Difference between revisions of "NONHSAT034120"

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sequence = <dnaseq>ACATGGAGATCAAAATACCTTTACTATGGCTAAAGCTGATTGAAAATCTTGGCATAGATATGGAATAAATATTAATGTCTCCAAAATCTTCTCAAAATTTATACTATGGCACAAACAAGTTAAATGTAGGTCTCTTCCTCACCATCTATCTTAGGTCTCTTTCTCATATTTTCCTCCAATCTCTACTGCTGGGAAGGCGAGGGACATGGAGGGGAGAGATCACCTCAAGTAGGCACAGGATTCAAAGATGAGTGAAGCATAGCATCTTTCCTGCATAAACATTTAAAAAAGGAGAAAGTGAGAGAGAGGAGTCTTCCATCCACTTCTAAATAGAACAAAATGATATCTCAGTGCCCTTAACTTTGAAACTGAAACAGAGCTTCTAGATCATCTCAAGATTTTGCAGCTTTGGAGAAAGCAAGCTGTAGGACTCATGGCATAGTGAGCAGCATTTTTGCCATGAGCGTCTGCATTAGGAAAATCTGGAGACTGCCGTCTCAAAGGGCTCCTTGGGCCATGGATCACTGCTCAGGGGATGGGAGGAGGCAAGTCTAGGAGGGCCTGCCTGTGAGCTCAGGTGAGATGCCCTTGAGGCCACTAGGGAGAAGGTGGGCCAGAGTCATTGATGGGATTTGAATAGTGAAGGGGTTAATAAGCCAATGAAATGTGGATTGCTCAACTTAATATAAGCACATAAGTACTGTGTGAGGAAAAACAAACTGTGGAGAAAATAGATTTTCCTCTGCTCTCATCCCACAACAATGAACACAGAAGACTTCTGTGACCAAATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCACTTCAATCCTGACACCATCTACCTGGAGATAGCATCAGATACCGCAGGTTGGGGGCTCAGTCCCACAAGACTGCCCTCGACTTTGGATGCCAATCACAAGCCCCAGGTTTTTATATCTGTGCTTCTGACTGGCTGTAAATAGAAGTTCCCAAAATTCCCTTCTCCTGTTCGATTAGTTTGCTAGAGTGGCTCACAGAACTTGTTACAGGTAGTTAGACAGGCATGAGTGGGGCAGGAGAGGGTCCTCCCTCACCTACTAGGAATGTTGGGTGATGGTTTGGCAATTATCACATTGCCTCTCTAAAAGTGATAAGTTGCCAGCCGGTGCCAGGGAAAGGCCACTTCCTGATGATCTACACCTGTTGCACTAAAGTGTTAATTGAATGCAGATGCCAGTGGGGAGCAAATTTCTGGGCATGCACATTAAGAGACAAAATGGCTGAGTATGATCTTCCAGGCACACTCCACCAGAAAAGGGAAGAAAAGCCTCAGATGGGCATGTGTACAACTTCCTAAACACACTGCATGTGGTCATTTTCCAAGCATAAGGAGGGTACTGTGCATGCAGGCAGCCCACCCTAAGGTAGAATCATGGGAAAGGGGCCAGCCTATAAAGTCCTAGGATCCAGGTTAAAGACCACACTTGTTCTTCAAGTCACATGCTTGGGTCTCTTCCAAGCACACTTTCTTTTCTGTTCTAAAGCTTTTTAAAATAAGCTTCCACTGCTGCTCTG</dnaseq>|
 
sequence = <dnaseq>ACATGGAGATCAAAATACCTTTACTATGGCTAAAGCTGATTGAAAATCTTGGCATAGATATGGAATAAATATTAATGTCTCCAAAATCTTCTCAAAATTTATACTATGGCACAAACAAGTTAAATGTAGGTCTCTTCCTCACCATCTATCTTAGGTCTCTTTCTCATATTTTCCTCCAATCTCTACTGCTGGGAAGGCGAGGGACATGGAGGGGAGAGATCACCTCAAGTAGGCACAGGATTCAAAGATGAGTGAAGCATAGCATCTTTCCTGCATAAACATTTAAAAAAGGAGAAAGTGAGAGAGAGGAGTCTTCCATCCACTTCTAAATAGAACAAAATGATATCTCAGTGCCCTTAACTTTGAAACTGAAACAGAGCTTCTAGATCATCTCAAGATTTTGCAGCTTTGGAGAAAGCAAGCTGTAGGACTCATGGCATAGTGAGCAGCATTTTTGCCATGAGCGTCTGCATTAGGAAAATCTGGAGACTGCCGTCTCAAAGGGCTCCTTGGGCCATGGATCACTGCTCAGGGGATGGGAGGAGGCAAGTCTAGGAGGGCCTGCCTGTGAGCTCAGGTGAGATGCCCTTGAGGCCACTAGGGAGAAGGTGGGCCAGAGTCATTGATGGGATTTGAATAGTGAAGGGGTTAATAAGCCAATGAAATGTGGATTGCTCAACTTAATATAAGCACATAAGTACTGTGTGAGGAAAAACAAACTGTGGAGAAAATAGATTTTCCTCTGCTCTCATCCCACAACAATGAACACAGAAGACTTCTGTGACCAAATGTGGGTCCTCCGCTGCACCCCACACACCAAGCAAGTGATCAATTCTGCAGTGGACACCAGCATTCGGTATCCTCCACTTCAATCCTGACACCATCTACCTGGAGATAGCATCAGATACCGCAGGTTGGGGGCTCAGTCCCACAAGACTGCCCTCGACTTTGGATGCCAATCACAAGCCCCAGGTTTTTATATCTGTGCTTCTGACTGGCTGTAAATAGAAGTTCCCAAAATTCCCTTCTCCTGTTCGATTAGTTTGCTAGAGTGGCTCACAGAACTTGTTACAGGTAGTTAGACAGGCATGAGTGGGGCAGGAGAGGGTCCTCCCTCACCTACTAGGAATGTTGGGTGATGGTTTGGCAATTATCACATTGCCTCTCTAAAAGTGATAAGTTGCCAGCCGGTGCCAGGGAAAGGCCACTTCCTGATGATCTACACCTGTTGCACTAAAGTGTTAATTGAATGCAGATGCCAGTGGGGAGCAAATTTCTGGGCATGCACATTAAGAGACAAAATGGCTGAGTATGATCTTCCAGGCACACTCCACCAGAAAAGGGAAGAAAAGCCTCAGATGGGCATGTGTACAACTTCCTAAACACACTGCATGTGGTCATTTTCCAAGCATAAGGAGGGTACTGTGCATGCAGGCAGCCCACCCTAAGGTAGAATCATGGGAAAGGGGCCAGCCTATAAAGTCCTAGGATCCAGGTTAAAGACCACACTTGTTCTTCAAGTCACATGCTTGGGTCTCTTCCAAGCACACTTTCTTTTCTGTTCTAAAGCTTTTTAAAATAAGCTTCCACTGCTGCTCTG</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG013655]]

Revision as of 10:22, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT034120

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1600 nt

Genomic location

chr13+:61491135..61515902

Exon number

2

Exons

61491135..61491372,61514541..61515902

Genome context

Sequence
000001 ACATGGAGAT CAAAATACCT TTACTATGGC TAAAGCTGAT TGAAAATCTT GGCATAGATA TGGAATAAAT ATTAATGTCT 000080
000081 CCAAAATCTT CTCAAAATTT ATACTATGGC ACAAACAAGT TAAATGTAGG TCTCTTCCTC ACCATCTATC TTAGGTCTCT 000160
000161 TTCTCATATT TTCCTCCAAT CTCTACTGCT GGGAAGGCGA GGGACATGGA GGGGAGAGAT CACCTCAAGT AGGCACAGGA 000240
000241 TTCAAAGATG AGTGAAGCAT AGCATCTTTC CTGCATAAAC ATTTAAAAAA GGAGAAAGTG AGAGAGAGGA GTCTTCCATC 000320
000321 CACTTCTAAA TAGAACAAAA TGATATCTCA GTGCCCTTAA CTTTGAAACT GAAACAGAGC TTCTAGATCA TCTCAAGATT 000400
000401 TTGCAGCTTT GGAGAAAGCA AGCTGTAGGA CTCATGGCAT AGTGAGCAGC ATTTTTGCCA TGAGCGTCTG CATTAGGAAA 000480
000481 ATCTGGAGAC TGCCGTCTCA AAGGGCTCCT TGGGCCATGG ATCACTGCTC AGGGGATGGG AGGAGGCAAG TCTAGGAGGG 000560
000561 CCTGCCTGTG AGCTCAGGTG AGATGCCCTT GAGGCCACTA GGGAGAAGGT GGGCCAGAGT CATTGATGGG ATTTGAATAG 000640
000641 TGAAGGGGTT AATAAGCCAA TGAAATGTGG ATTGCTCAAC TTAATATAAG CACATAAGTA CTGTGTGAGG AAAAACAAAC 000720
000721 TGTGGAGAAA ATAGATTTTC CTCTGCTCTC ATCCCACAAC AATGAACACA GAAGACTTCT GTGACCAAAT GTGGGTCCTC 000800
000801 CGCTGCACCC CACACACCAA GCAAGTGATC AATTCTGCAG TGGACACCAG CATTCGGTAT CCTCCACTTC AATCCTGACA 000880
000881 CCATCTACCT GGAGATAGCA TCAGATACCG CAGGTTGGGG GCTCAGTCCC ACAAGACTGC CCTCGACTTT GGATGCCAAT 000960
000961 CACAAGCCCC AGGTTTTTAT ATCTGTGCTT CTGACTGGCT GTAAATAGAA GTTCCCAAAA TTCCCTTCTC CTGTTCGATT 001040
001041 AGTTTGCTAG AGTGGCTCAC AGAACTTGTT ACAGGTAGTT AGACAGGCAT GAGTGGGGCA GGAGAGGGTC CTCCCTCACC 001120
001121 TACTAGGAAT GTTGGGTGAT GGTTTGGCAA TTATCACATT GCCTCTCTAA AAGTGATAAG TTGCCAGCCG GTGCCAGGGA 001200
001201 AAGGCCACTT CCTGATGATC TACACCTGTT GCACTAAAGT GTTAATTGAA TGCAGATGCC AGTGGGGAGC AAATTTCTGG 001280
001281 GCATGCACAT TAAGAGACAA AATGGCTGAG TATGATCTTC CAGGCACACT CCACCAGAAA AGGGAAGAAA AGCCTCAGAT 001360
001361 GGGCATGTGT ACAACTTCCT AAACACACTG CATGTGGTCA TTTTCCAAGC ATAAGGAGGG TACTGTGCAT GCAGGCAGCC 001440
001441 CACCCTAAGG TAGAATCATG GGAAAGGGGC CAGCCTATAA AGTCCTAGGA TCCAGGTTAA AGACCACACT TGTTCTTCAA 001520
001521 GTCACATGCT TGGGTCTCTT CCAAGCACAC TTTCTTTTCT GTTCTAAAGC TTTTTAAAAT AAGCTTCCAC TGCTGCTCTG 001600
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Predicted Small Protein

Name NONHSAT034120_smProtein_74:250
Length 59
Molecular weight 6765.764
Aromaticity 0.103448275862
Instability index 75.9293103448
Isoelectric point 11.635925293
Runs 10
Runs residual 0.01582038651
Runs probability 0.0408673379262
Amino acid sequence MSPKSSQNLYYGTNKLNVGLFLTIYLRSLSHIFLQSLLLGRRGTWRGEITSSRHRIQR
Secondary structure LLLLLLLLEEELLLLEEEEEEHHHHHHHHHHHHHHHHHHLLLLLEEEEELLLLEEEEL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii