Difference between revisions of "NONHSAT035074"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>ggtgaggaaacagacgcacacagaggtgaagcagcttccccaaaggcgcatggctaagagtggTTATttgtctccttgtcacgctgttttgagggaaggattcctacactaggattatgaagatcgccaaacagatgacgctggatcccagaaaagtggggcagaatgcagtttagttgtcacatatgctcacagcctagggaagaagacagcggacagcccacagggccacgcgatggttcaagaacagagtgaacagccagggcctgtgaaagGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCATAAACATAGCCGAAGCCTGGGCCATCCACAGAAGACCCAATGTTCTCTTTTTCCAAGTGGGCATTTTGTATCTCTGAAGAGTTCTAGACTGAGCTACATCAGTAGACCTCTGCATTTAAAGGGAGCAATTCTCATCCGAGGATCCTGATTCTTCTACTGTAGTGCAATTTCACCACTCTCTCCAAATGTCTCCAAGCAAATTCAAAGCAGCTGAAAATAACTGCATGCCTGAGAGGACCACGAAGCTTCAGGCCAGCCCTGTCCCGAAGTCTTCTGTGCTTCATGTCGAGTGGTCTGCAGTGGACTGTGTCTGCTTGAAGCGATGCTCCGGAGGGCTTATTGTTGTGTGGGGTAAAGCATGAGATCACTGAAAAATGAGAGAAATCGAGCATACGAAATGTGAAGCATATCTGTTGACACCATGCGCTCCCTTTGCTTGCACTGGATGGCGCATGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCTTTCCAGAAGGTTGCTGTTCATTACAGCTCGAGTGTGCTGGGTTCTGCAGatattatctattttaaattaacgctccgtaaaaggaatttaaagttttctgaaaagaaaccaatgaatgaagctaatagtaataatgcaaacacaagcaagctgccaagtaagccatttttctattacggagcccttcatcagtcatattattaaagaaaaaacaaCAATACTAGTAATAATGATCACCTATTCAAGACCAAGAGGTTGATCCTCCAAAATTCAAACAAGGAAAAATCTCTCCCAATCTCTCCTTTCCTCCATCCCTTTTCTTTACTTCTCATCCCATATATAATATTATATAATGCATACGTAATAAAAGacattcactattatta</dnaseq>|
 
sequence = <dnaseq>ggtgaggaaacagacgcacacagaggtgaagcagcttccccaaaggcgcatggctaagagtggTTATttgtctccttgtcacgctgttttgagggaaggattcctacactaggattatgaagatcgccaaacagatgacgctggatcccagaaaagtggggcagaatgcagtttagttgtcacatatgctcacagcctagggaagaagacagcggacagcccacagggccacgcgatggttcaagaacagagtgaacagccagggcctgtgaaagGGAGGAATCTCCCAGTGTTTGTGCCATGTTTTGATCTGACTGAAAGCCATAAACATAGCCGAAGCCTGGGCCATCCACAGAAGACCCAATGTTCTCTTTTTCCAAGTGGGCATTTTGTATCTCTGAAGAGTTCTAGACTGAGCTACATCAGTAGACCTCTGCATTTAAAGGGAGCAATTCTCATCCGAGGATCCTGATTCTTCTACTGTAGTGCAATTTCACCACTCTCTCCAAATGTCTCCAAGCAAATTCAAAGCAGCTGAAAATAACTGCATGCCTGAGAGGACCACGAAGCTTCAGGCCAGCCCTGTCCCGAAGTCTTCTGTGCTTCATGTCGAGTGGTCTGCAGTGGACTGTGTCTGCTTGAAGCGATGCTCCGGAGGGCTTATTGTTGTGTGGGGTAAAGCATGAGATCACTGAAAAATGAGAGAAATCGAGCATACGAAATGTGAAGCATATCTGTTGACACCATGCGCTCCCTTTGCTTGCACTGGATGGCGCATGGTTTCCGTGCGCAGTGCCTGAGGTGTGGGGCAGGCGAGGCCCATGCAGCCTGGCTCCTTTCCAGAAGGTTGCTGTTCATTACAGCTCGAGTGTGCTGGGTTCTGCAGatattatctattttaaattaacgctccgtaaaaggaatttaaagttttctgaaaagaaaccaatgaatgaagctaatagtaataatgcaaacacaagcaagctgccaagtaagccatttttctattacggagcccttcatcagtcatattattaaagaaaaaacaaCAATACTAGTAATAATGATCACCTATTCAAGACCAAGAGGTTGATCCTCCAAAATTCAAACAAGGAAAAATCTCTCCCAATCTCTCCTTTCCTCCATCCCTTTTCTTTACTTCTCATCCCATATATAATATTATATAATGCATACGTAATAAAAGacattcactattatta</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG014135]]

Revision as of 10:42, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT035074

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1223 nt

Genomic location

chr13+:107306228..107324528

Exon number

3

Exons

107306228..107306502,107320994..107321276,107323864..107324528

Genome context

Sequence
000001 ggtgaggaaa cagacgcaca cagaggtgaa gcagcttccc caaaggcgca tggctaagag tggTTATttg tctccttgtc 000080
000081 acgctgtttt gagggaagga ttcctacact aggattatga agatcgccaa acagatgacg ctggatccca gaaaagtggg 000160
000161 gcagaatgca gtttagttgt cacatatgct cacagcctag ggaagaagac agcggacagc ccacagggcc acgcgatggt 000240
000241 tcaagaacag agtgaacagc cagggcctgt gaaagGGAGG AATCTCCCAG TGTTTGTGCC ATGTTTTGAT CTGACTGAAA 000320
000321 GCCATAAACA TAGCCGAAGC CTGGGCCATC CACAGAAGAC CCAATGTTCT CTTTTTCCAA GTGGGCATTT TGTATCTCTG 000400
000401 AAGAGTTCTA GACTGAGCTA CATCAGTAGA CCTCTGCATT TAAAGGGAGC AATTCTCATC CGAGGATCCT GATTCTTCTA 000480
000481 CTGTAGTGCA ATTTCACCAC TCTCTCCAAA TGTCTCCAAG CAAATTCAAA GCAGCTGAAA ATAACTGCAT GCCTGAGAGG 000560
000561 ACCACGAAGC TTCAGGCCAG CCCTGTCCCG AAGTCTTCTG TGCTTCATGT CGAGTGGTCT GCAGTGGACT GTGTCTGCTT 000640
000641 GAAGCGATGC TCCGGAGGGC TTATTGTTGT GTGGGGTAAA GCATGAGATC ACTGAAAAAT GAGAGAAATC GAGCATACGA 000720
000721 AATGTGAAGC ATATCTGTTG ACACCATGCG CTCCCTTTGC TTGCACTGGA TGGCGCATGG TTTCCGTGCG CAGTGCCTGA 000800
000801 GGTGTGGGGC AGGCGAGGCC CATGCAGCCT GGCTCCTTTC CAGAAGGTTG CTGTTCATTA CAGCTCGAGT GTGCTGGGTT 000880
000881 CTGCAGatat tatctatttt aaattaacgc tccgtaaaag gaatttaaag ttttctgaaa agaaaccaat gaatgaagct 000960
000961 aatagtaata atgcaaacac aagcaagctg ccaagtaagc catttttcta ttacggagcc cttcatcagt catattatta 001040
001041 aagaaaaaac aaCAATACTA GTAATAATGA TCACCTATTC AAGACCAAGA GGTTGATCCT CCAAAATTCA AACAAGGAAA 001120
001121 AATCTCTCCC AATCTCTCCT TTCCTCCATC CCTTTTCTTT ACTTCTCATC CCATATATAA TATTATATAA TGCATACGTA 001200
001201 ATAAAAGaca ttcactatta tta
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Predicted Small Protein

Name NONHSAT035074_smProtein_509:685
Length 59
Molecular weight 6276.3389
Aromaticity 0.051724137931
Instability index 61.5068965517
Isoelectric point 9.12872314453
Runs 7
Runs residual 0.035903751421
Runs probability 0.0385974209503
Amino acid sequence MSPSKFKAAENNCMPERTTKLQASPVPKSSVLHVEWSAVDCVCLKRCSGGLIVVWGKA
Secondary structure LLHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEEEEELLLLEEEEEEEL
PRMN -
PiMo -