Difference between revisions of "NONHSAT078744"

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sequence = <dnaseq>AATTCGAAAGAATCAGCGTTCTTCAGTTAAAATATACAGGGGCGGTCCCTGGGGAGGGATGAAGCAGGGATGATTTTCTGTCCTCATCTGCAACCCTAAAGGCAGATCCTGTCCGAAGCTGCTGAAAGCATGGAGCATGGGAAGCACCTGGGAAGAACACCTGGCACTCAAAAGCACAGGAGGTCACCAAAGTGTGAATGATTTGGAGACCAAGGCAAGAACTCTGGCTCTGGAATCAAATCAGGAGAATGCCCTAATTGCGACTGTACTGCTATTGTTGAGAAGACAACTTGACAACTCACTGTTGGTGAAGTAACTTTCTGAAGACTTGAACCTCATGCATTTCCTCCAGAAACAGACACAAGTGGAGGACCCAAGGTTAGGGATGAGGAGCACATGATGATAGGGCCATGTGGCACCTCAGGGACTTGTTAATCGGTCATGTAATTAGGAGCCTCTTGCTTGGCTCTGCTTGCATTAATGTTTGTGTGGTTTGTAATGTCTGTGTAATGTGAGAAGAGACAAGCCAAATAGAAAATAAAGATGGTTTCTTGCTTCTCATGAGATGCTT</dnaseq>|
 
sequence = <dnaseq>AATTCGAAAGAATCAGCGTTCTTCAGTTAAAATATACAGGGGCGGTCCCTGGGGAGGGATGAAGCAGGGATGATTTTCTGTCCTCATCTGCAACCCTAAAGGCAGATCCTGTCCGAAGCTGCTGAAAGCATGGAGCATGGGAAGCACCTGGGAAGAACACCTGGCACTCAAAAGCACAGGAGGTCACCAAAGTGTGAATGATTTGGAGACCAAGGCAAGAACTCTGGCTCTGGAATCAAATCAGGAGAATGCCCTAATTGCGACTGTACTGCTATTGTTGAGAAGACAACTTGACAACTCACTGTTGGTGAAGTAACTTTCTGAAGACTTGAACCTCATGCATTTCCTCCAGAAACAGACACAAGTGGAGGACCCAAGGTTAGGGATGAGGAGCACATGATGATAGGGCCATGTGGCACCTCAGGGACTTGTTAATCGGTCATGTAATTAGGAGCCTCTTGCTTGGCTCTGCTTGCATTAATGTTTGTGTGGTTTGTAATGTCTGTGTAATGTGAGAAGAGACAAGCCAAATAGAAAATAAAGATGGTTTCTTGCTTCTCATGAGATGCTT</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG031328]]

Revision as of 07:39, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT078744

Source

NONCODE4.0

Same with

,

Classification

sense

Length

571 nt

Genomic location

chr20+:16730019..16750707

Exon number

3

Exons

16730019..16730119,16744967..16745047,16750319..16750707

Genome context

Sequence
000001 AATTCGAAAG AATCAGCGTT CTTCAGTTAA AATATACAGG GGCGGTCCCT GGGGAGGGAT GAAGCAGGGA TGATTTTCTG 000080
000081 TCCTCATCTG CAACCCTAAA GGCAGATCCT GTCCGAAGCT GCTGAAAGCA TGGAGCATGG GAAGCACCTG GGAAGAACAC 000160
000161 CTGGCACTCA AAAGCACAGG AGGTCACCAA AGTGTGAATG ATTTGGAGAC CAAGGCAAGA ACTCTGGCTC TGGAATCAAA 000240
000241 TCAGGAGAAT GCCCTAATTG CGACTGTACT GCTATTGTTG AGAAGACAAC TTGACAACTC ACTGTTGGTG AAGTAACTTT 000320
000321 CTGAAGACTT GAACCTCATG CATTTCCTCC AGAAACAGAC ACAAGTGGAG GACCCAAGGT TAGGGATGAG GAGCACATGA 000400
000401 TGATAGGGCC ATGTGGCACC TCAGGGACTT GTTAATCGGT CATGTAATTA GGAGCCTCTT GCTTGGCTCT GCTTGCATTA 000480
000481 ATGTTTGTGT GGTTTGTAAT GTCTGTGTAA TGTGAGAAGA GACAAGCCAA ATAGAAAATA AAGATGGTTT CTTGCTTCTC 000560
000561 ATGAGATGCT T
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Predicted Small Protein

Name NONHSAT078744_smProtein_410:514
Length 35
Molecular weight 3781.6709
Aromaticity 0.0294117647059
Instability index 43.7470588235
Isoelectric point 7.71575927734
Runs 5
Runs residual 0.0390915860015
Runs probability 0.0127715951245
Amino acid sequence MWHLRDLLIGHVIRSLLLGSACINVCVVCNVCVM
Secondary structure LLHHHHHHHHHHHHHHHHLLLEEEEEEEEEEEEL
PRMN LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLL
PiMo iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToo