Difference between revisions of "NONHSAT068160"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>GACTGGGTGGATGAGGCTCACCCCGGCGGGGAGAAGGGACGAGGAGGGGCGGACAGCGGAAGGTCCGGGAGTGTCCGCCATAAAGTCGTTTGAGTTTTAACTTCTAGTCATGGCGAATGATCGCAGGAGAGCACAGACTGGACCCTGCTACGATCTCTCTTGGAGTGGATCAGACTGATGATCACCAACAACCAACTCATTCCCGGATAAGGAAGAAGAGAGTGTCACCTACTTCAGTGTGGTTTCAACCCTACTTCTGCATCTTAAAGACACTTGTACAACGTTGGACACTGTGCAGGATGATGCCACTTCATCTTGGATGCTAATCTGCCATGTTGACTTCTGATTAACCCCAGGCCCAGGAATGCCTCAAGATTTCTACTTTACTTACTGTTGCTTGTGTAAGCCAAGACAACCTTGATGTTATCATAAACATGTACTTACCTAAGTCCTGTCCTTTGGCAAATTATGGGCTATGAGACACAGCATTCTTGCCTTTCCCTGAGGGGTCAATTTCAGCGATCCTACACATTCCTTCTGAAGCACTTATGCTCTTTCTATATGGTATGTAAGCTCTCGGTCTGGGGAGTAACAGTGCAGAGATCTACCTGTCTTGTTGCCACATGTTTCTAAACTTTCCAATAAATCACCTTCTACTGAC</dnaseq>| | sequence = <dnaseq>GACTGGGTGGATGAGGCTCACCCCGGCGGGGAGAAGGGACGAGGAGGGGCGGACAGCGGAAGGTCCGGGAGTGTCCGCCATAAAGTCGTTTGAGTTTTAACTTCTAGTCATGGCGAATGATCGCAGGAGAGCACAGACTGGACCCTGCTACGATCTCTCTTGGAGTGGATCAGACTGATGATCACCAACAACCAACTCATTCCCGGATAAGGAAGAAGAGAGTGTCACCTACTTCAGTGTGGTTTCAACCCTACTTCTGCATCTTAAAGACACTTGTACAACGTTGGACACTGTGCAGGATGATGCCACTTCATCTTGGATGCTAATCTGCCATGTTGACTTCTGATTAACCCCAGGCCCAGGAATGCCTCAAGATTTCTACTTTACTTACTGTTGCTTGTGTAAGCCAAGACAACCTTGATGTTATCATAAACATGTACTTACCTAAGTCCTGTCCTTTGGCAAATTATGGGCTATGAGACACAGCATTCTTGCCTTTCCCTGAGGGGTCAATTTCAGCGATCCTACACATTCCTTCTGAAGCACTTATGCTCTTTCTATATGGTATGTAAGCTCTCGGTCTGGGGAGTAACAGTGCAGAGATCTACCTGTCTTGTTGCCACATGTTTCTAAACTTTCCAATAAATCACCTTCTACTGAC</dnaseq>| | ||
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− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG026631]] |
Revision as of 11:50, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT068160 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
661 nt |
Genomic location |
chr19+:56989552..57006804 |
Exon number |
3 |
Exons |
56989552..56989645,57005532..57005711,57006417..57006804 |
Genome context |
|
Sequence |
000001 GACTGGGTGG ATGAGGCTCA CCCCGGCGGG GAGAAGGGAC GAGGAGGGGC GGACAGCGGA AGGTCCGGGA GTGTCCGCCA 000080
000081 TAAAGTCGTT TGAGTTTTAA CTTCTAGTCA TGGCGAATGA TCGCAGGAGA GCACAGACTG GACCCTGCTA CGATCTCTCT 000160 000161 TGGAGTGGAT CAGACTGATG ATCACCAACA ACCAACTCAT TCCCGGATAA GGAAGAAGAG AGTGTCACCT ACTTCAGTGT 000240 000241 GGTTTCAACC CTACTTCTGC ATCTTAAAGA CACTTGTACA ACGTTGGACA CTGTGCAGGA TGATGCCACT TCATCTTGGA 000320 000321 TGCTAATCTG CCATGTTGAC TTCTGATTAA CCCCAGGCCC AGGAATGCCT CAAGATTTCT ACTTTACTTA CTGTTGCTTG 000400 000401 TGTAAGCCAA GACAACCTTG ATGTTATCAT AAACATGTAC TTACCTAAGT CCTGTCCTTT GGCAAATTAT GGGCTATGAG 000480 000481 ACACAGCATT CTTGCCTTTC CCTGAGGGGT CAATTTCAGC GATCCTACAC ATTCCTTCTG AAGCACTTAT GCTCTTTCTA 000560 000561 TATGGTATGT AAGCTCTCGG TCTGGGGAGT AACAGTGCAG AGATCTACCT GTCTTGTTGC CACATGTTTC TAAACTTTCC 000640 000641 AATAAATCAC CTTCTACTGA C |
Predicted Small Protein
Name | NONHSAT068160_smProtein_116:325 |
Length | 70 |
Molecular weight | 8046.3464 |
Aromaticity | 0.0724637681159 |
Instability index | 44.1753623188 |
Isoelectric point | 9.41424560547 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.0479695381656 |
Amino acid sequence | MIAGEHRLDPATISLGVDQTDDHQQPTHSRIRKKRVSPTSVWFQPYFCILKTLVQRWTLC RMMPLHLGC |
Secondary structure | LLLLLLLLLLLEEEELLLLLLLLLLLLLLLEEELLLLLLEEEELLHHHHHHHHHHHHHHH HHLLLLLLL |
PRMN | - |
PiMo | - |