Difference between revisions of "NONHSAT056364"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>CCGCGCAGAGCCGGCGGCCAGCCTGGGAGCGGCCCAGAGGGCGCCCGGCGGGTGCAGTGGACGTCGTCAGCGCGCCGCGTGGGGGCCTTTGCAGATTAAGGGACCTCCGCGGCCCCGCGCGGAGCGCTCTGTCACTGATGATGGAGGGGCCACGGCGGTCCGCACCATCCCCCGTGCCTCAGTTTTCCCATCTGTGAGGCTCATGGTGTGACCAGGGACCTCCGTTTTAAAATCACCCACTTTCTTTTTCTTCCTTCTCCTCTCACCCCTTCATCCCGTCCCTCTCTGGACACTGCGCCCCTCTGCGCattccagaggggaccctcatcctgaaacaattcccggcgcggaaccccagctgaatgctcctgcttggggcggggggtcgccaacaattagtccaacatcctcgacagccacccctcctaaccgacaactgcccacgacagccatgggaacaagacacagaccctgcccttaccccactccccacggtgcccacGGCAAGTTTCCCTAGaagaactcgatggcagcctgggcaacatagagagaccccatctctacaaaaaaaatcatttaaaaaaattagctgggcgtggtggtgcacctgaagaggctgaggcaagaggatcgtttgagcccagggagctccaggctgcagtgagtcgtgatcataccactgcactccagcctggatgacaaagtgagatcttgcctcaaaaactaacaaacacacaaaaCCTGAGGATAAATTTTTAATTTTAGGGTGGCACtttatttattgtttgtttgttttttggagacagtctcactctataccccaggctggagtgcagtggcgtgatcttggctcactgcaaactccacctcccagttcaagtgattctcatgcctcagcctcccgag</dnaseq>|
 
sequence = <dnaseq>CCGCGCAGAGCCGGCGGCCAGCCTGGGAGCGGCCCAGAGGGCGCCCGGCGGGTGCAGTGGACGTCGTCAGCGCGCCGCGTGGGGGCCTTTGCAGATTAAGGGACCTCCGCGGCCCCGCGCGGAGCGCTCTGTCACTGATGATGGAGGGGCCACGGCGGTCCGCACCATCCCCCGTGCCTCAGTTTTCCCATCTGTGAGGCTCATGGTGTGACCAGGGACCTCCGTTTTAAAATCACCCACTTTCTTTTTCTTCCTTCTCCTCTCACCCCTTCATCCCGTCCCTCTCTGGACACTGCGCCCCTCTGCGCattccagaggggaccctcatcctgaaacaattcccggcgcggaaccccagctgaatgctcctgcttggggcggggggtcgccaacaattagtccaacatcctcgacagccacccctcctaaccgacaactgcccacgacagccatgggaacaagacacagaccctgcccttaccccactccccacggtgcccacGGCAAGTTTCCCTAGaagaactcgatggcagcctgggcaacatagagagaccccatctctacaaaaaaaatcatttaaaaaaattagctgggcgtggtggtgcacctgaagaggctgaggcaagaggatcgtttgagcccagggagctccaggctgcagtgagtcgtgatcataccactgcactccagcctggatgacaaagtgagatcttgcctcaaaaactaacaaacacacaaaaCCTGAGGATAAATTTTTAATTTTAGGGTGGCACtttatttattgtttgtttgttttttggagacagtctcactctataccccaggctggagtgcagtggcgtgatcttggctcactgcaaactccacctcccagttcaagtgattctcatgcctcagcctcccgag</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG022950]]

Revision as of 08:19, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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You can also add sub-section(s) at will.

Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT056364

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

906 nt

Genomic location

chr17-:78233157..78234062

Exon number

1

Exons

78233157..78234062

Genome context

Sequence
000001 CCGCGCAGAG CCGGCGGCCA GCCTGGGAGC GGCCCAGAGG GCGCCCGGCG GGTGCAGTGG ACGTCGTCAG CGCGCCGCGT 000080
000081 GGGGGCCTTT GCAGATTAAG GGACCTCCGC GGCCCCGCGC GGAGCGCTCT GTCACTGATG ATGGAGGGGC CACGGCGGTC 000160
000161 CGCACCATCC CCCGTGCCTC AGTTTTCCCA TCTGTGAGGC TCATGGTGTG ACCAGGGACC TCCGTTTTAA AATCACCCAC 000240
000241 TTTCTTTTTC TTCCTTCTCC TCTCACCCCT TCATCCCGTC CCTCTCTGGA CACTGCGCCC CTCTGCGCat tccagagggg 000320
000321 accctcatcc tgaaacaatt cccggcgcgg aaccccagct gaatgctcct gcttggggcg gggggtcgcc aacaattagt 000400
000401 ccaacatcct cgacagccac ccctcctaac cgacaactgc ccacgacagc catgggaaca agacacagac cctgccctta 000480
000481 ccccactccc cacggtgccc acGGCAAGTT TCCCTAGaag aactcgatgg cagcctgggc aacatagaga gaccccatct 000560
000561 ctacaaaaaa aatcatttaa aaaaattagc tgggcgtggt ggtgcacctg aagaggctga ggcaagagga tcgtttgagc 000640
000641 ccagggagct ccaggctgca gtgagtcgtg atcataccac tgcactccag cctggatgac aaagtgagat cttgcctcaa 000720
000721 aaactaacaa acacacaaaa CCTGAGGATA AATTTTTAAT TTTAGGGTGG CACtttattt attgtttgtt tgttttttgg 000800
000801 agacagtctc actctatacc ccaggctgga gtgcagtggc gtgatcttgg ctcactgcaa actccacctc ccagttcaag 000880
000881 tgattctcat gcctcagcct cccgag
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Predicted Small Protein

Name NONHSAT056364_smProtein_362:610
Length 83
Molecular weight 9496.7951
Aromaticity 0.0853658536585
Instability index 59.5036585366
Isoelectric point 10.4183959961
Runs 9
Runs residual 0.0261456023651
Runs probability 0.0402265010108
Amino acid sequence MLLLGAGGRQQLVQHPRQPPLLTDNCPRQPWEQDTDPALTPLPTVPTASFPRRTRWQPGQ
HRETPSLQKKSFKKISWAWWCT
Secondary structure LEEELLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLHHHHHHHLLLEEEEELL
PRMN -
PiMo -