Difference between revisions of "NONHSAT080717"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>caagactccatctcaaaaaaaaaaaaaaaGTGGAGGGGACAAAGAAGCAGAGAAGGATGATCAGAAGGGGACCCCCAGCCCTTGGAGGAGAGACGGCAGCCTCAGGCCGCCACAAAGGATTTTGTGGAGTCGCCCCAGGCCTGACGGCGTTAATTATCCCTGGCTTTCATCTTGATGCTCTTGCAGGGGAGGCTCAAGATGCCTTGTGGCTCGACCCCTGCACGGAGCCCCCAGCCCAGCCTCCCCGTGGGTTGAAACCTTGATCTGGGCCTGACTGTGGCTGCTCTGGGGACATGCCCTCGTCCTTTGCTGAAGCTGAGGCTCCAGAGGGGGAGTCACTGCCACGAAGGTTGCCCAGAACTTTCCTTGCTGCAAAAAGCCCCAAGACTTCTCCCTGCCACACACACAGCTTTTGCCATCGCGTTCTAAAAGCTGACAGCTTTCTCTCCAACACTGTTCTCCCTGAGTAGGGTAAAGCTACACTTGGCTTCCCCAGTTTCCTGTTTCCTGCCTAGAAACAAATTTTTGTCAGTCTGCTTTTCAAATGGgatatatgattcacataccataaaattcaccactttatataa</dnaseq>| | sequence = <dnaseq>caagactccatctcaaaaaaaaaaaaaaaGTGGAGGGGACAAAGAAGCAGAGAAGGATGATCAGAAGGGGACCCCCAGCCCTTGGAGGAGAGACGGCAGCCTCAGGCCGCCACAAAGGATTTTGTGGAGTCGCCCCAGGCCTGACGGCGTTAATTATCCCTGGCTTTCATCTTGATGCTCTTGCAGGGGAGGCTCAAGATGCCTTGTGGCTCGACCCCTGCACGGAGCCCCCAGCCCAGCCTCCCCGTGGGTTGAAACCTTGATCTGGGCCTGACTGTGGCTGCTCTGGGGACATGCCCTCGTCCTTTGCTGAAGCTGAGGCTCCAGAGGGGGAGTCACTGCCACGAAGGTTGCCCAGAACTTTCCTTGCTGCAAAAAGCCCCAAGACTTCTCCCTGCCACACACACAGCTTTTGCCATCGCGTTCTAAAAGCTGACAGCTTTCTCTCCAACACTGTTCTCCCTGAGTAGGGTAAAGCTACACTTGGCTTCCCCAGTTTCCTGTTTCCTGCCTAGAAACAAATTTTTGTCAGTCTGCTTTTCAAATGGgatatatgattcacataccataaaattcaccactttatataa</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG032217]] |
Revision as of 08:32, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT080717 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
590 nt |
| Genomic location |
chr20+:60777795..60778624 |
| Exon number |
2 |
| Exons |
60777795..60777899,60778140..60778624 |
| Genome context |
|
| Sequence |
000001 caagactcca tctcaaaaaa aaaaaaaaaG TGGAGGGGAC AAAGAAGCAG AGAAGGATGA TCAGAAGGGG ACCCCCAGCC 000080
000081 CTTGGAGGAG AGACGGCAGC CTCAGGCCGC CACAAAGGAT TTTGTGGAGT CGCCCCAGGC CTGACGGCGT TAATTATCCC 000160 000161 TGGCTTTCAT CTTGATGCTC TTGCAGGGGA GGCTCAAGAT GCCTTGTGGC TCGACCCCTG CACGGAGCCC CCAGCCCAGC 000240 000241 CTCCCCGTGG GTTGAAACCT TGATCTGGGC CTGACTGTGG CTGCTCTGGG GACATGCCCT CGTCCTTTGC TGAAGCTGAG 000320 000321 GCTCCAGAGG GGGAGTCACT GCCACGAAGG TTGCCCAGAA CTTTCCTTGC TGCAAAAAGC CCCAAGACTT CTCCCTGCCA 000400 000401 CACACACAGC TTTTGCCATC GCGTTCTAAA AGCTGACAGC TTTCTCTCCA ACACTGTTCT CCCTGAGTAG GGTAAAGCTA 000480 000481 CACTTGGCTT CCCCAGTTTC CTGTTTCCTG CCTAGAAACA AATTTTTGTC AGTCTGCTTT TCAAATGGga tatatgattc 000560 000561 acataccata aaattcacca ctttatataa |
Predicted Small Protein
| Name | NONHSAT080717_smProtein_56:262 |
| Length | 69 |
| Molecular weight | 6966.9808 |
| Aromaticity | 0.0441176470588 |
| Instability index | 53.8588235294 |
| Isoelectric point | 6.69952392578 |
| Runs | 7 |
| Runs residual | 0.037559618442 |
| Runs probability | 0.036780477957 |
| Amino acid sequence | MIRRGPPALGGETAASGRHKGFCGVAPGLTALIIPGFHLDALAGEAQDALWLDPCTEPPA QPPRGLKP |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLLEEELLLLLLEEELLLLLHHHHHHHHHHHHHLLLLLLLLL LLLLLLLL |
| PRMN | - |
| PiMo | - |
