Difference between revisions of "NONHSAT079142"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>ATGTGTGGGTCCAAAGAGCTCAAATTTGTACATCTTTCCAGAAAAAGTACTACCCTTCCCCTCCCCCAAAAGTGGCTTTTTTAAAGCTTTTGTGTCATTTTCCCATTTGTGCCCATGGACACTGGGTATCCACAACTACAGCAGGAAAAGGCTTTGAGCAGAATCCCAGGACAGCTCTTGGTGGATTTGTCCTTCCTCAAGAGCAGGAGTGGATTGTTCTGAGCTGGCTTTGGTGTTTTCTTTCCCCAGAAAGCTTAGGTTTTATGCAGCTTGACACCTGGGAGAGGTGTCCAGGGTCTTAGATGTAGAAATGTGGCTTGGGAGACATTGGCCCATGACCCTAACACCAGGCGTGCAAATCCCCTTGGAGCCCAGACCCAGTGGCAGCCGGGGTTGCCGCCCACCTGCCTGTGCTGTGCACTGGGTGCCTTCTGCGCTCAGCTGCGGCCTTGTCTGTGAATCCGGAGTGCGGAGCCAGCGGGTGCCTGTAGTGGGTGGAATTGGGGTCTGCACTTGCCCCTCCGCCCCCAGGTGGGAGTCACCTGGAGCGTGAAGGGACGTGTCTCATCCCCAGTGTGTCGGACCCTGGAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCTCACCTACGTCAGCCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAGCTCACTCGGAAAATTGACAATGTTGAGACCAGCTGGGCTCTGGGGGCCATTTTTCATTACATCGACTCCCTGAACAGACAGAAGAGTCCAGCCTCATAGTGGCCGAGCCATCCCTGTCCCCGTCAGCAGTGTCTGTGTGTCTGCATAAACCCTCCTGTCCTGGACGTGACTTCATCCTGAGGAGCCACAGCACAGGCCGTGCTGGCACTTTCTGCACACTGGCTCTGGGACTTGCAGAAGGCCTGGTGCTGCCCTGGCATCAGCCTCTTCCAGTCACATCTGGCCAGAGGGCTGTCTGGACCTGGGCCCTGCTCAATGCCACCTGTCTGCCTGGGCTCCAAGTGGGCAGGACCAGGACAGAACCACAGGCACACACTGAGGGGGCAGTGTGGCTCCCTGCCTGTCCCATCCCCATGCCCCGTCCGCGGGGCTGTGGCTGCTGCTGTGCATGTCCCTGCGATGGGAGTCTTGTCTCCCAGCCTGTCAGTTTCCTCCCCAGGGCAGAGCTCCCCTTCCTGCAAGAGTCTGGGAGGCGGTGCAGGCTGTCCTGGCTGCTCTGGGGAAGCCGAGGGACAGCCATAACACCCCCGGGACAGTAGGTCTGGGCGGCACCACTGGGAACTCTGGACTTGAGTGTGTTTGCCTCTTCCTTGGGTATGAATGTGTGAGTTCACCCAGAGGCCTGCTCTCCTCACACATTGTGTGGTTTGGGGTTAATGATGGAGGGAGACACCTCCTCATAGACGGCAGGTGCCCACCTTTCAGGGAGTCTCCCAGCATGGGCGGATGCCGGGCATGAGCTGCTGTAAACTATTTGTGGCTGTGCTGCTTGAGTGACGTCTCTGTCGTGTGGGTGCCAAGTGCTTGTGTAGAAACTGTGTTCTGAGCCCCCTTTTCTGGACACCAACTGTGTCCTGTGAATGTATCGCTACTGTGAGCTGTTCCCGCCTAGCCAGGGCCATGTCTTAGGTGCAGCTGTGCCACGGGTCAGCTGAGCCACAGTCCCAGAACCAAGCTCTCGGTGTCTCGGGCCACCATCCGCCCACCTCGGGCTGACCCCACCTCCTCCATGGACAGTGTGAGCCCCGGGCCGTGCATCCTGCTCAGTGTGGCGTCAGTGTCGGGGCTGAGCCCCTTGAGCTGCTTCAGTGAATGTACAGTGCCCGGCACGAGCTGAACCTCATGTGTTCCACTCCCAATAAAAGGTTGACAGGGGCTTCTCCTTCTCTGG</dnaseq>|
 
sequence = <dnaseq>ATGTGTGGGTCCAAAGAGCTCAAATTTGTACATCTTTCCAGAAAAAGTACTACCCTTCCCCTCCCCCAAAAGTGGCTTTTTTAAAGCTTTTGTGTCATTTTCCCATTTGTGCCCATGGACACTGGGTATCCACAACTACAGCAGGAAAAGGCTTTGAGCAGAATCCCAGGACAGCTCTTGGTGGATTTGTCCTTCCTCAAGAGCAGGAGTGGATTGTTCTGAGCTGGCTTTGGTGTTTTCTTTCCCCAGAAAGCTTAGGTTTTATGCAGCTTGACACCTGGGAGAGGTGTCCAGGGTCTTAGATGTAGAAATGTGGCTTGGGAGACATTGGCCCATGACCCTAACACCAGGCGTGCAAATCCCCTTGGAGCCCAGACCCAGTGGCAGCCGGGGTTGCCGCCCACCTGCCTGTGCTGTGCACTGGGTGCCTTCTGCGCTCAGCTGCGGCCTTGTCTGTGAATCCGGAGTGCGGAGCCAGCGGGTGCCTGTAGTGGGTGGAATTGGGGTCTGCACTTGCCCCTCCGCCCCCAGGTGGGAGTCACCTGGAGCGTGAAGGGACGTGTCTCATCCCCAGTGTGTCGGACCCTGGAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCTCACCTACGTCAGCCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAGCTCACTCGGAAAATTGACAATGTTGAGACCAGCTGGGCTCTGGGGGCCATTTTTCATTACATCGACTCCCTGAACAGACAGAAGAGTCCAGCCTCATAGTGGCCGAGCCATCCCTGTCCCCGTCAGCAGTGTCTGTGTGTCTGCATAAACCCTCCTGTCCTGGACGTGACTTCATCCTGAGGAGCCACAGCACAGGCCGTGCTGGCACTTTCTGCACACTGGCTCTGGGACTTGCAGAAGGCCTGGTGCTGCCCTGGCATCAGCCTCTTCCAGTCACATCTGGCCAGAGGGCTGTCTGGACCTGGGCCCTGCTCAATGCCACCTGTCTGCCTGGGCTCCAAGTGGGCAGGACCAGGACAGAACCACAGGCACACACTGAGGGGGCAGTGTGGCTCCCTGCCTGTCCCATCCCCATGCCCCGTCCGCGGGGCTGTGGCTGCTGCTGTGCATGTCCCTGCGATGGGAGTCTTGTCTCCCAGCCTGTCAGTTTCCTCCCCAGGGCAGAGCTCCCCTTCCTGCAAGAGTCTGGGAGGCGGTGCAGGCTGTCCTGGCTGCTCTGGGGAAGCCGAGGGACAGCCATAACACCCCCGGGACAGTAGGTCTGGGCGGCACCACTGGGAACTCTGGACTTGAGTGTGTTTGCCTCTTCCTTGGGTATGAATGTGTGAGTTCACCCAGAGGCCTGCTCTCCTCACACATTGTGTGGTTTGGGGTTAATGATGGAGGGAGACACCTCCTCATAGACGGCAGGTGCCCACCTTTCAGGGAGTCTCCCAGCATGGGCGGATGCCGGGCATGAGCTGCTGTAAACTATTTGTGGCTGTGCTGCTTGAGTGACGTCTCTGTCGTGTGGGTGCCAAGTGCTTGTGTAGAAACTGTGTTCTGAGCCCCCTTTTCTGGACACCAACTGTGTCCTGTGAATGTATCGCTACTGTGAGCTGTTCCCGCCTAGCCAGGGCCATGTCTTAGGTGCAGCTGTGCCACGGGTCAGCTGAGCCACAGTCCCAGAACCAAGCTCTCGGTGTCTCGGGCCACCATCCGCCCACCTCGGGCTGACCCCACCTCCTCCATGGACAGTGTGAGCCCCGGGCCGTGCATCCTGCTCAGTGTGGCGTCAGTGTCGGGGCTGAGCCCCTTGAGCTGCTTCAGTGAATGTACAGTGCCCGGCACGAGCTGAACCTCATGTGTTCCACTCCCAATAAAAGGTTGACAGGGGCTTCTCCTTCTCTGG</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG031521]]

Revision as of 07:50, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT079142

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1918 nt

Genomic location

chr20+:25205267..25207365

Exon number

2

Exons

25205267..25205953,25206135..25207365

Genome context

Sequence
000001 ATGTGTGGGT CCAAAGAGCT CAAATTTGTA CATCTTTCCA GAAAAAGTAC TACCCTTCCC CTCCCCCAAA AGTGGCTTTT 000080
000081 TTAAAGCTTT TGTGTCATTT TCCCATTTGT GCCCATGGAC ACTGGGTATC CACAACTACA GCAGGAAAAG GCTTTGAGCA 000160
000161 GAATCCCAGG ACAGCTCTTG GTGGATTTGT CCTTCCTCAA GAGCAGGAGT GGATTGTTCT GAGCTGGCTT TGGTGTTTTC 000240
000241 TTTCCCCAGA AAGCTTAGGT TTTATGCAGC TTGACACCTG GGAGAGGTGT CCAGGGTCTT AGATGTAGAA ATGTGGCTTG 000320
000321 GGAGACATTG GCCCATGACC CTAACACCAG GCGTGCAAAT CCCCTTGGAG CCCAGACCCA GTGGCAGCCG GGGTTGCCGC 000400
000401 CCACCTGCCT GTGCTGTGCA CTGGGTGCCT TCTGCGCTCA GCTGCGGCCT TGTCTGTGAA TCCGGAGTGC GGAGCCAGCG 000480
000481 GGTGCCTGTA GTGGGTGGAA TTGGGGTCTG CACTTGCCCC TCCGCCCCCA GGTGGGAGTC ACCTGGAGCG TGAAGGGACG 000560
000561 TGTCTCATCC CCAGTGTGTC GGACCCTGGA GACACAGCCG CAGAGCAGCC CCTTCTCATG CATGGACCTC ACCTACGTCA 000640
000641 GCCTGCTACT CCAGGAGTTC GGCTTTCCCA GGAGCAAAGT GCTGAAGCTC ACTCGGAAAA TTGACAATGT TGAGACCAGC 000720
000721 TGGGCTCTGG GGGCCATTTT TCATTACATC GACTCCCTGA ACAGACAGAA GAGTCCAGCC TCATAGTGGC CGAGCCATCC 000800
000801 CTGTCCCCGT CAGCAGTGTC TGTGTGTCTG CATAAACCCT CCTGTCCTGG ACGTGACTTC ATCCTGAGGA GCCACAGCAC 000880
000881 AGGCCGTGCT GGCACTTTCT GCACACTGGC TCTGGGACTT GCAGAAGGCC TGGTGCTGCC CTGGCATCAG CCTCTTCCAG 000960
000961 TCACATCTGG CCAGAGGGCT GTCTGGACCT GGGCCCTGCT CAATGCCACC TGTCTGCCTG GGCTCCAAGT GGGCAGGACC 001040
001041 AGGACAGAAC CACAGGCACA CACTGAGGGG GCAGTGTGGC TCCCTGCCTG TCCCATCCCC ATGCCCCGTC CGCGGGGCTG 001120
001121 TGGCTGCTGC TGTGCATGTC CCTGCGATGG GAGTCTTGTC TCCCAGCCTG TCAGTTTCCT CCCCAGGGCA GAGCTCCCCT 001200
001201 TCCTGCAAGA GTCTGGGAGG CGGTGCAGGC TGTCCTGGCT GCTCTGGGGA AGCCGAGGGA CAGCCATAAC ACCCCCGGGA 001280
001281 CAGTAGGTCT GGGCGGCACC ACTGGGAACT CTGGACTTGA GTGTGTTTGC CTCTTCCTTG GGTATGAATG TGTGAGTTCA 001360
001361 CCCAGAGGCC TGCTCTCCTC ACACATTGTG TGGTTTGGGG TTAATGATGG AGGGAGACAC CTCCTCATAG ACGGCAGGTG 001440
001441 CCCACCTTTC AGGGAGTCTC CCAGCATGGG CGGATGCCGG GCATGAGCTG CTGTAAACTA TTTGTGGCTG TGCTGCTTGA 001520
001521 GTGACGTCTC TGTCGTGTGG GTGCCAAGTG CTTGTGTAGA AACTGTGTTC TGAGCCCCCT TTTCTGGACA CCAACTGTGT 001600
001601 CCTGTGAATG TATCGCTACT GTGAGCTGTT CCCGCCTAGC CAGGGCCATG TCTTAGGTGC AGCTGTGCCA CGGGTCAGCT 001680
001681 GAGCCACAGT CCCAGAACCA AGCTCTCGGT GTCTCGGGCC ACCATCCGCC CACCTCGGGC TGACCCCACC TCCTCCATGG 001760
001761 ACAGTGTGAG CCCCGGGCCG TGCATCCTGC TCAGTGTGGC GTCAGTGTCG GGGCTGAGCC CCTTGAGCTG CTTCAGTGAA 001840
001841 TGTACAGTGC CCGGCACGAG CTGAACCTCA TGTGTTCCAC TCCCAATAAA AGGTTGACAG GGGCTTCTCC TTCTCTGG
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Predicted Small Protein

Name NONHSAT079142_smProtein_1100:1285
Length 62
Molecular weight 6606.6907
Aromaticity 0.0655737704918
Instability index 75.1081967213
Isoelectric point 8.87701416016
Runs 9
Runs residual 0.00527605049934
Runs probability 0.041620051424
Amino acid sequence MPRPRGCGCCCACPCDGSLVSQPVSFLPRAELPFLQESGRRCRLSWLLWGSRGTAITPPG
Q
Secondary structure LLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLHHHLLLLEEEEEEEEELLLLEEELLLL
L
PRMN -
PiMo -