Difference between revisions of "NONHSAT075919"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>CCAGGATCTGAGAGAAACCAAAAAAAAGTGGGGAGATAATAATCCAGGGACTTTGGGTAGTTGTTAAATGGATGGCTGTATCATAAGTATTGAAGCTGATAAGGGATAGATATGGGTTGATTATATATTTGTTTTGCTGGAAAATGTTCCATGATACAGTTTTAATAACAGTTTTAATTTCAGAAACGCAAAATATTGTTTTTACAACTAAGATAACATTGAAATTTATACAGAACCCCAAATGACAAGTGTATAATCAACTGCCAGGAAATCAGTTTACCTGTTAGAGGTAGAAAAGTTACAGGATAAAAATGGAATTGGTTGGCACTAAGTAGGACCACTTTCGAAGAGAATGGGTAGAATTCATTTTCTTTTCATTACTTCCTTTCAGCGTGGAGCCTGAGCATCATTTCACCATTTTGAGCCTCAAGCTCTCAATATACTGGAAAATTGTAATCCTGTTCCCTTCACTGAGGTCATAATACTGAATTCTGAAATGGAAATAATTGACTAGAGATTGTCTAGTCAAACTAGACTGATGAGGTCTCACCATTTTCTTCAAGGAAGATCAACTGAACCTGCCTGAAGGCACAGGGTACACCATCTTCCTAAGGTGTGACCTCCTGTTCCCAAAGGAATAGACCTAGGTGACCAACCAGCAGCACCTAGCTTTTGCCAGCTACGCAGCTTTGAATAGCCTTCCACCCTTGTGTCCTTCAAACCCCATTCTTGCCAAAGCCAAGTTCTCTCCCTCCCTCTCAACAGATTTCTCAGCACACATCAGATTTCACACCGATCTATGAAAAACTATTTTTAGAGATTATtactatggtccgaatgtttatatcccctcctgctctccctaaaattatgttgaaatcctaacccccaaggtaatggtattaggaatgtgaggcctttgggaagggtttaagtcatgagggcagagacctcctttttgagattggtacacttataaaagagaccccagtatcttgctcgtcccttctgccatgggagaacacggtgagagcgagccatctgtaaaccaacaaacaaggccctcaccaggcactcaatctgccagcactttgatagtggacttcccagcctccagaactatgagaaataaatgtgtttttttaagccagccagttcattttgttatagcagcctggacagacAATATATTGAAAAAAATCAGTTTTGCAGTTCCACTGGTCAGGTGAATGCCAGAGGAGCTGGTCCACAGTCATAGGCGTTAAACTTCTTTTGGAAACTATACTGGCTTGACAGTCTCCCCATACTGATTCAGACTCCAGCAAGGTGCACATCACCCGCTAGTCATTGTGGCTTCTGCTGCTTTAAGGTTCTGGAATTATGGAAGAAAATAGGGTGGGCCTACTGTCTCTTCCCACTGTTTACCTGGTGTTTTGATTCTGAATAGTTTATAAGCTCTGCTATTCAAGAAGTTTATACAAACCCGTAATGTACTACCAAACCGTTCATTCATTATGACAAAACTGCCTACCAAAGCCACAGACTTTAAGTCTTTGCAGGATTACCACTGAAAGTTCACATGCTTGGTTAGCAGTCTTAACCTCTAACCAACTGAACAAATCGAAGACATTTAATTTAGTCAAAATAGGCATGGGAATGAAAGTGAGACTTAGAGGCAAAGAATGAggccaggtgcggtggctcacacctgtaactccagcactttggaaggcccaggcagaaggattcctgcagaccaggatttcaagaccagcctggacaacctggtgaaacctcctctctacaagaaaattcaaaaattagccaggcgtggtagggtatgcctgtagtcccagctacttgggaggctgaggtgggaggactgcttgagcccaggaggtccaggctgcagtgagccgtgatcacaccactgcactccagactgggaggcagaggaaga</dnaseq>|
 
sequence = <dnaseq>CCAGGATCTGAGAGAAACCAAAAAAAAGTGGGGAGATAATAATCCAGGGACTTTGGGTAGTTGTTAAATGGATGGCTGTATCATAAGTATTGAAGCTGATAAGGGATAGATATGGGTTGATTATATATTTGTTTTGCTGGAAAATGTTCCATGATACAGTTTTAATAACAGTTTTAATTTCAGAAACGCAAAATATTGTTTTTACAACTAAGATAACATTGAAATTTATACAGAACCCCAAATGACAAGTGTATAATCAACTGCCAGGAAATCAGTTTACCTGTTAGAGGTAGAAAAGTTACAGGATAAAAATGGAATTGGTTGGCACTAAGTAGGACCACTTTCGAAGAGAATGGGTAGAATTCATTTTCTTTTCATTACTTCCTTTCAGCGTGGAGCCTGAGCATCATTTCACCATTTTGAGCCTCAAGCTCTCAATATACTGGAAAATTGTAATCCTGTTCCCTTCACTGAGGTCATAATACTGAATTCTGAAATGGAAATAATTGACTAGAGATTGTCTAGTCAAACTAGACTGATGAGGTCTCACCATTTTCTTCAAGGAAGATCAACTGAACCTGCCTGAAGGCACAGGGTACACCATCTTCCTAAGGTGTGACCTCCTGTTCCCAAAGGAATAGACCTAGGTGACCAACCAGCAGCACCTAGCTTTTGCCAGCTACGCAGCTTTGAATAGCCTTCCACCCTTGTGTCCTTCAAACCCCATTCTTGCCAAAGCCAAGTTCTCTCCCTCCCTCTCAACAGATTTCTCAGCACACATCAGATTTCACACCGATCTATGAAAAACTATTTTTAGAGATTATtactatggtccgaatgtttatatcccctcctgctctccctaaaattatgttgaaatcctaacccccaaggtaatggtattaggaatgtgaggcctttgggaagggtttaagtcatgagggcagagacctcctttttgagattggtacacttataaaagagaccccagtatcttgctcgtcccttctgccatgggagaacacggtgagagcgagccatctgtaaaccaacaaacaaggccctcaccaggcactcaatctgccagcactttgatagtggacttcccagcctccagaactatgagaaataaatgtgtttttttaagccagccagttcattttgttatagcagcctggacagacAATATATTGAAAAAAATCAGTTTTGCAGTTCCACTGGTCAGGTGAATGCCAGAGGAGCTGGTCCACAGTCATAGGCGTTAAACTTCTTTTGGAAACTATACTGGCTTGACAGTCTCCCCATACTGATTCAGACTCCAGCAAGGTGCACATCACCCGCTAGTCATTGTGGCTTCTGCTGCTTTAAGGTTCTGGAATTATGGAAGAAAATAGGGTGGGCCTACTGTCTCTTCCCACTGTTTACCTGGTGTTTTGATTCTGAATAGTTTATAAGCTCTGCTATTCAAGAAGTTTATACAAACCCGTAATGTACTACCAAACCGTTCATTCATTATGACAAAACTGCCTACCAAAGCCACAGACTTTAAGTCTTTGCAGGATTACCACTGAAAGTTCACATGCTTGGTTAGCAGTCTTAACCTCTAACCAACTGAACAAATCGAAGACATTTAATTTAGTCAAAATAGGCATGGGAATGAAAGTGAGACTTAGAGGCAAAGAATGAggccaggtgcggtggctcacacctgtaactccagcactttggaaggcccaggcagaaggattcctgcagaccaggatttcaagaccagcctggacaacctggtgaaacctcctctctacaagaaaattcaaaaattagccaggcgtggtagggtatgcctgtagtcccagctacttgggaggctgaggtgggaggactgcttgagcccaggaggtccaggctgcagtgagccgtgatcacaccactgcactccagactgggaggcagaggaaga</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:NONHSAG030014]]

Revision as of 06:23, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT075919

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1960 nt

Genomic location

chr2+:183650679..183652638

Exon number

1

Exons

183650679..183652638

Genome context

Sequence
000001 CCAGGATCTG AGAGAAACCA AAAAAAAGTG GGGAGATAAT AATCCAGGGA CTTTGGGTAG TTGTTAAATG GATGGCTGTA 000080
000081 TCATAAGTAT TGAAGCTGAT AAGGGATAGA TATGGGTTGA TTATATATTT GTTTTGCTGG AAAATGTTCC ATGATACAGT 000160
000161 TTTAATAACA GTTTTAATTT CAGAAACGCA AAATATTGTT TTTACAACTA AGATAACATT GAAATTTATA CAGAACCCCA 000240
000241 AATGACAAGT GTATAATCAA CTGCCAGGAA ATCAGTTTAC CTGTTAGAGG TAGAAAAGTT ACAGGATAAA AATGGAATTG 000320
000321 GTTGGCACTA AGTAGGACCA CTTTCGAAGA GAATGGGTAG AATTCATTTT CTTTTCATTA CTTCCTTTCA GCGTGGAGCC 000400
000401 TGAGCATCAT TTCACCATTT TGAGCCTCAA GCTCTCAATA TACTGGAAAA TTGTAATCCT GTTCCCTTCA CTGAGGTCAT 000480
000481 AATACTGAAT TCTGAAATGG AAATAATTGA CTAGAGATTG TCTAGTCAAA CTAGACTGAT GAGGTCTCAC CATTTTCTTC 000560
000561 AAGGAAGATC AACTGAACCT GCCTGAAGGC ACAGGGTACA CCATCTTCCT AAGGTGTGAC CTCCTGTTCC CAAAGGAATA 000640
000641 GACCTAGGTG ACCAACCAGC AGCACCTAGC TTTTGCCAGC TACGCAGCTT TGAATAGCCT TCCACCCTTG TGTCCTTCAA 000720
000721 ACCCCATTCT TGCCAAAGCC AAGTTCTCTC CCTCCCTCTC AACAGATTTC TCAGCACACA TCAGATTTCA CACCGATCTA 000800
000801 TGAAAAACTA TTTTTAGAGA TTATtactat ggtccgaatg tttatatccc ctcctgctct ccctaaaatt atgttgaaat 000880
000881 cctaaccccc aaggtaatgg tattaggaat gtgaggcctt tgggaagggt ttaagtcatg agggcagaga cctccttttt 000960
000961 gagattggta cacttataaa agagacccca gtatcttgct cgtcccttct gccatgggag aacacggtga gagcgagcca 001040
001041 tctgtaaacc aacaaacaag gccctcacca ggcactcaat ctgccagcac tttgatagtg gacttcccag cctccagaac 001120
001121 tatgagaaat aaatgtgttt ttttaagcca gccagttcat tttgttatag cagcctggac agacAATATA TTGAAAAAAA 001200
001201 TCAGTTTTGC AGTTCCACTG GTCAGGTGAA TGCCAGAGGA GCTGGTCCAC AGTCATAGGC GTTAAACTTC TTTTGGAAAC 001280
001281 TATACTGGCT TGACAGTCTC CCCATACTGA TTCAGACTCC AGCAAGGTGC ACATCACCCG CTAGTCATTG TGGCTTCTGC 001360
001361 TGCTTTAAGG TTCTGGAATT ATGGAAGAAA ATAGGGTGGG CCTACTGTCT CTTCCCACTG TTTACCTGGT GTTTTGATTC 001440
001441 TGAATAGTTT ATAAGCTCTG CTATTCAAGA AGTTTATACA AACCCGTAAT GTACTACCAA ACCGTTCATT CATTATGACA 001520
001521 AAACTGCCTA CCAAAGCCAC AGACTTTAAG TCTTTGCAGG ATTACCACTG AAAGTTCACA TGCTTGGTTA GCAGTCTTAA 001600
001601 CCTCTAACCA ACTGAACAAA TCGAAGACAT TTAATTTAGT CAAAATAGGC ATGGGAATGA AAGTGAGACT TAGAGGCAAA 001680
001681 GAATGAggcc aggtgcggtg gctcacacct gtaactccag cactttggaa ggcccaggca gaaggattcc tgcagaccag 001760
001761 gatttcaaga ccagcctgga caacctggtg aaacctcctc tctacaagaa aattcaaaaa ttagccaggc gtggtagggt 001840
001841 atgcctgtag tcccagctac ttgggaggct gaggtgggag gactgcttga gcccaggagg tccaggctgc agtgagccgt 001920
001921 gatcacacca ctgcactcca gactgggagg cagaggaaga
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Predicted Small Protein

Name NONHSAT075919_smProtein_1013:1228
Length 72
Molecular weight 7824.8853
Aromaticity 0.0704225352113
Instability index 53.7549295775
Isoelectric point 9.18389892578
Runs 10
Runs residual 0.00770941438102
Runs probability 0.0693870340929
Amino acid sequence MGEHGESEPSVNQQTRPSPGTQSASTLIVDFPASRTMRNKCVFLSQPVHFVIAAWTDNIL
KKISFAVPLVR
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLEEEEELLLEEEEEEEHHHHHH
HHLLEELLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH
HHHLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTT
TTTiiiiiiii