Difference between revisions of "NONHSAT028477"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>cgcctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacccaggagccagaggttgcagtgagccgagatcgcgccactgcactccagcctgggcaaaaagagcgaaactccatctcaaaaagaaaaaaaGTTAAATTCTCTCCATCATCATGAAGTTGAATATATTTTTTCTATCCACAGGCAAATCTGAGTAGCCTCCAAGAGGCACACAAGCAGAGGATGGGCTGTGTTGCCCTGACTGCCAGCCCCAGGCACAGAGGACCAGGCCTGGTCATCCTCACAGACTCTGACCCTGGCTCTTCCCACTCCTCTTCCACTCCAGGACATCCTACTTAACCCCTCCTGACATGAGTTTCTTGTGCTTTAGTCTACAGGTTAGGAAAGAGGGGAAGTGATAAACAAGCTCTCCAACCTGTTGAGGGATTAGGGGTTCGTCTAAGGCTCCCCAGGGCCTGGCTCTGACAAAGCGTCTGCAACTAATGATGCTTCTTGAGCTCTGGAGACAGGATTTATGCATCTAATAAAGTCTGTAACTCCAGGCTTAGGGGCCGGGGGCAGGAGGCTGAGAGCATGAAGTCCTGGGGGCGCCATGGGAGGAGATCCCAGGTGGCTCCTAATGAGCCCTGCATTTCCATTTGCCTGCTCTAGATTCCCCTAAGGCTACTGTGAGGCTGGGGGTGGGGGAACAGCAGGTATAAGAGGTTGGGGTGGCTGTAGGAGGGTAGGTGGCAGCATGGATTCTAGGCAGGCTGCTGCACTGCTGGTGCTGCTGCTGTTAATAGACGGGGGCTGTGCTGAAGGGCCAGGAGGCCAGCAGGAAGACCAGCTCTCCGCGGTGAGTGTGTGTCCCATCCCCATATCACCATTGCCTCTACTTCGGTTGAGACTTGTGCTCTAGGTTCTGATACTTTCTCTGGCTGCCAAGGTTGTCATTAGGTCCTCACATCTGAGGAAATGGTTCCGCAGCCTCCTACCACTTGCCCCTGGAAGCCAGTCCCTTCCCCTTGTGACTTACGTGTCCAGGGTATTTGCCCATCTTCCTTCCCTGATACCCCCTTGGCACAGGAGGAAGACAGCGAACCCCTCCCACCACAGGATGCCCAGACCTCTGGGTCACTGTTGCACTACCTGCTCCAGGCAATGGAGAGACCTGGCCGGAGCCAAGCCTTCCTGTTTCAGCCCCAGAGGTTTGGCAGAAATACCCAGGGATCCTGGAGGAATGAATGGCTGAGTCCCCGGGCTGGAGAGGGGCTGAATTCCCAGTTCTGGAGCCTGGCTGCCCCTCAACGCTTTGGGAAGAAGTGACATGTCATCCCTTGATATGTCTGCATGCAAGGTCCACACCCAAAAGTGTCAATGTTTGCCCCCCAAATAAAATTGTCTGGCTTCTGAA</dnaseq>| | sequence = <dnaseq>cgcctgtagtcccagctacttgggaggctgaggcaggagaatcacttgaacccaggagccagaggttgcagtgagccgagatcgcgccactgcactccagcctgggcaaaaagagcgaaactccatctcaaaaagaaaaaaaGTTAAATTCTCTCCATCATCATGAAGTTGAATATATTTTTTCTATCCACAGGCAAATCTGAGTAGCCTCCAAGAGGCACACAAGCAGAGGATGGGCTGTGTTGCCCTGACTGCCAGCCCCAGGCACAGAGGACCAGGCCTGGTCATCCTCACAGACTCTGACCCTGGCTCTTCCCACTCCTCTTCCACTCCAGGACATCCTACTTAACCCCTCCTGACATGAGTTTCTTGTGCTTTAGTCTACAGGTTAGGAAAGAGGGGAAGTGATAAACAAGCTCTCCAACCTGTTGAGGGATTAGGGGTTCGTCTAAGGCTCCCCAGGGCCTGGCTCTGACAAAGCGTCTGCAACTAATGATGCTTCTTGAGCTCTGGAGACAGGATTTATGCATCTAATAAAGTCTGTAACTCCAGGCTTAGGGGCCGGGGGCAGGAGGCTGAGAGCATGAAGTCCTGGGGGCGCCATGGGAGGAGATCCCAGGTGGCTCCTAATGAGCCCTGCATTTCCATTTGCCTGCTCTAGATTCCCCTAAGGCTACTGTGAGGCTGGGGGTGGGGGAACAGCAGGTATAAGAGGTTGGGGTGGCTGTAGGAGGGTAGGTGGCAGCATGGATTCTAGGCAGGCTGCTGCACTGCTGGTGCTGCTGCTGTTAATAGACGGGGGCTGTGCTGAAGGGCCAGGAGGCCAGCAGGAAGACCAGCTCTCCGCGGTGAGTGTGTGTCCCATCCCCATATCACCATTGCCTCTACTTCGGTTGAGACTTGTGCTCTAGGTTCTGATACTTTCTCTGGCTGCCAAGGTTGTCATTAGGTCCTCACATCTGAGGAAATGGTTCCGCAGCCTCCTACCACTTGCCCCTGGAAGCCAGTCCCTTCCCCTTGTGACTTACGTGTCCAGGGTATTTGCCCATCTTCCTTCCCTGATACCCCCTTGGCACAGGAGGAAGACAGCGAACCCCTCCCACCACAGGATGCCCAGACCTCTGGGTCACTGTTGCACTACCTGCTCCAGGCAATGGAGAGACCTGGCCGGAGCCAAGCCTTCCTGTTTCAGCCCCAGAGGTTTGGCAGAAATACCCAGGGATCCTGGAGGAATGAATGGCTGAGTCCCCGGGCTGGAGAGGGGCTGAATTCCCAGTTCTGGAGCCTGGCTGCCCCTCAACGCTTTGGGAAGAAGTGACATGTCATCCCTTGATATGTCTGCATGCAAGGTCCACACCCAAAAGTGTCAATGTTTGCCCCCCAAATAAAATTGTCTGGCTTCTGAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG011244]] |
Revision as of 08:04, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT028477 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1406 nt |
| Genomic location |
chr12-:53900472..53902004 |
| Exon number |
2 |
| Exons |
53900472..53900677,53900805..53902004 |
| Genome context |
|
| Sequence |
000001 cgcctgtagt cccagctact tgggaggctg aggcaggaga atcacttgaa cccaggagcc agaggttgca gtgagccgag 000080
000081 atcgcgccac tgcactccag cctgggcaaa aagagcgaaa ctccatctca aaaagaaaaa aaGTTAAATT CTCTCCATCA 000160 000161 TCATGAAGTT GAATATATTT TTTCTATCCA CAGGCAAATC TGAGTAGCCT CCAAGAGGCA CACAAGCAGA GGATGGGCTG 000240 000241 TGTTGCCCTG ACTGCCAGCC CCAGGCACAG AGGACCAGGC CTGGTCATCC TCACAGACTC TGACCCTGGC TCTTCCCACT 000320 000321 CCTCTTCCAC TCCAGGACAT CCTACTTAAC CCCTCCTGAC ATGAGTTTCT TGTGCTTTAG TCTACAGGTT AGGAAAGAGG 000400 000401 GGAAGTGATA AACAAGCTCT CCAACCTGTT GAGGGATTAG GGGTTCGTCT AAGGCTCCCC AGGGCCTGGC TCTGACAAAG 000480 000481 CGTCTGCAAC TAATGATGCT TCTTGAGCTC TGGAGACAGG ATTTATGCAT CTAATAAAGT CTGTAACTCC AGGCTTAGGG 000560 000561 GCCGGGGGCA GGAGGCTGAG AGCATGAAGT CCTGGGGGCG CCATGGGAGG AGATCCCAGG TGGCTCCTAA TGAGCCCTGC 000640 000641 ATTTCCATTT GCCTGCTCTA GATTCCCCTA AGGCTACTGT GAGGCTGGGG GTGGGGGAAC AGCAGGTATA AGAGGTTGGG 000720 000721 GTGGCTGTAG GAGGGTAGGT GGCAGCATGG ATTCTAGGCA GGCTGCTGCA CTGCTGGTGC TGCTGCTGTT AATAGACGGG 000800 000801 GGCTGTGCTG AAGGGCCAGG AGGCCAGCAG GAAGACCAGC TCTCCGCGGT GAGTGTGTGT CCCATCCCCA TATCACCATT 000880 000881 GCCTCTACTT CGGTTGAGAC TTGTGCTCTA GGTTCTGATA CTTTCTCTGG CTGCCAAGGT TGTCATTAGG TCCTCACATC 000960 000961 TGAGGAAATG GTTCCGCAGC CTCCTACCAC TTGCCCCTGG AAGCCAGTCC CTTCCCCTTG TGACTTACGT GTCCAGGGTA 001040 001041 TTTGCCCATC TTCCTTCCCT GATACCCCCT TGGCACAGGA GGAAGACAGC GAACCCCTCC CACCACAGGA TGCCCAGACC 001120 001121 TCTGGGTCAC TGTTGCACTA CCTGCTCCAG GCAATGGAGA GACCTGGCCG GAGCCAAGCC TTCCTGTTTC AGCCCCAGAG 001200 001201 GTTTGGCAGA AATACCCAGG GATCCTGGAG GAATGAATGG CTGAGTCCCC GGGCTGGAGA GGGGCTGAAT TCCCAGTTCT 001280 001281 GGAGCCTGGC TGCCCCTCAA CGCTTTGGGA AGAAGTGACA TGTCATCCCT TGATATGTCT GCATGCAAGG TCCACACCCA 001360 001361 AAAGTGTCAA TGTTTGCCCC CCAAATAAAA TTGTCTGGCT TCTGAA |
Predicted Small Protein
| Name | NONHSAT028477_smProtein_746:910 |
| Length | 55 |
| Molecular weight | 5621.638 |
| Aromaticity | 0.0 |
| Instability index | 57.6555555556 |
| Isoelectric point | 4.43682861328 |
| Runs | 9 |
| Runs residual | 0.00397470641373 |
| Runs probability | 0.0237786806414 |
| Amino acid sequence | MDSRQAAALLVLLLLIDGGCAEGPGGQQEDQLSAVSVCPIPISPLPLLRLRLVL |
| Secondary structure | LLHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHLLEEELLLLLLLLHHHHHHLLL |
| PRMN | - |
| PiMo | - |
