Difference between revisions of "NONHSAT030590"

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sequence = <dnaseq>CAGCAGTTATTATGGCAAAACTACTAGTTTAACTTAGGTTTTTCCCAAAAGAAGCTACTTACTTTGAAAATAAAACTAGAAATCAGATTATTGGGCTGCTACTTAATGCATAATAATTTACAAAATGAAGAAGTCAGGTTAAAAGGCTTTGCACAGCTATTGTTCACATTTACAGCCTTGGCTCAAACCCTGGTCTCTGACCAAAGAAAGATCTGCTTATAACCATATATTCCAAGGCTCAGCCCCTTTTCTCTATCTTTCTTTGATGGTAGATTTCAGAGTAAGCAGTGGCAGAACAGCAATTACTTAAAGCTACAGCTTTGCAGTACACTTTAAGGTCACATGATTGGGCATTTGTTCCACCAGACTTGGGTAAAACAAGTGTGTTCATTTCAACATCAAAGTCAAGGTCTGCATCGGGTGAGTGCAGGACGGACCGTACAGTTCAAGCTGCCCCTTGCACCCTGACGCCCAGAGCCTGGAGAGCCTGCACAGAATATTCTGTTGAGAGTGAGTTACTGAGTCCTCAGGGTGCAGCCTGGGCCCAGCAGAAGAGTGATCACCTGGGCTTCCTGCACTGTGAGCTGCTGCCAAGGCACTGTTTGGTGTGTCTGCCAGCTCACCCCCAGCAGAGGAAGTGCGGTCTTAGCCTTACCTCAGATGACCTTTTGGAAAGGTCTGATTCCAAATCTTACCTCTGATGAGTCGGTTTGAATTTGGTATCCATTTTTCTAAATTAAAAATATAGCTTAAAACATAGGTACTACTGTGTCATCAAAATTCCTTTGGCCCTGGGCTGCATTCAGAGACTTACCTGAAAAGGGAAGAAAGTGCTCAATATATACTTTTTGTATTAGGCTATTGGAAATGAATAAATTCAGAATATGGACCTAGAGCAACATGACAATACTAGATGCCAGCTGTAGTTATATGTTTTTTAAAAAGTCAAAAGCTGCTTTCTCCTTTTCGTGAAAAGGGCTgaactttggtggtcatcaaatctaacccttcacttcacaaatgaggaaactgaggttcagagagACTGCAGCCCCATAGTCAGCCCTTCCTTCCTAAGCCAGGTGTCAACTCAGGGCAGGGATTATTTTTTTATACAGCCCCAAGCTCCCACCTGTAAACCTTAAGAGCTCTGCATGGGCAATAAATAAACAGATGAAAGTAACCGTCCACAGTGGATCCTTGTGTAAGAAAAAGTTTTCCACAGAGCAGAGGAATCAGGTGTTGCAAAGATCCAGCTCAGTTCTGGCTATTCACAGAGTTTTATAATACAGTGTAATTACATCTCAGTCCAATATACAAAAGATAAAAGCAACAAGTAAGCTCTTCACTTATAACTGACAAAGTAGTGAAAGAGTTTCCCCAGGGGGCAGATTTGGCAGATGAGCCTTTACTCCATAGAAAGAATTGAAAGATTAGAAAAGGCATAGAAAAAGGAAGGTGTTCTTTAGGCATCATTTACCTGTTCTCTTGCTATCCTTTGAGTAGCCTGGAAGGAATATTTCACAATGGACGTGCTACAAAAGCAATCGAAAGTGAAAGGCACTTTTTCTTCTAAATTGTTGCCTTTAATAATTTCATTAATTCTTGTCAACAATTTTTATGGGCCTGCTTATTAAAAATAAAAGATCTAAGTGGAAACGTTGATTAGACAAAGGTACCTCCCCTCTGAGAACACCTAACATTACAATATGAAAACGGTGGCTTCAAGAATCTGAGTTCTTTTAATTACCTGTATCAGATGAGTAAAAAGACACTCCGGACATAATGAATGCTTTCTTAACACAACAGAACCACCTACACACATGAACAGGACTGTTCAGGGAGCCTGGTTTGGTGTGAACTGGGGCTGGCTCCCAGGTGGAGCCTGCTCTTAGAACACACCAGAAGGCTGGAAGGCTCTAGTGGGGCCGCTTGCACACGCAACAGTACAGTTTTACTTTTTTCCTGGACAGTGCAGACAGTGCCATCAGCTCTAGCCTTGCAGGAGGGCACAGTCATTCTTCAGACTTGCACTCCTGGCTCTGGTGCTGCATCCTGGAAAGGACGCGCTCGTAGAACAGCAGGTAGGCGCTGGAGGACAGGACCTCCTGCAGGCTGGCCTTGCGGACAGTGTCATCGGAGACCCACAGCCACTGATTGCTAGTTGAGAGAGGGTTCCTGGCAGAAGGTGGGGACCGTCGGTAAGTGACAAAGTGTCCAGAGTGCATGTCTCCATGGTGGACGACAACTGCCATCAGCCGGAAGAGTCTTAAGAAAACAACAATTTCCTCCTAAGGATGACTGTGGTAATATGCAATA</dnaseq>|
 
sequence = <dnaseq>CAGCAGTTATTATGGCAAAACTACTAGTTTAACTTAGGTTTTTCCCAAAAGAAGCTACTTACTTTGAAAATAAAACTAGAAATCAGATTATTGGGCTGCTACTTAATGCATAATAATTTACAAAATGAAGAAGTCAGGTTAAAAGGCTTTGCACAGCTATTGTTCACATTTACAGCCTTGGCTCAAACCCTGGTCTCTGACCAAAGAAAGATCTGCTTATAACCATATATTCCAAGGCTCAGCCCCTTTTCTCTATCTTTCTTTGATGGTAGATTTCAGAGTAAGCAGTGGCAGAACAGCAATTACTTAAAGCTACAGCTTTGCAGTACACTTTAAGGTCACATGATTGGGCATTTGTTCCACCAGACTTGGGTAAAACAAGTGTGTTCATTTCAACATCAAAGTCAAGGTCTGCATCGGGTGAGTGCAGGACGGACCGTACAGTTCAAGCTGCCCCTTGCACCCTGACGCCCAGAGCCTGGAGAGCCTGCACAGAATATTCTGTTGAGAGTGAGTTACTGAGTCCTCAGGGTGCAGCCTGGGCCCAGCAGAAGAGTGATCACCTGGGCTTCCTGCACTGTGAGCTGCTGCCAAGGCACTGTTTGGTGTGTCTGCCAGCTCACCCCCAGCAGAGGAAGTGCGGTCTTAGCCTTACCTCAGATGACCTTTTGGAAAGGTCTGATTCCAAATCTTACCTCTGATGAGTCGGTTTGAATTTGGTATCCATTTTTCTAAATTAAAAATATAGCTTAAAACATAGGTACTACTGTGTCATCAAAATTCCTTTGGCCCTGGGCTGCATTCAGAGACTTACCTGAAAAGGGAAGAAAGTGCTCAATATATACTTTTTGTATTAGGCTATTGGAAATGAATAAATTCAGAATATGGACCTAGAGCAACATGACAATACTAGATGCCAGCTGTAGTTATATGTTTTTTAAAAAGTCAAAAGCTGCTTTCTCCTTTTCGTGAAAAGGGCTgaactttggtggtcatcaaatctaacccttcacttcacaaatgaggaaactgaggttcagagagACTGCAGCCCCATAGTCAGCCCTTCCTTCCTAAGCCAGGTGTCAACTCAGGGCAGGGATTATTTTTTTATACAGCCCCAAGCTCCCACCTGTAAACCTTAAGAGCTCTGCATGGGCAATAAATAAACAGATGAAAGTAACCGTCCACAGTGGATCCTTGTGTAAGAAAAAGTTTTCCACAGAGCAGAGGAATCAGGTGTTGCAAAGATCCAGCTCAGTTCTGGCTATTCACAGAGTTTTATAATACAGTGTAATTACATCTCAGTCCAATATACAAAAGATAAAAGCAACAAGTAAGCTCTTCACTTATAACTGACAAAGTAGTGAAAGAGTTTCCCCAGGGGGCAGATTTGGCAGATGAGCCTTTACTCCATAGAAAGAATTGAAAGATTAGAAAAGGCATAGAAAAAGGAAGGTGTTCTTTAGGCATCATTTACCTGTTCTCTTGCTATCCTTTGAGTAGCCTGGAAGGAATATTTCACAATGGACGTGCTACAAAAGCAATCGAAAGTGAAAGGCACTTTTTCTTCTAAATTGTTGCCTTTAATAATTTCATTAATTCTTGTCAACAATTTTTATGGGCCTGCTTATTAAAAATAAAAGATCTAAGTGGAAACGTTGATTAGACAAAGGTACCTCCCCTCTGAGAACACCTAACATTACAATATGAAAACGGTGGCTTCAAGAATCTGAGTTCTTTTAATTACCTGTATCAGATGAGTAAAAAGACACTCCGGACATAATGAATGCTTTCTTAACACAACAGAACCACCTACACACATGAACAGGACTGTTCAGGGAGCCTGGTTTGGTGTGAACTGGGGCTGGCTCCCAGGTGGAGCCTGCTCTTAGAACACACCAGAAGGCTGGAAGGCTCTAGTGGGGCCGCTTGCACACGCAACAGTACAGTTTTACTTTTTTCCTGGACAGTGCAGACAGTGCCATCAGCTCTAGCCTTGCAGGAGGGCACAGTCATTCTTCAGACTTGCACTCCTGGCTCTGGTGCTGCATCCTGGAAAGGACGCGCTCGTAGAACAGCAGGTAGGCGCTGGAGGACAGGACCTCCTGCAGGCTGGCCTTGCGGACAGTGTCATCGGAGACCCACAGCCACTGATTGCTAGTTGAGAGAGGGTTCCTGGCAGAAGGTGGGGACCGTCGGTAAGTGACAAAGTGTCCAGAGTGCATGTCTCCATGGTGGACGACAACTGCCATCAGCCGGAAGAGTCTTAAGAAAACAACAATTTCCTCCTAAGGATGACTGTGGTAATATGCAATA</dnaseq>|
 
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[[Category:Antisense]]
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[[Category:Antisense]][[Category:NONHSAG012232]]

Revision as of 09:07, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT030590

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2319 nt

Genomic location

chr12-:109510482..109525751

Exon number

2

Exons

109510482..109510533,109523485..109525751

Genome context

Sequence
000001 CAGCAGTTAT TATGGCAAAA CTACTAGTTT AACTTAGGTT TTTCCCAAAA GAAGCTACTT ACTTTGAAAA TAAAACTAGA 000080
000081 AATCAGATTA TTGGGCTGCT ACTTAATGCA TAATAATTTA CAAAATGAAG AAGTCAGGTT AAAAGGCTTT GCACAGCTAT 000160
000161 TGTTCACATT TACAGCCTTG GCTCAAACCC TGGTCTCTGA CCAAAGAAAG ATCTGCTTAT AACCATATAT TCCAAGGCTC 000240
000241 AGCCCCTTTT CTCTATCTTT CTTTGATGGT AGATTTCAGA GTAAGCAGTG GCAGAACAGC AATTACTTAA AGCTACAGCT 000320
000321 TTGCAGTACA CTTTAAGGTC ACATGATTGG GCATTTGTTC CACCAGACTT GGGTAAAACA AGTGTGTTCA TTTCAACATC 000400
000401 AAAGTCAAGG TCTGCATCGG GTGAGTGCAG GACGGACCGT ACAGTTCAAG CTGCCCCTTG CACCCTGACG CCCAGAGCCT 000480
000481 GGAGAGCCTG CACAGAATAT TCTGTTGAGA GTGAGTTACT GAGTCCTCAG GGTGCAGCCT GGGCCCAGCA GAAGAGTGAT 000560
000561 CACCTGGGCT TCCTGCACTG TGAGCTGCTG CCAAGGCACT GTTTGGTGTG TCTGCCAGCT CACCCCCAGC AGAGGAAGTG 000640
000641 CGGTCTTAGC CTTACCTCAG ATGACCTTTT GGAAAGGTCT GATTCCAAAT CTTACCTCTG ATGAGTCGGT TTGAATTTGG 000720
000721 TATCCATTTT TCTAAATTAA AAATATAGCT TAAAACATAG GTACTACTGT GTCATCAAAA TTCCTTTGGC CCTGGGCTGC 000800
000801 ATTCAGAGAC TTACCTGAAA AGGGAAGAAA GTGCTCAATA TATACTTTTT GTATTAGGCT ATTGGAAATG AATAAATTCA 000880
000881 GAATATGGAC CTAGAGCAAC ATGACAATAC TAGATGCCAG CTGTAGTTAT ATGTTTTTTA AAAAGTCAAA AGCTGCTTTC 000960
000961 TCCTTTTCGT GAAAAGGGCT gaactttggt ggtcatcaaa tctaaccctt cacttcacaa atgaggaaac tgaggttcag 001040
001041 agagACTGCA GCCCCATAGT CAGCCCTTCC TTCCTAAGCC AGGTGTCAAC TCAGGGCAGG GATTATTTTT TTATACAGCC 001120
001121 CCAAGCTCCC ACCTGTAAAC CTTAAGAGCT CTGCATGGGC AATAAATAAA CAGATGAAAG TAACCGTCCA CAGTGGATCC 001200
001201 TTGTGTAAGA AAAAGTTTTC CACAGAGCAG AGGAATCAGG TGTTGCAAAG ATCCAGCTCA GTTCTGGCTA TTCACAGAGT 001280
001281 TTTATAATAC AGTGTAATTA CATCTCAGTC CAATATACAA AAGATAAAAG CAACAAGTAA GCTCTTCACT TATAACTGAC 001360
001361 AAAGTAGTGA AAGAGTTTCC CCAGGGGGCA GATTTGGCAG ATGAGCCTTT ACTCCATAGA AAGAATTGAA AGATTAGAAA 001440
001441 AGGCATAGAA AAAGGAAGGT GTTCTTTAGG CATCATTTAC CTGTTCTCTT GCTATCCTTT GAGTAGCCTG GAAGGAATAT 001520
001521 TTCACAATGG ACGTGCTACA AAAGCAATCG AAAGTGAAAG GCACTTTTTC TTCTAAATTG TTGCCTTTAA TAATTTCATT 001600
001601 AATTCTTGTC AACAATTTTT ATGGGCCTGC TTATTAAAAA TAAAAGATCT AAGTGGAAAC GTTGATTAGA CAAAGGTACC 001680
001681 TCCCCTCTGA GAACACCTAA CATTACAATA TGAAAACGGT GGCTTCAAGA ATCTGAGTTC TTTTAATTAC CTGTATCAGA 001760
001761 TGAGTAAAAA GACACTCCGG ACATAATGAA TGCTTTCTTA ACACAACAGA ACCACCTACA CACATGAACA GGACTGTTCA 001840
001841 GGGAGCCTGG TTTGGTGTGA ACTGGGGCTG GCTCCCAGGT GGAGCCTGCT CTTAGAACAC ACCAGAAGGC TGGAAGGCTC 001920
001921 TAGTGGGGCC GCTTGCACAC GCAACAGTAC AGTTTTACTT TTTTCCTGGA CAGTGCAGAC AGTGCCATCA GCTCTAGCCT 002000
002001 TGCAGGAGGG CACAGTCATT CTTCAGACTT GCACTCCTGG CTCTGGTGCT GCATCCTGGA AAGGACGCGC TCGTAGAACA 002080
002081 GCAGGTAGGC GCTGGAGGAC AGGACCTCCT GCAGGCTGGC CTTGCGGACA GTGTCATCGG AGACCCACAG CCACTGATTG 002160
002161 CTAGTTGAGA GAGGGTTCCT GGCAGAAGGT GGGGACCGTC GGTAAGTGAC AAAGTGTCCA GAGTGCATGT CTCCATGGTG 002240
002241 GACGACAACT GCCATCAGCC GGAAGAGTCT TAAGAAAACA ACAATTTCCT CCTAAGGATG ACTGTGGTAA TATGCAATA
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Predicted Small Protein

Name NONHSAT030590_smProtein_1526:1636
Length 37
Molecular weight 4026.7809
Aromaticity 0.111111111111
Instability index 54.6669444444
Isoelectric point 9.69964599609
Runs 7
Runs residual 0.013986013986
Runs probability 0.0311025311025
Amino acid sequence MDVLQKQSKVKGTFSSKLLPLIISLILVNNFYGPAY
Secondary structure LLHHHHLLLEEELLLHHHHHHHHHHHHHHLLLLLLL
PRMN -
PiMo -