Difference between revisions of "NONHSAT036152"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>ATTCTGAAATATTTCTCTTCCTCTCCACACAATTCCATCCTGTCTCCCATGCCAGAGGGCTAGTGGGATACTTATTTATACCGCTGCAGCAGTGCCGTACTTTAAGATTGCCAAAGAACCAGGCAACGTGAGTATCCAGGTGCACAGAATCGTCAGGAATTGTGataccccacacccaatcttacattagcctcttgcatttgtcatgattagctcatcaatattgacatactgttattaattaaagtgcatactttgttcagattttcttattttttacctaatattctccttctattccaggattctatcaggatgcaacactgtatttagtcatcatgactccttcatcacctcctgctttgacactttcagaatttcttcattttagatgaccttggcagtttttaggagtgctggtcaggtattttgtaaaatgtttctcatttgggatttgtctgattttttctcgtgattagactgaagttaagagtaagaagaagacaacagaggtaaagtgccattcttatcacatcatattaaggatgcatatgacatcagggttgtgttttgatctgaaccccttggaagaggcagtgtttatcaggtttttccactataaagttagtattttttctgcctttccatactgcattctttggaaggaagccatttaatccaatccataagaaaggaatgtaagcttatgttccacctccttgagagcagaatatcttcataaattatctggaatttcctatgcaagagtatatttgtgtattcttctccatgaacctatttatccagtcatttgtttatatcaggatgagcttataagtatttatttgatactctgggatatgattaaatatgttcatgattcttcgacatgtactggattttgccattttaagagctttcggaaggttcaaatgtccctttgacataccccataccctcattattgggtgagtgatcgtgtatgtatatgggtctttggatacttctttaaattttgacaccacaagatgctccaggattatattatatatttcctgcccaacaaccagtcatttcttcaggaagccatggttcttttcattggacgacggttttagaaacaaggtctagatcccaaatatgcctgttgctgctggaatatctttgtttcttggccctctcagagtaaaagaatatatgtgtgtatactaaccagtatacacacatatatttataaatatttctatatgtatctatttttatctatattgagctaaacataatttatactgatatctccaactctaattcattaactaccttataggtaagtaatgcatccatgtttctccccttgtttgtttgtcacctcccacttcaaaagtgagaaaactggctctcaccttcagccatctattacttaatttttcagttccaggattcatgtatagttggttcaaaatagttaatccatattcccgtggaaaacaactttatgaactagaatatagtcttcatcagctcatagagtgcttatagggcttttgccatcagtcttagtttccattcctttccaaagttgcttagagtggcacctttttcccgcagtgccttttcattaggtttttcagaaatttgtaataGCCCTCAAATTTCCTAGAGGACCAACACAAGAAATGTTTATTCGAGCAATTATATATCTTGCTTATTTATAAACATGAAATAAACACCTTCCTAATTCAATAACAGATTAAAAAATTCAATACCCAGAAGAATATGTGTGCTTAATTTTATCTTTAAAGGTATAttctcagaataaagtaactacatacctaagtacttttcttgttttaccttactttctgaaccaaagctaaatttgaatctcaagcacagtaattcattctgcagtgtccaatagtagctatcccagcttcttttcattggttttgatttctcttcgatttAGTAAATCATGTTGTTTATATCCTATTTATTTTTAAGATGCCTCGGTAATTTTCATGAATTAGCAGCATTAAAAACATAAATAAATAATCTGAATTATTGAGTCTCCAAAGTTCTGAACATACTGAACTCTTCATGTGTATATGTATGTAAAATATGTACTACATGAAAACACT</dnaseq>|
 
sequence = <dnaseq>ATTCTGAAATATTTCTCTTCCTCTCCACACAATTCCATCCTGTCTCCCATGCCAGAGGGCTAGTGGGATACTTATTTATACCGCTGCAGCAGTGCCGTACTTTAAGATTGCCAAAGAACCAGGCAACGTGAGTATCCAGGTGCACAGAATCGTCAGGAATTGTGataccccacacccaatcttacattagcctcttgcatttgtcatgattagctcatcaatattgacatactgttattaattaaagtgcatactttgttcagattttcttattttttacctaatattctccttctattccaggattctatcaggatgcaacactgtatttagtcatcatgactccttcatcacctcctgctttgacactttcagaatttcttcattttagatgaccttggcagtttttaggagtgctggtcaggtattttgtaaaatgtttctcatttgggatttgtctgattttttctcgtgattagactgaagttaagagtaagaagaagacaacagaggtaaagtgccattcttatcacatcatattaaggatgcatatgacatcagggttgtgttttgatctgaaccccttggaagaggcagtgtttatcaggtttttccactataaagttagtattttttctgcctttccatactgcattctttggaaggaagccatttaatccaatccataagaaaggaatgtaagcttatgttccacctccttgagagcagaatatcttcataaattatctggaatttcctatgcaagagtatatttgtgtattcttctccatgaacctatttatccagtcatttgtttatatcaggatgagcttataagtatttatttgatactctgggatatgattaaatatgttcatgattcttcgacatgtactggattttgccattttaagagctttcggaaggttcaaatgtccctttgacataccccataccctcattattgggtgagtgatcgtgtatgtatatgggtctttggatacttctttaaattttgacaccacaagatgctccaggattatattatatatttcctgcccaacaaccagtcatttcttcaggaagccatggttcttttcattggacgacggttttagaaacaaggtctagatcccaaatatgcctgttgctgctggaatatctttgtttcttggccctctcagagtaaaagaatatatgtgtgtatactaaccagtatacacacatatatttataaatatttctatatgtatctatttttatctatattgagctaaacataatttatactgatatctccaactctaattcattaactaccttataggtaagtaatgcatccatgtttctccccttgtttgtttgtcacctcccacttcaaaagtgagaaaactggctctcaccttcagccatctattacttaatttttcagttccaggattcatgtatagttggttcaaaatagttaatccatattcccgtggaaaacaactttatgaactagaatatagtcttcatcagctcatagagtgcttatagggcttttgccatcagtcttagtttccattcctttccaaagttgcttagagtggcacctttttcccgcagtgccttttcattaggtttttcagaaatttgtaataGCCCTCAAATTTCCTAGAGGACCAACACAAGAAATGTTTATTCGAGCAATTATATATCTTGCTTATTTATAAACATGAAATAAACACCTTCCTAATTCAATAACAGATTAAAAAATTCAATACCCAGAAGAATATGTGTGCTTAATTTTATCTTTAAAGGTATAttctcagaataaagtaactacatacctaagtacttttcttgttttaccttactttctgaaccaaagctaaatttgaatctcaagcacagtaattcattctgcagtgtccaatagtagctatcccagcttcttttcattggttttgatttctcttcgatttAGTAAATCATGTTGTTTATATCCTATTTATTTTTAAGATGCCTCGGTAATTTTCATGAATTAGCAGCATTAAAAACATAAATAAATAATCTGAATTATTGAGTCTCCAAAGTTCTGAACATACTGAACTCTTCATGTGTATATGTATGTAAAATATGTACTACATGAAAACACT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG014586]]

Revision as of 11:13, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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You can also add sub-section(s) at will.

Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT036152

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2141 nt

Genomic location

chr14+:29047214..29070760

Exon number

2

Exons

29047214..29047377,29068784..29070760

Genome context

Sequence
000001 ATTCTGAAAT ATTTCTCTTC CTCTCCACAC AATTCCATCC TGTCTCCCAT GCCAGAGGGC TAGTGGGATA CTTATTTATA 000080
000081 CCGCTGCAGC AGTGCCGTAC TTTAAGATTG CCAAAGAACC AGGCAACGTG AGTATCCAGG TGCACAGAAT CGTCAGGAAT 000160
000161 TGTGataccc cacacccaat cttacattag cctcttgcat ttgtcatgat tagctcatca atattgacat actgttatta 000240
000241 attaaagtgc atactttgtt cagattttct tattttttac ctaatattct ccttctattc caggattcta tcaggatgca 000320
000321 acactgtatt tagtcatcat gactccttca tcacctcctg ctttgacact ttcagaattt cttcatttta gatgaccttg 000400
000401 gcagttttta ggagtgctgg tcaggtattt tgtaaaatgt ttctcatttg ggatttgtct gattttttct cgtgattaga 000480
000481 ctgaagttaa gagtaagaag aagacaacag aggtaaagtg ccattcttat cacatcatat taaggatgca tatgacatca 000560
000561 gggttgtgtt ttgatctgaa ccccttggaa gaggcagtgt ttatcaggtt tttccactat aaagttagta ttttttctgc 000640
000641 ctttccatac tgcattcttt ggaaggaagc catttaatcc aatccataag aaaggaatgt aagcttatgt tccacctcct 000720
000721 tgagagcaga atatcttcat aaattatctg gaatttccta tgcaagagta tatttgtgta ttcttctcca tgaacctatt 000800
000801 tatccagtca tttgtttata tcaggatgag cttataagta tttatttgat actctgggat atgattaaat atgttcatga 000880
000881 ttcttcgaca tgtactggat tttgccattt taagagcttt cggaaggttc aaatgtccct ttgacatacc ccataccctc 000960
000961 attattgggt gagtgatcgt gtatgtatat gggtctttgg atacttcttt aaattttgac accacaagat gctccaggat 001040
001041 tatattatat atttcctgcc caacaaccag tcatttcttc aggaagccat ggttcttttc attggacgac ggttttagaa 001120
001121 acaaggtcta gatcccaaat atgcctgttg ctgctggaat atctttgttt cttggccctc tcagagtaaa agaatatatg 001200
001201 tgtgtatact aaccagtata cacacatata tttataaata tttctatatg tatctatttt tatctatatt gagctaaaca 001280
001281 taatttatac tgatatctcc aactctaatt cattaactac cttataggta agtaatgcat ccatgtttct ccccttgttt 001360
001361 gtttgtcacc tcccacttca aaagtgagaa aactggctct caccttcagc catctattac ttaatttttc agttccagga 001440
001441 ttcatgtata gttggttcaa aatagttaat ccatattccc gtggaaaaca actttatgaa ctagaatata gtcttcatca 001520
001521 gctcatagag tgcttatagg gcttttgcca tcagtcttag tttccattcc tttccaaagt tgcttagagt ggcacctttt 001600
001601 tcccgcagtg ccttttcatt aggtttttca gaaatttgta ataGCCCTCA AATTTCCTAG AGGACCAACA CAAGAAATGT 001680
001681 TTATTCGAGC AATTATATAT CTTGCTTATT TATAAACATG AAATAAACAC CTTCCTAATT CAATAACAGA TTAAAAAATT 001760
001761 CAATACCCAG AAGAATATGT GTGCTTAATT TTATCTTTAA AGGTATAttc tcagaataaa gtaactacat acctaagtac 001840
001841 ttttcttgtt ttaccttact ttctgaacca aagctaaatt tgaatctcaa gcacagtaat tcattctgca gtgtccaata 001920
001921 gtagctatcc cagcttcttt tcattggttt tgatttctct tcgatttAGT AAATCATGTT GTTTATATCC TATTTATTTT 002000
002001 TAAGATGCCT CGGTAATTTT CATGAATTAG CAGCATTAAA AACATAAATA AATAATCTGA ATTATTGAGT CTCCAAAGTT 002080
002081 CTGAACATAC TGAACTCTTC ATGTGTATAT GTATGTAAAA TATGTACTAC ATGAAAACAC T
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Predicted Small Protein

Name NONHSAT036152_smProtein_545:676
Length 44
Molecular weight 5116.0071
Aromaticity 0.209302325581
Instability index 54.9093023256
Isoelectric point 5.98760986328
Runs 6
Runs residual 0.0177684870656
Runs probability 0.054039333451
Amino acid sequence MHMTSGLCFDLNPLEEAVFIRFFHYKVSIFSAFPYCILWKEAI
Secondary structure LLLLLLLLLLLLHHHHHHHHHHHHEEEEEELLLHHHHHHHHHL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLL
PiMo ooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiii