTTATTGATTGATTGATAAACAGACATGTTTAATGATAGCTTGCTTTTCACAGAGGTGACTTCGGAGACTTCTAATCTATAATCCAGGAGTATATAACCATGCAGCACAGACCAATTAGTCACATGTAAAATAAACTAGATTCTTACCAC</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:NONHSAG010301]]

Revision as of 06:58, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT026067

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1481 nt

Genomic location

chr12-:6548167..6560681

Exon number

4

Exons

6548167..6548842,6557806..6557923,6559507..6560146,6560635..6560681

Genome context

Sequence
000001 AGGAAAGGGC CCTGACAAGA GGATGGGACT GCAGTTGTGG CTGCCAGGGC CCCGGCCAGG GTGAAAACAA GGAACATTCC 000080
000081 AGAGAAGATC ACAAGGATGC GAATAAAATC GGAGCTGCAC AGGGATCTTT GGGCTGTAAT AGGAGGGGAC ACACAGGGGT 000160
000161 TAGGGGAGGG TCTAGCCCTT GGCTCCCTCA GCCCAGCCCT CCTGTCACCT TGCCTCTCCC CTTTCCCCCA CCTTATTCTA 000240
000241 TCCCACCCGC CACCGTTGGC CAACTCCTCT CCTAAACAGT GGACTCTGCT TTTTCCCCTC CTCTTATCCC TAATCCTAGG 000320
000321 AGCTTTCTGT CTGGCTTCCC TCCTGGCCCC TCGTGTATGC ATTCTCTCTA GCGGTGGGGA TTAAGGAGAA AACTCACGTG 000400
000401 GCCAGTGGGT AGAGAGAGTC CGGGCAGGCA GCTGCCTGAA GTCAGCCAGA GTCTGCATGT GCCCAGCTGT CCTGGCCTCC 000480
000481 AGCATCTCTG GAAAAACAGA GACAGAATGA GTAGCAGCAG GGGACCCCAT AGGGCACATC TGAAGGCCTG AGAGGTGCTG 000560
000561 GATGGGATGG GAAGGCAGAA ACAGGCTGAC CTTATCTAGG GGTAGGAGTG GGGAGTACTG GTTGGGGTAT CACCGCTACC 000640
000641 CCACGTGATG GCACAGAGAG TTGCCTGGAA CTTACCACTG ACATAAGagt cttgctttgt cgcccaggtt ggagtgcagt 000720
000721 ggcacgatct cggctcagtg caacctccgc ctcctgagtt caagtgattc tcctgcctca gcctccctag tagctgggat 000800
000801 tacaggtaga cccagtgtaa tcacaagcat ccttgtaagt ggcaaagagg cagaggagac agcgccagag aggcagctgc 000880
000881 atgagaagga tcaagatgtt gctgactttg aagttggaag aagaaggcca tgagcctcag tatgtgggcg gcttctagaa 000960
000961 gctggaaggg gcaaggagat ggatttgacc cttcagcctc caggggcagc tgtacctgcc atcactgatt gtagcctggt 001040
001041 gaggcctgtt ttagacttct gacctgtaga gctgtaacat aatacatttg ggttgttttc aaccactaag tttgtggtaa 001120
001121 tttgttgtag cagctgtaga aaatgaatac atatgaatcc tctggcattt gtttgagatt tgctctatgg cctagtatgt 001200
001201 ggttgtaaat gttccatctg tgcctgaaaa aatgtatatt TCTAATTCAG TAGTCTCTGC TTTTTTTTTT TATTTTGTAC 001280
001281 CCCATCAATA AAATGATTTT CAGCATGTAT CCCCAAATAA ACAATATTTT ATTTATTGAT TGATTGATAA ACAGACATGT 001360
001361 TTAATGATAG CTTGCTTTTC ACAGAGGTGA CTTCGGAGAC TTCTAATCTA TAATCCAGGA GTATATAACC ATGCAGCACA 001440
001441 GACCAATTAG TCACATGTAA AATAAACTAG ATTCTTACCA C
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Predicted Small Protein

Name NONHSAT026067_smProtein_929:1027
Length 33
Molecular weight 3441.7697
Aromaticity 0.09375
Instability index 79.621875
Isoelectric point 7.86859130859
Runs 5
Runs residual 0.0353954081633
Runs probability 0.0231937820173
Amino acid sequence MSLSMWAASRSWKGQGDGFDPSASRGSCTCHH
Secondary structure LLLLHHHHHHHHLLLLLLLLLLLLLLLEELLL
PRMN -
PiMo -