Difference between revisions of "NONHSAT052769"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
Line 42: Line 42:
 
sequence = <dnaseq>GTGCTTATAGTTTAAAACATGTATTACAATGCCCATTTGAAATGTGTGTACCAGCTAGAAAACttttttttttttttttttggagactcgctatgtcgcccaggctggagtgcggtggcgctatcgatctcggctcactgcagcctccgcctcctgcgttcaagcgattctcctgtctcagcctccttagtagctgggactacagatgcatgccaccacgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggatgttcttgatctcctgacctcgtgatccgcccgcctctgcctcccaaagtgctgggattacaggtgtgacccaccgcgcctggccGCTAGAAAACATTTTAAAATTATGTAGAAGAGGCTACTGATATCTTTATTACTAGTCATTAGCCTGTGGTTTTTTGAAGCAGCATGCTATAATATTACAGCGGCTCAttactgacaacctactctgtgccagctgctgtaagcatatgattaccaatacataagcaaaccctgaaggtaggggtttaaaaaacaagaagctgaagttcataggttaagtagattgttgataaatcatagagtcagtaagtggctgtgccgagattcgaactggcatttggtctctgggcaaatatgctccactatgttaACTACGCTTTCTATTTCTGGTTGAAAAGCATATTGAAATAATGTTTTGTATTCTTTTTGAAAGAGAGATTCTTATACCATTACCTCTGGTACTTCTGCCCTTTTATTTTAACCTTCACTTCACCATGAATGAGAATACTCGTATCTGTGTGTGGGTGTCCAGACTGTGGCTTCTGTCACGCAACCCTTAGATGCCAGACTGCTAAACCAATTTCTCTACTTGCCTGTTTGCTTCTGCTATTAAAACTTATGTACTTATTTCTATCATACTCATATTCGACCTTGTTAGTAGCACATTGTTTATTGTTAGTTTTAGCCCTCCAAATTACTTTCAGTAAGtttttttcttttttttagatggagtctcgcactgtcgcccaggctggagtgcagtggctcaatctccactcactgcaaactctgccttccagtgccttccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccaccacgcctggctaattttttgtatttttaatagagacagggtttcaccgtgttagctaggatggtcttgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcctggccTCAGTAAGTTTTTTAAAGGCGGTTTTTggccaggtgcgatgtctcatgcctgtaattctagcacttttggaggcccaggcaggagggtcactggagtttaggagttcgagagcagcctgggcaacattgtgagaaaaaacagaaaagaaaaaaagaaagaaaaaGGCAATTTTTGTGGTAACTTTTTTTCTTTATGTTCAATTGAGAAGTCATTTTGGTccgggcgtggtggctcacacctgtaatcctagcactttgggaggccaaggtgggtggatcacttgaggtcaggagttaaagaccaccctggccaacatggtgaaaccccgtctttactaaaaatacaaaaattagccaggcatggtggcgtgcgccaccacacctggctaattttctatttttagtagagatagggtttctccatgttgatcaggctggtctcaaactcccgacctcaggtgatccgcccaccttggcctcccaaagtggtgggattacaggcgtgcaccaccgtgcccagccAACACTTTTCTTTATGGGGGTAACAAGATCAGTATATGATCATTTTCATAGTTTGTTTTCTTTAGAATGGTGCTGTGATTTTTGTGTCTACTTTTTATGTCTAATTATTTGTTGTTATAATTTTGTTAAAGATCTCAGGAAACAGGCTCGACAGCTGGAAAATGAACTTGACCTGAAACTAGTTTCCTTCAGCAAACTATGTACAAGTTACAGTCATAGCAGTACCCGAGATGGAAGACGCGACAGGTATAGGTACTACCAGATTCTGTCTCCTATGCCTTAACTGTGTTTTTAAAGCATTAAAAAATAAACTAAAATATATAACTTCTGT</dnaseq>|
 
sequence = <dnaseq>GTGCTTATAGTTTAAAACATGTATTACAATGCCCATTTGAAATGTGTGTACCAGCTAGAAAACttttttttttttttttttggagactcgctatgtcgcccaggctggagtgcggtggcgctatcgatctcggctcactgcagcctccgcctcctgcgttcaagcgattctcctgtctcagcctccttagtagctgggactacagatgcatgccaccacgcctggctaatttttgtatttttagtagagacggggtttcaccatgttggccaggatgttcttgatctcctgacctcgtgatccgcccgcctctgcctcccaaagtgctgggattacaggtgtgacccaccgcgcctggccGCTAGAAAACATTTTAAAATTATGTAGAAGAGGCTACTGATATCTTTATTACTAGTCATTAGCCTGTGGTTTTTTGAAGCAGCATGCTATAATATTACAGCGGCTCAttactgacaacctactctgtgccagctgctgtaagcatatgattaccaatacataagcaaaccctgaaggtaggggtttaaaaaacaagaagctgaagttcataggttaagtagattgttgataaatcatagagtcagtaagtggctgtgccgagattcgaactggcatttggtctctgggcaaatatgctccactatgttaACTACGCTTTCTATTTCTGGTTGAAAAGCATATTGAAATAATGTTTTGTATTCTTTTTGAAAGAGAGATTCTTATACCATTACCTCTGGTACTTCTGCCCTTTTATTTTAACCTTCACTTCACCATGAATGAGAATACTCGTATCTGTGTGTGGGTGTCCAGACTGTGGCTTCTGTCACGCAACCCTTAGATGCCAGACTGCTAAACCAATTTCTCTACTTGCCTGTTTGCTTCTGCTATTAAAACTTATGTACTTATTTCTATCATACTCATATTCGACCTTGTTAGTAGCACATTGTTTATTGTTAGTTTTAGCCCTCCAAATTACTTTCAGTAAGtttttttcttttttttagatggagtctcgcactgtcgcccaggctggagtgcagtggctcaatctccactcactgcaaactctgccttccagtgccttccaggttcacgccattctcctgcctcagcctcctgagtagctgggactacaggcgcccaccaccacgcctggctaattttttgtatttttaatagagacagggtttcaccgtgttagctaggatggtcttgatctcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcgcctggccTCAGTAAGTTTTTTAAAGGCGGTTTTTggccaggtgcgatgtctcatgcctgtaattctagcacttttggaggcccaggcaggagggtcactggagtttaggagttcgagagcagcctgggcaacattgtgagaaaaaacagaaaagaaaaaaagaaagaaaaaGGCAATTTTTGTGGTAACTTTTTTTCTTTATGTTCAATTGAGAAGTCATTTTGGTccgggcgtggtggctcacacctgtaatcctagcactttgggaggccaaggtgggtggatcacttgaggtcaggagttaaagaccaccctggccaacatggtgaaaccccgtctttactaaaaatacaaaaattagccaggcatggtggcgtgcgccaccacacctggctaattttctatttttagtagagatagggtttctccatgttgatcaggctggtctcaaactcccgacctcaggtgatccgcccaccttggcctcccaaagtggtgggattacaggcgtgcaccaccgtgcccagccAACACTTTTCTTTATGGGGGTAACAAGATCAGTATATGATCATTTTCATAGTTTGTTTTCTTTAGAATGGTGCTGTGATTTTTGTGTCTACTTTTTATGTCTAATTATTTGTTGTTATAATTTTGTTAAAGATCTCAGGAAACAGGCTCGACAGCTGGAAAATGAACTTGACCTGAAACTAGTTTCCTTCAGCAAACTATGTACAAGTTACAGTCATAGCAGTACCCGAGATGGAAGACGCGACAGGTATAGGTACTACCAGATTCTGTCTCCTATGCCTTAACTGTGTTTTTAAAGCATTAAAAAATAAACTAAAATATATAACTTCTGT</dnaseq>|
 
}}
 
}}
[[Category:Sense]]
+
[[Category:Sense]][[Category:NONHSAG021397]]

Revision as of 06:35, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT052769

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2166 nt

Genomic location

chr17+:28805513..28808360

Exon number

2

Exons

28805513..28807191,28807874..28808360

Genome context

Sequence
000001 GTGCTTATAG TTTAAAACAT GTATTACAAT GCCCATTTGA AATGTGTGTA CCAGCTAGAA AACttttttt tttttttttt 000080
000081 tggagactcg ctatgtcgcc caggctggag tgcggtggcg ctatcgatct cggctcactg cagcctccgc ctcctgcgtt 000160
000161 caagcgattc tcctgtctca gcctccttag tagctgggac tacagatgca tgccaccacg cctggctaat ttttgtattt 000240
000241 ttagtagaga cggggtttca ccatgttggc caggatgttc ttgatctcct gacctcgtga tccgcccgcc tctgcctccc 000320
000321 aaagtgctgg gattacaggt gtgacccacc gcgcctggcc GCTAGAAAAC ATTTTAAAAT TATGTAGAAG AGGCTACTGA 000400
000401 TATCTTTATT ACTAGTCATT AGCCTGTGGT TTTTTGAAGC AGCATGCTAT AATATTACAG CGGCTCAtta ctgacaacct 000480
000481 actctgtgcc agctgctgta agcatatgat taccaataca taagcaaacc ctgaaggtag gggtttaaaa aacaagaagc 000560
000561 tgaagttcat aggttaagta gattgttgat aaatcataga gtcagtaagt ggctgtgccg agattcgaac tggcatttgg 000640
000641 tctctgggca aatatgctcc actatgttaA CTACGCTTTC TATTTCTGGT TGAAAAGCAT ATTGAAATAA TGTTTTGTAT 000720
000721 TCTTTTTGAA AGAGAGATTC TTATACCATT ACCTCTGGTA CTTCTGCCCT TTTATTTTAA CCTTCACTTC ACCATGAATG 000800
000801 AGAATACTCG TATCTGTGTG TGGGTGTCCA GACTGTGGCT TCTGTCACGC AACCCTTAGA TGCCAGACTG CTAAACCAAT 000880
000881 TTCTCTACTT GCCTGTTTGC TTCTGCTATT AAAACTTATG TACTTATTTC TATCATACTC ATATTCGACC TTGTTAGTAG 000960
000961 CACATTGTTT ATTGTTAGTT TTAGCCCTCC AAATTACTTT CAGTAAGttt ttttcttttt tttagatgga gtctcgcact 001040
001041 gtcgcccagg ctggagtgca gtggctcaat ctccactcac tgcaaactct gccttccagt gccttccagg ttcacgccat 001120
001121 tctcctgcct cagcctcctg agtagctggg actacaggcg cccaccacca cgcctggcta attttttgta tttttaatag 001200
001201 agacagggtt tcaccgtgtt agctaggatg gtcttgatct cctgacctca tgatccgcct gcctcggcct cccaaagtgc 001280
001281 tgggattaca ggcgtgagcc actgcgcctg gccTCAGTAA GTTTTTTAAA GGCGGTTTTT ggccaggtgc gatgtctcat 001360
001361 gcctgtaatt ctagcacttt tggaggccca ggcaggaggg tcactggagt ttaggagttc gagagcagcc tgggcaacat 001440
001441 tgtgagaaaa aacagaaaag aaaaaaagaa agaaaaaGGC AATTTTTGTG GTAACTTTTT TTCTTTATGT TCAATTGAGA 001520
001521 AGTCATTTTG GTccgggcgt ggtggctcac acctgtaatc ctagcacttt gggaggccaa ggtgggtgga tcacttgagg 001600
001601 tcaggagtta aagaccaccc tggccaacat ggtgaaaccc cgtctttact aaaaatacaa aaattagcca ggcatggtgg 001680
001681 cgtgcgccac cacacctggc taattttcta tttttagtag agatagggtt tctccatgtt gatcaggctg gtctcaaact 001760
001761 cccgacctca ggtgatccgc ccaccttggc ctcccaaagt ggtgggatta caggcgtgca ccaccgtgcc cagccAACAC 001840
001841 TTTTCTTTAT GGGGGTAACA AGATCAGTAT ATGATCATTT TCATAGTTTG TTTTCTTTAG AATGGTGCTG TGATTTTTGT 001920
001921 GTCTACTTTT TATGTCTAAT TATTTGTTGT TATAATTTTG TTAAAGATCT CAGGAAACAG GCTCGACAGC TGGAAAATGA 002000
002001 ACTTGACCTG AAACTAGTTT CCTTCAGCAA ACTATGTACA AGTTACAGTC ATAGCAGTAC CCGAGATGGA AGACGCGACA 002080
002081 GGTATAGGTA CTACCAGATT CTGTCTCCTA TGCCTTAACT GTGTTTTTAA AGCATTAAAA AATAAACTAA AATATATAAC 002160
002161 TTCTGT
[back to top]

Predicted Small Protein

Name NONHSAT052769_smProtein_41:283
Length 81
Molecular weight 9084.7125
Aromaticity 0.1625
Instability index 72.85875
Isoelectric point 9.04937744141
Runs 12
Runs residual 0.0111842105263
Runs probability 0.0311561561562
Amino acid sequence MCVPARKLFFFFFWRLAMSPRLECGGAIDLGSLQPPPPAFKRFSCLSLLSSWDYRCMPPR
LANFCIFSRDGVSPCWPGCS
Secondary structure LLLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLEEHHHLLLLLEELLLHH
HLLEEEEELLLLLLLLLLLL
PRMN -
PiMo -