Difference between revisions of "NONHSAT034120"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ACATGGAGATCAAAATACCTTTACTATGGCTAAAGCTGATTGAAAATCTTGGCATAGATATGGAATAAATATTAATGTCTCCAAAATCTTCTCAAAATTTATACTATGGCACAAACAAGTTAAATGTAGGTCTCTTCCTCACCATCTATCTTAGGTCTCTTTCTCATATTTTCCTCCAATCTCTACTGCTGGGAAGGCGAGGGACATGGAGGGGAGAGATCACCTCAAGTAGGCACAGGATTCAAAGATGAGTGAAGCATAGCATCTTTCCTGCATAAACATTTAAAAAAGGAGAAAGTGAGAGAGAGGAGTCTTCCATCCACTTCTAAATAGAACAAAATGATATCTCAGTGCCCTTAACTTTGAAACTGAAACAGAGCTTCTAGATCATCTCAAGATTTTGCAGCTTTGGAGAAAGCAAGCTGTAGGACTCATGGCATAGTGAGCAGCATTTTTGCCATGAGCGTCTGCATTAGGAAAATCTGGAGACTGCCGTCTCAAAGGGCTCCTTGGGCCATGGATCACTGCTCAGGGGATGGGAGGAGGCAAGTCTAGGAGGGCCTGCCTGTGAGCTCAGGTGAGATGCCCTTGAGGCCACTAGGGAGAAGGTGGGCCAGAGTCATTGATGGGATTTGAATAGTGAAGGGGTTAATAAGCCAATGAAATGTGGATTGCTCAACTTAATATAAGCACATAAGTACTGTGTGAGGAAAAACAAACTGTGGAGAAAATAGATTTTCCTCTGCTCTCATCCCACAACAATGAACACAGAAGACTTCTGTGACCAAATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCACTTCAATCCTGACACCATCTACCTGGAGATAGCATCAGATACCGCAGGTTGGGGGCTCAGTCCCACAAGACTGCCCTCGACTTTGGATGCCAATCACAAGCCCCAGGTTTTTATATCTGTGCTTCTGACTGGCTGTAAATAGAAGTTCCCAAAATTCCCTTCTCCTGTTCGATTAGTTTGCTAGAGTGGCTCACAGAACTTGTTACAGGTAGTTAGACAGGCATGAGTGGGGCAGGAGAGGGTCCTCCCTCACCTACTAGGAATGTTGGGTGATGGTTTGGCAATTATCACATTGCCTCTCTAAAAGTGATAAGTTGCCAGCCGGTGCCAGGGAAAGGCCACTTCCTGATGATCTACACCTGTTGCACTAAAGTGTTAATTGAATGCAGATGCCAGTGGGGAGCAAATTTCTGGGCATGCACATTAAGAGACAAAATGGCTGAGTATGATCTTCCAGGCACACTCCACCAGAAAAGGGAAGAAAAGCCTCAGATGGGCATGTGTACAACTTCCTAAACACACTGCATGTGGTCATTTTCCAAGCATAAGGAGGGTACTGTGCATGCAGGCAGCCCACCCTAAGGTAGAATCATGGGAAAGGGGCCAGCCTATAAAGTCCTAGGATCCAGGTTAAAGACCACACTTGTTCTTCAAGTCACATGCTTGGGTCTCTTCCAAGCACACTTTCTTTTCTGTTCTAAAGCTTTTTAAAATAAGCTTCCACTGCTGCTCTG</dnaseq>| | sequence = <dnaseq>ACATGGAGATCAAAATACCTTTACTATGGCTAAAGCTGATTGAAAATCTTGGCATAGATATGGAATAAATATTAATGTCTCCAAAATCTTCTCAAAATTTATACTATGGCACAAACAAGTTAAATGTAGGTCTCTTCCTCACCATCTATCTTAGGTCTCTTTCTCATATTTTCCTCCAATCTCTACTGCTGGGAAGGCGAGGGACATGGAGGGGAGAGATCACCTCAAGTAGGCACAGGATTCAAAGATGAGTGAAGCATAGCATCTTTCCTGCATAAACATTTAAAAAAGGAGAAAGTGAGAGAGAGGAGTCTTCCATCCACTTCTAAATAGAACAAAATGATATCTCAGTGCCCTTAACTTTGAAACTGAAACAGAGCTTCTAGATCATCTCAAGATTTTGCAGCTTTGGAGAAAGCAAGCTGTAGGACTCATGGCATAGTGAGCAGCATTTTTGCCATGAGCGTCTGCATTAGGAAAATCTGGAGACTGCCGTCTCAAAGGGCTCCTTGGGCCATGGATCACTGCTCAGGGGATGGGAGGAGGCAAGTCTAGGAGGGCCTGCCTGTGAGCTCAGGTGAGATGCCCTTGAGGCCACTAGGGAGAAGGTGGGCCAGAGTCATTGATGGGATTTGAATAGTGAAGGGGTTAATAAGCCAATGAAATGTGGATTGCTCAACTTAATATAAGCACATAAGTACTGTGTGAGGAAAAACAAACTGTGGAGAAAATAGATTTTCCTCTGCTCTCATCCCACAACAATGAACACAGAAGACTTCTGTGACCAAATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCACTTCAATCCTGACACCATCTACCTGGAGATAGCATCAGATACCGCAGGTTGGGGGCTCAGTCCCACAAGACTGCCCTCGACTTTGGATGCCAATCACAAGCCCCAGGTTTTTATATCTGTGCTTCTGACTGGCTGTAAATAGAAGTTCCCAAAATTCCCTTCTCCTGTTCGATTAGTTTGCTAGAGTGGCTCACAGAACTTGTTACAGGTAGTTAGACAGGCATGAGTGGGGCAGGAGAGGGTCCTCCCTCACCTACTAGGAATGTTGGGTGATGGTTTGGCAATTATCACATTGCCTCTCTAAAAGTGATAAGTTGCCAGCCGGTGCCAGGGAAAGGCCACTTCCTGATGATCTACACCTGTTGCACTAAAGTGTTAATTGAATGCAGATGCCAGTGGGGAGCAAATTTCTGGGCATGCACATTAAGAGACAAAATGGCTGAGTATGATCTTCCAGGCACACTCCACCAGAAAAGGGAAGAAAAGCCTCAGATGGGCATGTGTACAACTTCCTAAACACACTGCATGTGGTCATTTTCCAAGCATAAGGAGGGTACTGTGCATGCAGGCAGCCCACCCTAAGGTAGAATCATGGGAAAGGGGCCAGCCTATAAAGTCCTAGGATCCAGGTTAAAGACCACACTTGTTCTTCAAGTCACATGCTTGGGTCTCTTCCAAGCACACTTTCTTTTCTGTTCTAAAGCTTTTTAAAATAAGCTTCCACTGCTGCTCTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG013655]] |
Revision as of 10:22, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034120 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1600 nt |
Genomic location |
chr13+:61491135..61515902 |
Exon number |
2 |
Exons |
61491135..61491372,61514541..61515902 |
Genome context |
|
Sequence |
000001 ACATGGAGAT CAAAATACCT TTACTATGGC TAAAGCTGAT TGAAAATCTT GGCATAGATA TGGAATAAAT ATTAATGTCT 000080
000081 CCAAAATCTT CTCAAAATTT ATACTATGGC ACAAACAAGT TAAATGTAGG TCTCTTCCTC ACCATCTATC TTAGGTCTCT 000160 000161 TTCTCATATT TTCCTCCAAT CTCTACTGCT GGGAAGGCGA GGGACATGGA GGGGAGAGAT CACCTCAAGT AGGCACAGGA 000240 000241 TTCAAAGATG AGTGAAGCAT AGCATCTTTC CTGCATAAAC ATTTAAAAAA GGAGAAAGTG AGAGAGAGGA GTCTTCCATC 000320 000321 CACTTCTAAA TAGAACAAAA TGATATCTCA GTGCCCTTAA CTTTGAAACT GAAACAGAGC TTCTAGATCA TCTCAAGATT 000400 000401 TTGCAGCTTT GGAGAAAGCA AGCTGTAGGA CTCATGGCAT AGTGAGCAGC ATTTTTGCCA TGAGCGTCTG CATTAGGAAA 000480 000481 ATCTGGAGAC TGCCGTCTCA AAGGGCTCCT TGGGCCATGG ATCACTGCTC AGGGGATGGG AGGAGGCAAG TCTAGGAGGG 000560 000561 CCTGCCTGTG AGCTCAGGTG AGATGCCCTT GAGGCCACTA GGGAGAAGGT GGGCCAGAGT CATTGATGGG ATTTGAATAG 000640 000641 TGAAGGGGTT AATAAGCCAA TGAAATGTGG ATTGCTCAAC TTAATATAAG CACATAAGTA CTGTGTGAGG AAAAACAAAC 000720 000721 TGTGGAGAAA ATAGATTTTC CTCTGCTCTC ATCCCACAAC AATGAACACA GAAGACTTCT GTGACCAAAT GTGGGTCCTC 000800 000801 CGCTGCACCC CACACACCAA GCAAGTGATC AATTCTGCAG TGGACACCAG CATTCGGTAT CCTCCACTTC AATCCTGACA 000880 000881 CCATCTACCT GGAGATAGCA TCAGATACCG CAGGTTGGGG GCTCAGTCCC ACAAGACTGC CCTCGACTTT GGATGCCAAT 000960 000961 CACAAGCCCC AGGTTTTTAT ATCTGTGCTT CTGACTGGCT GTAAATAGAA GTTCCCAAAA TTCCCTTCTC CTGTTCGATT 001040 001041 AGTTTGCTAG AGTGGCTCAC AGAACTTGTT ACAGGTAGTT AGACAGGCAT GAGTGGGGCA GGAGAGGGTC CTCCCTCACC 001120 001121 TACTAGGAAT GTTGGGTGAT GGTTTGGCAA TTATCACATT GCCTCTCTAA AAGTGATAAG TTGCCAGCCG GTGCCAGGGA 001200 001201 AAGGCCACTT CCTGATGATC TACACCTGTT GCACTAAAGT GTTAATTGAA TGCAGATGCC AGTGGGGAGC AAATTTCTGG 001280 001281 GCATGCACAT TAAGAGACAA AATGGCTGAG TATGATCTTC CAGGCACACT CCACCAGAAA AGGGAAGAAA AGCCTCAGAT 001360 001361 GGGCATGTGT ACAACTTCCT AAACACACTG CATGTGGTCA TTTTCCAAGC ATAAGGAGGG TACTGTGCAT GCAGGCAGCC 001440 001441 CACCCTAAGG TAGAATCATG GGAAAGGGGC CAGCCTATAA AGTCCTAGGA TCCAGGTTAA AGACCACACT TGTTCTTCAA 001520 001521 GTCACATGCT TGGGTCTCTT CCAAGCACAC TTTCTTTTCT GTTCTAAAGC TTTTTAAAAT AAGCTTCCAC TGCTGCTCTG 001600 |
Predicted Small Protein
Name | NONHSAT034120_smProtein_74:250 |
Length | 59 |
Molecular weight | 6765.764 |
Aromaticity | 0.103448275862 |
Instability index | 75.9293103448 |
Isoelectric point | 11.635925293 |
Runs | 10 |
Runs residual | 0.01582038651 |
Runs probability | 0.0408673379262 |
Amino acid sequence | MSPKSSQNLYYGTNKLNVGLFLTIYLRSLSHIFLQSLLLGRRGTWRGEITSSRHRIQR |
Secondary structure | LLLLLLLLEEELLLLEEEEEEHHHHHHHHHHHHHHHHHHLLLLLEEEEELLLLEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii |