Difference between revisions of "NONHSAT060805"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTCTGCCTCCGAGGAGTCCCTTACTGATGATCATAGGCTCCTCAAGGTCATCAGCCAGGGCAGCTTTGCAGAAGTCAAGGCAGCTGGCCCAGCACATTCTCACTGGGACCAAGATGGCTGTGGAGGTCACCCCAACAGGGCAGCAGGGCTCCTGCAGCCCCCAGGGTCTGTACTGCAGGGACCATATGATGAAGGCCCTTAATCACCCGAAGATCATCAGACCCACGTGGCTGGCACCGAGAACAGGCTGTTCCTAGTCATGGATTAAGCCAGCTCGGGAGAGCTATCCGACTTCACCCTCGAATTCTTCTTGAAGGGGGAAGAGGCCTGAGGCAAGTTCCAGCAAATAGGATATTCCATGCAGTGAGGCTTCCAGAAGGAAATTATCCACAGGGATCTGAAGTCAGAGAACTTCCCTGAGGAGGCTCAGCACGACATGGAAACAACAGACGCTGGCTTTGATACCAGATTCACCGTAGGCTGAAAGCTGATCCCCTTCGGTGGGAGCTCCTCTTATACAGCCTCAGAACTGTTCCCCGGGACAAAAGTACGATGTACCCTGGTGGGCGTGTGGAGCCTGGGAGCCACTGTCTACACCATGGTGGCCGAGGACTGCCATCTGTTGGGCAGACTTTTGTGGGGCTGAGGACGACACTAATACTGTGTGAATGGTGACAGGCGATCCCATTCCTTGTTTCCATAGAACGAGAATGCCTCATAAACACAATTCTGGCCGTTGACTCCAGGGAGAGGCCCTCACTAGCCCTCATCATGGGGCGCCTATGGATTAACATGGGCCAGGAGGAGACGCTAACTAAGGCCATACTGGGAGCTGCTCCCCGATCACCCGGAGTCTGGAAAGCGCTCCTGGTGTCCCCGGGAGATGAGGCAGACCATGTCCCATCGTTGTTGAAAAAATATGTGATGATACCATGGCCGGCTATCAGATCCTGGGCTGCAGGAAACCCGAGGTGTGGGGCGCCATCATCACAGTGAAGCTCCTGCCTTCAGCAGATCCTACTACTTGCCGCCATTCTCCCCCATCACATGAAAAAAACTCCTC</dnaseq>| | sequence = <dnaseq>TTCTGCCTCCGAGGAGTCCCTTACTGATGATCATAGGCTCCTCAAGGTCATCAGCCAGGGCAGCTTTGCAGAAGTCAAGGCAGCTGGCCCAGCACATTCTCACTGGGACCAAGATGGCTGTGGAGGTCACCCCAACAGGGCAGCAGGGCTCCTGCAGCCCCCAGGGTCTGTACTGCAGGGACCATATGATGAAGGCCCTTAATCACCCGAAGATCATCAGACCCACGTGGCTGGCACCGAGAACAGGCTGTTCCTAGTCATGGATTAAGCCAGCTCGGGAGAGCTATCCGACTTCACCCTCGAATTCTTCTTGAAGGGGGAAGAGGCCTGAGGCAAGTTCCAGCAAATAGGATATTCCATGCAGTGAGGCTTCCAGAAGGAAATTATCCACAGGGATCTGAAGTCAGAGAACTTCCCTGAGGAGGCTCAGCACGACATGGAAACAACAGACGCTGGCTTTGATACCAGATTCACCGTAGGCTGAAAGCTGATCCCCTTCGGTGGGAGCTCCTCTTATACAGCCTCAGAACTGTTCCCCGGGACAAAAGTACGATGTACCCTGGTGGGCGTGTGGAGCCTGGGAGCCACTGTCTACACCATGGTGGCCGAGGACTGCCATCTGTTGGGCAGACTTTTGTGGGGCTGAGGACGACACTAATACTGTGTGAATGGTGACAGGCGATCCCATTCCTTGTTTCCATAGAACGAGAATGCCTCATAAACACAATTCTGGCCGTTGACTCCAGGGAGAGGCCCTCACTAGCCCTCATCATGGGGCGCCTATGGATTAACATGGGCCAGGAGGAGACGCTAACTAAGGCCATACTGGGAGCTGCTCCCCGATCACCCGGAGTCTGGAAAGCGCTCCTGGTGTCCCCGGGAGATGAGGCAGACCATGTCCCATCGTTGTTGAAAAAATATGTGATGATACCATGGCCGGCTATCAGATCCTGGGCTGCAGGAAACCCGAGGTGTGGGGCGCCATCATCACAGTGAAGCTCCTGCCTTCAGCAGATCCTACTACTTGCCGCCATTCTCCCCCATCACATGAAAAAAACTCCTC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG024631]] |
Revision as of 09:51, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT060805 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1063 nt |
| Genomic location |
chr19-:7005023..7006085 |
| Exon number |
1 |
| Exons |
7005023..7006085 |
| Genome context |
|
| Sequence |
000001 TTCTGCCTCC GAGGAGTCCC TTACTGATGA TCATAGGCTC CTCAAGGTCA TCAGCCAGGG CAGCTTTGCA GAAGTCAAGG 000080
000081 CAGCTGGCCC AGCACATTCT CACTGGGACC AAGATGGCTG TGGAGGTCAC CCCAACAGGG CAGCAGGGCT CCTGCAGCCC 000160 000161 CCAGGGTCTG TACTGCAGGG ACCATATGAT GAAGGCCCTT AATCACCCGA AGATCATCAG ACCCACGTGG CTGGCACCGA 000240 000241 GAACAGGCTG TTCCTAGTCA TGGATTAAGC CAGCTCGGGA GAGCTATCCG ACTTCACCCT CGAATTCTTC TTGAAGGGGG 000320 000321 AAGAGGCCTG AGGCAAGTTC CAGCAAATAG GATATTCCAT GCAGTGAGGC TTCCAGAAGG AAATTATCCA CAGGGATCTG 000400 000401 AAGTCAGAGA ACTTCCCTGA GGAGGCTCAG CACGACATGG AAACAACAGA CGCTGGCTTT GATACCAGAT TCACCGTAGG 000480 000481 CTGAAAGCTG ATCCCCTTCG GTGGGAGCTC CTCTTATACA GCCTCAGAAC TGTTCCCCGG GACAAAAGTA CGATGTACCC 000560 000561 TGGTGGGCGT GTGGAGCCTG GGAGCCACTG TCTACACCAT GGTGGCCGAG GACTGCCATC TGTTGGGCAG ACTTTTGTGG 000640 000641 GGCTGAGGAC GACACTAATA CTGTGTGAAT GGTGACAGGC GATCCCATTC CTTGTTTCCA TAGAACGAGA ATGCCTCATA 000720 000721 AACACAATTC TGGCCGTTGA CTCCAGGGAG AGGCCCTCAC TAGCCCTCAT CATGGGGCGC CTATGGATTA ACATGGGCCA 000800 000801 GGAGGAGACG CTAACTAAGG CCATACTGGG AGCTGCTCCC CGATCACCCG GAGTCTGGAA AGCGCTCCTG GTGTCCCCGG 000880 000881 GAGATGAGGC AGACCATGTC CCATCGTTGT TGAAAAAATA TGTGATGATA CCATGGCCGG CTATCAGATC CTGGGCTGCA 000960 000961 GGAAACCCGA GGTGTGGGGC GCCATCATCA CAGTGAAGCT CCTGCCTTCA GCAGATCCTA CTACTTGCCG CCATTCTCCC 001040 001041 CCATCACATG AAAAAAACTC CTC |
Predicted Small Protein
| Name | NONHSAT060805_smProtein_26:256 |
| Length | 77 |
| Molecular weight | 8261.5781 |
| Aromaticity | 0.0263157894737 |
| Instability index | 58.2407894737 |
| Isoelectric point | 10.5409545898 |
| Runs | 12 |
| Runs residual | 0.0164851784634 |
| Runs probability | 0.0420199611377 |
| Amino acid sequence | MIIGSSRSSARAALQKSRQLAQHILTGTKMAVEVTPTGQQGSCSPQGLYCRDHMMKALNH PKIIRPTWLAPRTGCS |
| Secondary structure | LEELLLLHHHHHHHHHHHHHHHHHHHLLLEEEEELLLLLLLLLLLLLLEEHHHHHHHLLL LLEELLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
