Difference between revisions of "NONHSAT053746"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TACCTGTCGGAACATGGAGGAGGAGCTGGCAACAACTGGGCCAGCGGATTCTCCCAGGTGTCCTAGCGACCATTCCAGAGACCTTTGATATTCCCATCCAGAGGGTGAGAAAATTCATGAAGACATCTTTGACATCATAGACCGAGAAGCAGATGGAAGTGACAGTTTGGAGGTGAAGTTATGGAGTGGGGGAAGGAATGGGCAGGGAGGCCGAAGAGTGCTGGGGACAGGTCAGGAGGTGGCCTGGATAGGTAATATGAGGGGAGCAattcaattcaaaacccgtttatggagcatcagatgtgggatattgaggtgaataagatataatctttgttctcaaggaagtcataaatctgaatggCACCGGCCCCTTAGGCATGAGTCATTCAGCTGCTTCTCCAGCTCCAAACCTTCCCAAGGAGCCTCAGCCTGGATGCATAAGAGGAAGCTTTGAGACATTGGCGTTTTGGGAATGGAGAATGAACCAAGCCGAAGTCTCTCCCCCAGATCCTTGGAGACTGCCTCTCCATCTCTCCCCATGCTGGGTGCGATATgttcctggcttacagctcttataacccatgtaatttcctaagggactagagcaataatagtatgttttgttaaaatatttgaccttttgtccttggtttctgaaacagctccagaacagctccagagtgataaaggtgaaagacagtcttttgttATTTATAACAAGCCCGTTTCTTTTAGTTTAATCTTTCATTTTATTTTAATTAGTTAATTTTACTAACCACTGTACTAAGGAGGAACAAGTGCCTTTCAACCAAACCTGAGCttatgttaaagaggcgatttttggaaagtccca</dnaseq>| | sequence = <dnaseq>TACCTGTCGGAACATGGAGGAGGAGCTGGCAACAACTGGGCCAGCGGATTCTCCCAGGTGTCCTAGCGACCATTCCAGAGACCTTTGATATTCCCATCCAGAGGGTGAGAAAATTCATGAAGACATCTTTGACATCATAGACCGAGAAGCAGATGGAAGTGACAGTTTGGAGGTGAAGTTATGGAGTGGGGGAAGGAATGGGCAGGGAGGCCGAAGAGTGCTGGGGACAGGTCAGGAGGTGGCCTGGATAGGTAATATGAGGGGAGCAattcaattcaaaacccgtttatggagcatcagatgtgggatattgaggtgaataagatataatctttgttctcaaggaagtcataaatctgaatggCACCGGCCCCTTAGGCATGAGTCATTCAGCTGCTTCTCCAGCTCCAAACCTTCCCAAGGAGCCTCAGCCTGGATGCATAAGAGGAAGCTTTGAGACATTGGCGTTTTGGGAATGGAGAATGAACCAAGCCGAAGTCTCTCCCCCAGATCCTTGGAGACTGCCTCTCCATCTCTCCCCATGCTGGGTGCGATATgttcctggcttacagctcttataacccatgtaatttcctaagggactagagcaataatagtatgttttgttaaaatatttgaccttttgtccttggtttctgaaacagctccagaacagctccagagtgataaaggtgaaagacagtcttttgttATTTATAACAAGCCCGTTTCTTTTAGTTTAATCTTTCATTTTATTTTAATTAGTTAATTTTACTAACCACTGTACTAAGGAGGAACAAGTGCCTTTCAACCAAACCTGAGCttatgttaaagaggcgatttttggaaagtccca</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG021843]] |
Revision as of 07:01, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053746 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
856 nt |
Genomic location |
chr17+:40812278..40813409 |
Exon number |
2 |
Exons |
40812278..40812380,40812657..40813409 |
Genome context |
|
Sequence |
000001 TACCTGTCGG AACATGGAGG AGGAGCTGGC AACAACTGGG CCAGCGGATT CTCCCAGGTG TCCTAGCGAC CATTCCAGAG 000080
000081 ACCTTTGATA TTCCCATCCA GAGGGTGAGA AAATTCATGA AGACATCTTT GACATCATAG ACCGAGAAGC AGATGGAAGT 000160 000161 GACAGTTTGG AGGTGAAGTT ATGGAGTGGG GGAAGGAATG GGCAGGGAGG CCGAAGAGTG CTGGGGACAG GTCAGGAGGT 000240 000241 GGCCTGGATA GGTAATATGA GGGGAGCAat tcaattcaaa acccgtttat ggagcatcag atgtgggata ttgaggtgaa 000320 000321 taagatataa tctttgttct caaggaagtc ataaatctga atggCACCGG CCCCTTAGGC ATGAGTCATT CAGCTGCTTC 000400 000401 TCCAGCTCCA AACCTTCCCA AGGAGCCTCA GCCTGGATGC ATAAGAGGAA GCTTTGAGAC ATTGGCGTTT TGGGAATGGA 000480 000481 GAATGAACCA AGCCGAAGTC TCTCCCCCAG ATCCTTGGAG ACTGCCTCTC CATCTCTCCC CATGCTGGGT GCGATATgtt 000560 000561 cctggcttac agctcttata acccatgtaa tttcctaagg gactagagca ataatagtat gttttgttaa aatatttgac 000640 000641 cttttgtcct tggtttctga aacagctcca gaacagctcc agagtgataa aggtgaaaga cagtcttttg ttATTTATAA 000720 000721 CAAGCCCGTT TCTTTTAGTT TAATCTTTCA TTTTATTTTA ATTAGTTAAT TTTACTAACC ACTGTACTAA GGAGGAACAA 000800 000801 GTGCCTTTCA ACCAAACCTG AGCttatgtt aaagaggcga tttttggaaa gtccca |
Predicted Small Protein
Name | NONHSAT053746_smProtein_380:580 |
Length | 67 |
Molecular weight | 7494.5731 |
Aromaticity | 0.106060606061 |
Instability index | 61.4136363636 |
Isoelectric point | 6.70050048828 |
Runs | 7 |
Runs residual | 0.0445472690982 |
Runs probability | 0.0392283039341 |
Amino acid sequence | MSHSAASPAPNLPKEPQPGCIRGSFETLAFWEWRMNQAEVSPPDPWRLPLHLSPCWVRYV PGLQLL |
Secondary structure | LLLLLLLLLLLLLLLLLLLEELLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLEEEEL LLLLLL |
PRMN | - |
PiMo | - |