Difference between revisions of "NONHSAT060677"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
Line 42: Line 42:
 
sequence = <dnaseq>caaaaaaaaaaaaaaaaaaaaaaaaaagaaagacagggtgtcactgtgtcacccaggctgtagtgcagtggtgtgatcatagctcactgtagcattcaactcctggggtcaagcaatcctcccacctcagtatcctgagtagctgggactacaggcatgcaccaccgtgccttgctgatttttttaatagagagggggttttgctatgttgcgcaatctgatcccaaattcctggcctcaattgatcctcctgcctcagcctcccaaagtgctagcattacaggtgcataccaccacactaggcttattttaaaatttgtctgtagagatggggttttgctatgttgcccagtctgatcccagattcctagcctcaagtgatcctcctgcctcagcttcccaaagtgctaggattacaggtgtgcaccaccacactaggctaatttttaaatttgtctgtagagatggggttttgctatgttgcccaggctggcctccaactactggccccaagtaatcctcctgcctcagcctcccaaggcactgggattacaggcgtgagccaccatgctcggctatcacacataaattcttgtaactaaccacagatgagatacagaactattcggtccccacaaagatctctctaaagctactccctgggagtgacccccaccccattcctaaccctaggcaacccctaatctcttctccagtctacaactttattatttcaagaatattataggacgggtgtggtggctcacacccataatcccagcactttgggaggctgaggcgggtggatcacttgagccccg</dnaseq>|
 
sequence = <dnaseq>caaaaaaaaaaaaaaaaaaaaaaaaaagaaagacagggtgtcactgtgtcacccaggctgtagtgcagtggtgtgatcatagctcactgtagcattcaactcctggggtcaagcaatcctcccacctcagtatcctgagtagctgggactacaggcatgcaccaccgtgccttgctgatttttttaatagagagggggttttgctatgttgcgcaatctgatcccaaattcctggcctcaattgatcctcctgcctcagcctcccaaagtgctagcattacaggtgcataccaccacactaggcttattttaaaatttgtctgtagagatggggttttgctatgttgcccagtctgatcccagattcctagcctcaagtgatcctcctgcctcagcttcccaaagtgctaggattacaggtgtgcaccaccacactaggctaatttttaaatttgtctgtagagatggggttttgctatgttgcccaggctggcctccaactactggccccaagtaatcctcctgcctcagcctcccaaggcactgggattacaggcgtgagccaccatgctcggctatcacacataaattcttgtaactaaccacagatgagatacagaactattcggtccccacaaagatctctctaaagctactccctgggagtgacccccaccccattcctaaccctaggcaacccctaatctcttctccagtctacaactttattatttcaagaatattataggacgggtgtggtggctcacacccataatcccagcactttgggaggctgaggcgggtggatcacttgagccccg</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG024552]]

Revision as of 09:47, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT060677

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

821 nt

Genomic location

chr19+:5181326..5182146

Exon number

1

Exons

5181326..5182146

Genome context

Sequence
000001 caaaaaaaaa aaaaaaaaaa aaaaaaagaa agacagggtg tcactgtgtc acccaggctg tagtgcagtg gtgtgatcat 000080
000081 agctcactgt agcattcaac tcctggggtc aagcaatcct cccacctcag tatcctgagt agctgggact acaggcatgc 000160
000161 accaccgtgc cttgctgatt tttttaatag agagggggtt ttgctatgtt gcgcaatctg atcccaaatt cctggcctca 000240
000241 attgatcctc ctgcctcagc ctcccaaagt gctagcatta caggtgcata ccaccacact aggcttattt taaaatttgt 000320
000321 ctgtagagat ggggttttgc tatgttgccc agtctgatcc cagattccta gcctcaagtg atcctcctgc ctcagcttcc 000400
000401 caaagtgcta ggattacagg tgtgcaccac cacactaggc taatttttaa atttgtctgt agagatgggg ttttgctatg 000480
000481 ttgcccaggc tggcctccaa ctactggccc caagtaatcc tcctgcctca gcctcccaag gcactgggat tacaggcgtg 000560
000561 agccaccatg ctcggctatc acacataaat tcttgtaact aaccacagat gagatacaga actattcggt ccccacaaag 000640
000641 atctctctaa agctactccc tgggagtgac ccccacccca ttcctaaccc taggcaaccc ctaatctctt ctccagtcta 000720
000721 caactttatt atttcaagaa tattatagga cgggtgtggt ggctcacacc cataatccca gcactttggg aggctgaggc 000800
000801 gggtggatca cttgagcccc g
[back to top]

Predicted Small Protein

Name NONHSAT060677_smProtein_464:601
Length 46
Molecular weight 4565.0918
Aromaticity 0.0444444444444
Instability index 47.2444444444
Isoelectric point 7.88812255859
Runs 7
Runs residual 0.00669191919192
Runs probability 0.0452973982387
Amino acid sequence MGFCYVAQAGLQLLAPSNPPASASQGTGITGVSHHARLSHINSCN
Secondary structure LLLHHHHHHHHHHHLLLLLLLLLLLLLLEEEEELLLLEEEELLLL
PRMN -
PiMo -