Difference between revisions of "NONHSAT068829"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>gtgttgacaTGTTTTCAGCTACTAACATTTTCTTTTTCTTCTTTTCTTCCCTTTTGATAAACAGGAGAAAGAGCAAATGAGAGGCAGTTGCACTTTTTCAGGTGTCAGGCTGGAGGAAGCCACTTGAAGATGAATCTACCTCTGCCTTAGGATTGCCTGATGGCCTGTGCCATTCCATGTTATATCTACTGATTTGCTCCCTGTATTCAAAGATTTTTTTTTTTTACTTAATTCTCTCTTACTGACCCTGAGAGTGACCATATTTTTAACCAATTTGGTCTTCAGCCTCAAAACTTAGCTCTTTCCTTTTGTGGTCCCCGAATCCTATCACGTGTCATGGTGGCTGTGAAGATGTTTGCCAAGCCTGCTGAGAAGGCTCATCTGTGGCATCCAAAAGCAGAGATTTCAACTCTGGACCCCTGTGACCTGCCTTTGTAATTATGGATACCCAGCACTGTTTTGAAATATCAGTGGACATCCAGTTTTTAAAAGCCCTCAGAGCTTTGGGAGACACCCCTTTATCTCTCTGGCATGTCAGAGAACCGATTCAACCCTTCTCATCTCCTCCTCCTTCCCTCTCTTGGGCCATCAGGATGCGGCAGCAACTCACTGTGCATGTTTTTACAGCTCTTCTCCAGTAATGCTGCCATTTCCACTGCAGACCACAGGATAAAAGGACCGCTTCACCGTGGCCCAGGATACCCTTTTAAGTAGGAGGTAACTATTCAGTTTCGTAGTGGCCCATACATAAACTTGATTATGTTCTTCGTTGCTCCAATATACTATTTGTGTGTTTTGTTTTTTCCAGAGGGAGAAGAAAGTACTGCTTTGATCTAAAATTAAGCAAACGTTCTTCAATAAACCCACCATGAGACTTGACCACTAATGGTGACCAGCAGTGGCTTTGTCATGGCCCTGCCCACTGGGGGCAGGCACATGCCGGGGCCAGGGCAGGCTGCCAGCTGGTGAGCACGAATAGGTGGCTGGTGGAGCGCATGCAGTGGGAAGGGCAGATGGCTCCATTTTGATTTGTTAGCAGGCCACTTCCTCGGAAGGGGCTTTCCCTTCAGTGGGGTCTGCACCGCCAGCCTCAGCTGTCTTGGAGCAGATGTGTATAGTTAGAGATGGGGACCTTTTCACTGTAAATACTGCTCACATGTTCCTAGGCTGACTTTACTATGTGCAGAGCCTCTTCTCAAATATCCAAATCCCCTCTGTTGGGTACTACAGAACAGATGTTACCCTGCCTCCTATTACATTAATTTACGAACTTTACATATGCTGAGTTACGGACCCTAAGCTGTTGCATGTGCTTGGCTCTTATGTTCCAAAAAGTACATTTGTATGGTTTTGTGGAAACTGTGCTGTTCTGCTTTTGCAGTCTGTGAGATTCTGATTTTTTTTTTCTCATCAGCAATTATCCTTGTCTTGGAACATCAGAGCTTGAAGAAAGGGATTCTAGCAGCCCACCTCTCTCCTTCCTAATCCAGATGGTTAGAGGCTTAGAGAGAGGTGGTGGTTGCTCTGAGTTTACCAGATTCAGTGACAAACCCCTTCTAATTTCTAATCAATCTGGCAGCCTTCATTTACCAAAAGTTGACTTTTGATAGTATAACTTTTATACACCGTGAGACAACTTATTTTAAAAAACAGTTTAGAAATATTTAATTTTTTTTTGAAAGACTTTTTAAggtcaggcaccatgggtcatgcctatcatctcaacgctttgaggactgaagtgggaggatcatttgaggccaagatttcaagatcagcttgggcaacatagtgagactctgtctctaaaaaattaaaaaaaaaaatagccaggtgtggtggcgcatgcctgtagtcccagctacttcggaggctgaagtgggaggatccattgagcctaagagatggcgattgagtaagccatgattgcaccactgcactccagcctggacgacagag</dnaseq>|
 
sequence = <dnaseq>gtgttgacaTGTTTTCAGCTACTAACATTTTCTTTTTCTTCTTTTCTTCCCTTTTGATAAACAGGAGAAAGAGCAAATGAGAGGCAGTTGCACTTTTTCAGGTGTCAGGCTGGAGGAAGCCACTTGAAGATGAATCTACCTCTGCCTTAGGATTGCCTGATGGCCTGTGCCATTCCATGTTATATCTACTGATTTGCTCCCTGTATTCAAAGATTTTTTTTTTTTACTTAATTCTCTCTTACTGACCCTGAGAGTGACCATATTTTTAACCAATTTGGTCTTCAGCCTCAAAACTTAGCTCTTTCCTTTTGTGGTCCCCGAATCCTATCACGTGTCATGGTGGCTGTGAAGATGTTTGCCAAGCCTGCTGAGAAGGCTCATCTGTGGCATCCAAAAGCAGAGATTTCAACTCTGGACCCCTGTGACCTGCCTTTGTAATTATGGATACCCAGCACTGTTTTGAAATATCAGTGGACATCCAGTTTTTAAAAGCCCTCAGAGCTTTGGGAGACACCCCTTTATCTCTCTGGCATGTCAGAGAACCGATTCAACCCTTCTCATCTCCTCCTCCTTCCCTCTCTTGGGCCATCAGGATGCGGCAGCAACTCACTGTGCATGTTTTTACAGCTCTTCTCCAGTAATGCTGCCATTTCCACTGCAGACCACAGGATAAAAGGACCGCTTCACCGTGGCCCAGGATACCCTTTTAAGTAGGAGGTAACTATTCAGTTTCGTAGTGGCCCATACATAAACTTGATTATGTTCTTCGTTGCTCCAATATACTATTTGTGTGTTTTGTTTTTTCCAGAGGGAGAAGAAAGTACTGCTTTGATCTAAAATTAAGCAAACGTTCTTCAATAAACCCACCATGAGACTTGACCACTAATGGTGACCAGCAGTGGCTTTGTCATGGCCCTGCCCACTGGGGGCAGGCACATGCCGGGGCCAGGGCAGGCTGCCAGCTGGTGAGCACGAATAGGTGGCTGGTGGAGCGCATGCAGTGGGAAGGGCAGATGGCTCCATTTTGATTTGTTAGCAGGCCACTTCCTCGGAAGGGGCTTTCCCTTCAGTGGGGTCTGCACCGCCAGCCTCAGCTGTCTTGGAGCAGATGTGTATAGTTAGAGATGGGGACCTTTTCACTGTAAATACTGCTCACATGTTCCTAGGCTGACTTTACTATGTGCAGAGCCTCTTCTCAAATATCCAAATCCCCTCTGTTGGGTACTACAGAACAGATGTTACCCTGCCTCCTATTACATTAATTTACGAACTTTACATATGCTGAGTTACGGACCCTAAGCTGTTGCATGTGCTTGGCTCTTATGTTCCAAAAAGTACATTTGTATGGTTTTGTGGAAACTGTGCTGTTCTGCTTTTGCAGTCTGTGAGATTCTGATTTTTTTTTTCTCATCAGCAATTATCCTTGTCTTGGAACATCAGAGCTTGAAGAAAGGGATTCTAGCAGCCCACCTCTCTCCTTCCTAATCCAGATGGTTAGAGGCTTAGAGAGAGGTGGTGGTTGCTCTGAGTTTACCAGATTCAGTGACAAACCCCTTCTAATTTCTAATCAATCTGGCAGCCTTCATTTACCAAAAGTTGACTTTTGATAGTATAACTTTTATACACCGTGAGACAACTTATTTTAAAAAACAGTTTAGAAATATTTAATTTTTTTTTGAAAGACTTTTTAAggtcaggcaccatgggtcatgcctatcatctcaacgctttgaggactgaagtgggaggatcatttgaggccaagatttcaagatcagcttgggcaacatagtgagactctgtctctaaaaaattaaaaaaaaaaatagccaggtgtggtggcgcatgcctgtagtcccagctacttcggaggctgaagtgggaggatccattgagcctaagagatggcgattgagtaagccatgattgcaccactgcactccagcctggacgacagag</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG026890]]

Revision as of 12:02, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT068829

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1959 nt

Genomic location

chr2+:6108654..6110612

Exon number

1

Exons

6108654..6110612

Genome context

Sequence
000001 gtgttgacaT GTTTTCAGCT ACTAACATTT TCTTTTTCTT CTTTTCTTCC CTTTTGATAA ACAGGAGAAA GAGCAAATGA 000080
000081 GAGGCAGTTG CACTTTTTCA GGTGTCAGGC TGGAGGAAGC CACTTGAAGA TGAATCTACC TCTGCCTTAG GATTGCCTGA 000160
000161 TGGCCTGTGC CATTCCATGT TATATCTACT GATTTGCTCC CTGTATTCAA AGATTTTTTT TTTTTACTTA ATTCTCTCTT 000240
000241 ACTGACCCTG AGAGTGACCA TATTTTTAAC CAATTTGGTC TTCAGCCTCA AAACTTAGCT CTTTCCTTTT GTGGTCCCCG 000320
000321 AATCCTATCA CGTGTCATGG TGGCTGTGAA GATGTTTGCC AAGCCTGCTG AGAAGGCTCA TCTGTGGCAT CCAAAAGCAG 000400
000401 AGATTTCAAC TCTGGACCCC TGTGACCTGC CTTTGTAATT ATGGATACCC AGCACTGTTT TGAAATATCA GTGGACATCC 000480
000481 AGTTTTTAAA AGCCCTCAGA GCTTTGGGAG ACACCCCTTT ATCTCTCTGG CATGTCAGAG AACCGATTCA ACCCTTCTCA 000560
000561 TCTCCTCCTC CTTCCCTCTC TTGGGCCATC AGGATGCGGC AGCAACTCAC TGTGCATGTT TTTACAGCTC TTCTCCAGTA 000640
000641 ATGCTGCCAT TTCCACTGCA GACCACAGGA TAAAAGGACC GCTTCACCGT GGCCCAGGAT ACCCTTTTAA GTAGGAGGTA 000720
000721 ACTATTCAGT TTCGTAGTGG CCCATACATA AACTTGATTA TGTTCTTCGT TGCTCCAATA TACTATTTGT GTGTTTTGTT 000800
000801 TTTTCCAGAG GGAGAAGAAA GTACTGCTTT GATCTAAAAT TAAGCAAACG TTCTTCAATA AACCCACCAT GAGACTTGAC 000880
000881 CACTAATGGT GACCAGCAGT GGCTTTGTCA TGGCCCTGCC CACTGGGGGC AGGCACATGC CGGGGCCAGG GCAGGCTGCC 000960
000961 AGCTGGTGAG CACGAATAGG TGGCTGGTGG AGCGCATGCA GTGGGAAGGG CAGATGGCTC CATTTTGATT TGTTAGCAGG 001040
001041 CCACTTCCTC GGAAGGGGCT TTCCCTTCAG TGGGGTCTGC ACCGCCAGCC TCAGCTGTCT TGGAGCAGAT GTGTATAGTT 001120
001121 AGAGATGGGG ACCTTTTCAC TGTAAATACT GCTCACATGT TCCTAGGCTG ACTTTACTAT GTGCAGAGCC TCTTCTCAAA 001200
001201 TATCCAAATC CCCTCTGTTG GGTACTACAG AACAGATGTT ACCCTGCCTC CTATTACATT AATTTACGAA CTTTACATAT 001280
001281 GCTGAGTTAC GGACCCTAAG CTGTTGCATG TGCTTGGCTC TTATGTTCCA AAAAGTACAT TTGTATGGTT TTGTGGAAAC 001360
001361 TGTGCTGTTC TGCTTTTGCA GTCTGTGAGA TTCTGATTTT TTTTTTCTCA TCAGCAATTA TCCTTGTCTT GGAACATCAG 001440
001441 AGCTTGAAGA AAGGGATTCT AGCAGCCCAC CTCTCTCCTT CCTAATCCAG ATGGTTAGAG GCTTAGAGAG AGGTGGTGGT 001520
001521 TGCTCTGAGT TTACCAGATT CAGTGACAAA CCCCTTCTAA TTTCTAATCA ATCTGGCAGC CTTCATTTAC CAAAAGTTGA 001600
001601 CTTTTGATAG TATAACTTTT ATACACCGTG AGACAACTTA TTTTAAAAAA CAGTTTAGAA ATATTTAATT TTTTTTTGAA 001680
001681 AGACTTTTTA Aggtcaggca ccatgggtca tgcctatcat ctcaacgctt tgaggactga agtgggagga tcatttgagg 001760
001761 ccaagatttc aagatcagct tgggcaacat agtgagactc tgtctctaaa aaattaaaaa aaaaaatagc caggtgtggt 001840
001841 ggcgcatgcc tgtagtccca gctacttcgg aggctgaagt gggaggatcc attgagccta agagatggcg attgagtaag 001920
001921 ccatgattgc accactgcac tccagcctgg acgacagag
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Predicted Small Protein

Name NONHSAT068829_smProtein_440:640
Length 67
Molecular weight 7599.7699
Aromaticity 0.0909090909091
Instability index 46.8984848485
Isoelectric point 6.81109619141
Runs 8
Runs residual 0.0293957539467
Runs probability 0.0469881646353
Amino acid sequence MDTQHCFEISVDIQFLKALRALGDTPLSLWHVREPIQPFSSPPPSLSWAIRMRQQLTVHV
FTALLQ
Secondary structure LLLLLEEEEEEHHHHHHHHHHHLLLLLLHHHLLLLLLLLLLLLLLHHHHHHHHHHHHHHH
HHHHHL
PRMN -
PiMo -