Difference between revisions of "NONHSAT087008"

Revision as of 10:15, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	NONHSAT087008
Source	NONCODE4.0
Same with	,
Classification	antisense
Length	4377 nt
Genomic location	chr22-:42392239..42398032
Exon number	3
Exons	42392239..42395473,42396305..42396490,42397077..42398032
Genome context
Sequence	000001 CCGGAGTCAA AGCCGATTCT CGGACCAGTC CCATCCCACA GCAGCCTGCC TCCTCTTTCG ACATCACAGA GGCTGCTGTG 000080 000081 TCCTTCGCCA AGGACTCCCT GGCAGGTGGA GTGGCCGCAG CCATCTCCAA GATGGCGGTA GCACCCATCG AGCGGGTCAA 000160 000161 GCTGCTGCTA CAGGTGCAGC ATGCCAGCAA GCAGATCACT GCAGATAAGC AATACAAGGG CATTAGAGAC TGCATGGTCT 000240 000241 GTATTCCCAA GGAGCACGGA GTCCTGTCCT GGTGCGGTAA CCTGGCCAGT GTCATCAGAT ACTTCCCCCA CCCAGGCTCT 000320 000321 TAACTTCACC TTCAAAGATA AATACAAGCA GATCTTCCTG GATGGTGTGG ACAAGAGATC CCAGTTTTGG CGCTACTTTG 000400 000401 CAGGGAATCT GGCATCAGGC GGTGCCACTG GGGCCACATC CTTGTGTTTT GTGTACCCTC TTGATTTTGC CCATACTCGT 000480 000481 GTAGCAGCTG ATGTGGGCAA AGCTGGAGCT GAAAGGGAAT TGCGAGGTTT CGGTGACTGC CTAGTTAAGA TCTACAAATC 000560 000561 TGACGGGATT AAGAGCCTGT ACCAAGGCTT TAACGTGTCT GTGCAGGGTA TTATCTACCG AGCTGCCTGC TGCCTACTTC 000640 000641 GGTAACTATG ACACTGCAAA GGGAATGCTT CCGGATCCCA AGAACACTCA CATTGTCATC AGTTGGATGA TGCACAGACT 000720 000721 GTCACTGCCG TTGCTGGGTT GACTTCCTAT TCATTTAACA CCATTTGCTG CTACATGATG ATGCAGTCAG GATGCAAAGG 000800 000801 AACTGACATC ATGTACACAG GCACATTTGA CTGCTGGAGG AAGATTACTC ATGATGAAGG AAGCAAAGCT GTTTTCAAGG 000880 000881 GTGCATGGTC CAGTGTTCTC AGAGGCATGG GTGGTGCTTT TGTGCTTGTC TTGTATGATG AAACCAAGAA GTACATTCAC 000960 000961 TCCTAATAAA TAACAAATTT GGAGAAATAA AAATATCTTa agaaaagaaa aaagaaaaga aaagaaaGGC TTCACACCAT 001040 001041 GGAATGACAA GTGCTCAAAT GGCTCTCAGT AAGTGCTCAC GGGGACACCA CTGTCAGAGT GGTGAGCAAT CATCTACCAC 001120 001121 AAAATGGAAC AAAGCAGCAG AGACATCTCC CTGGTTGGAG CAAGGAGGAA ACATGGCTTT AGAAAGTTTC CAGGTCCAAG 001200 001201 GAGAAGCCCC ACAACAGTTT GAGATCTTTC CAGAATGATC CACACTCGAC CTCCTCATCC CTCTTACCAA AGAGCGACAC 001280 001281 CTTGTTCGTG GAAGTAGGAG GAGATACACA CCCAGTACCT GTCCTCATCC AACAAAGTCG CAGGCACCCA AGGGCAGCCA 001360 001361 CGCTGCCACC GAAGGCCCCC GGCTGCTCAC AACCGCCGGT CAGCTCCGGC CTCTCTTCGA AGGACACACG CGTCTCGCAC 001440 001441 CCCCTCCCCG CCCCGCCCTG AGGAGACATG CGTCTGGGCC CCGCGCCTTG AAAAGGCGCA TTCCCACCCC CACCCCTCAA 001520 001521 ACGCGCGAGG CCACGCGTTC CGGCCTCCGC CACCTCCACA TGCCGGAACA CCAGTGAGGG GCGCGCGCTC CCAAAGGTCG 001600 001601 GGGGCGGAGC TAAGAGCGCC GCGCCCAAAA AAGGCGGCAA AGTCCCTGAC TCGCTGAGAG TTTGCGAGCC GCCATGTCTA 001680 001681 TCTCATTCGT CTCCTCTCCT CCGACAGCAC GCCGTGCTTC CCCTCAGGCA CCTTTCACCG TTAGGGATGA GGGCTCCGCG 001760 001761 GCGGTTCTCG GTGTGGCTCT GATTCACCGC CATCTTGCTT CGGGCCTCCT GCCGCCCCGT AGATGGAAAG GGGCGGGACC 001840 001841 TGCGCCGAGC TGTGGGGCGC GGTTCTGAAG GGGAGGGCGG AGATTATGAC GTAaggagga ggaggaggag gagCGAGACC 001920 001921 GGGTCACGTG GTGGGGCAGT GCCCGGGGAG CGGGGCGGAG TCAGGGTAGA GGCCCCCGCC GAGAAAGGGG AGAAAGAGGC 002000 002001 GGGCCCTGAG AATTGGCTCG AGCGCGAAGG GGTGAGTGAT AGGTGAGTGG CCTCCCGACC TCACCTGCCC CCTTAGCCCC 002080 002081 CTGCCTTTAG GTATGGACTT GGGTTGGTCC TGTCAGGAAT gatctcagct cactgcacct ccaacctccc atgctcaagc 002160 002161 catcttccca cctcaacctc ccATCCATTA CTCACTTTGG TTATGAAACA CTAGAAAATA ATGACTGAGG CCCGACCTGA 002240 002241 CGCCAACTGA AGATGAACTG ACCTCACAAA GTGTTTTCAT CTCTAATATC TGTGGCTATT TCTTACCAAG AGAGTCTCAC 002320 002321 CCTCCACACA TGGGTGAGAT GACATAATGG CTGATTTGGT CAAGGAGCAC AAATAAGACA GGCCAGGCAG TTACTGTTCA 002400 002401 AACAGCAATG TTTAGTTGTA CAACACATAA AGTCTAGCAA CAATTACAGG ACCAGTTTGA GTGTCTGTTT GCTTGTTTTC 002480 002481 AATTGGGAAA TTTAACTGTA ATGTCACCGT AAGATTGGCT GGGACTGGTA ACATTTAAGA AACGGGTTGT TCTTGCATCC 002560 002561 CCTAGGCGTG GGCCTCTTGC TCCATCAGGA CTTGGTTGTA GATGAATGGC CCACAAGTCA CCAGCCTTTG AGCAAGTTGT 002640 002641 GTCCAGGTGG AGACAGGAAG AGGGTGGGCA AAGGGGAATT CTATAAAGAC ACAGTGTGTG GGGCAGTGGC AGTCAACATT 002720 002721 CGCAAACATT CATGCATCTG ATGGGGGGCT TTGCCCTCCC TTGGGTATTT TCCATTAGCC TACAGTGACC ACCTGTGGTC 002800 002801 AGGCTAATTC ATTACTCACA TTAATGGGGA AGGGGGTTGG GGGTAGGAGT AGGTAGGGTA GGTGGGAAGA GATCCCTCTT 002880 002881 ATTGCTGAGT GGACAGAAGG GTGCTAGTTT TTCCTTAGCG TGTACATATT GTGGGTTTCT GGGGgtttgt gtgtgtgttt 002960 002961 agtttttgtt tgtttgtttg GACAGAAGAA AGTCAACTCC AGCAATGTCT TCTTAGGAAA ACCACTCTTC CTCAGTGGCT 003040 003041 GCGTTATGAG GTGGGGAGGA TGTACAACCG CACTCTGGGA CAGCCACAAG TGGTGATTTT TTAAAAAGTG ATCCTAGCCC 003120 003121 TTGCTCCCCA ACATCTGTAG TGACCCACCC TCATGAATAT CTTTAAGTAA TGAAGGAGAC ACCCTTGTCC CACTTTGGGG 003200 003201 CTCACACAGC TGATCTCAAT GAATCTAGTA AGCAGAAAAA TTGCTTTCTT GACCCTTTAA GGAAGCCAAG AGTAGCTCAT 003280 003281 GCAGATGAAT GGGTAGGGAG CAATGCCATT GCCCTTAGAG ATGGTTACAA GTAGCTGGGA TGGGCTTACA AGGGCAGAAG 003360 003361 GAGCTCTTGA TGAGTTCTTT CACCCTGCAG ATGGGCTAGG ACCGGCTGAC GCAGATGATG CAGTAGGGCT GTACTGGCAG 003440 003441 AACCCCACTC CACTGGGAGG AGAGGAGTGG TTTGGATAAA TGGAGGATGC AACTGGCCTA AAGAGGCAGC TGGCCCCTCC 003520 003521 CACCTACTGA GGGCTGAGAG GGGCTGTGGT GGTGAGCTGG ACGAGCACAG CACTAAAAAG GGCTTGGCCC TGCAGCAATA 003600 003601 ACAGCTGAGA GGAATGGAGT GAGAAGCAGC GCTTGAAATG GCCTTCATTC AGCAGTGGGG CAGGGGGTGG CTGGCACAGG 003680 003681 TGGAAGGACA GTGCCCAGGA GGCCTTCTCC CTGCAGGGGG GTTGAGAACG GTTGAGGGTG TGGAGACCAG CAGCTGGCAG 003760 003761 CAGACATATA AAATACCTTC TCCAGGGAGG CTCAGATCAT GGTTCAGGGG TGCCAGGCAC CATTCCTACT CAGCCTTTCC 003840 003841 AACGCCCACC TCCCATGCCC ATAGATCTTC CCCTGCTGGT CCAAGGTCTC CATACAGGAC TGCTTCTACA GTAGCCAAGG 003920 003921 ATCCCTGTTC TGTTGAAATG TATAACCTCT GGGCTGTAGC GCTGCTGCTG TTCTGTCCTG ACAGGTGCCT ACCCTGTAAC 004000 004001 TTTGTGAGCA AGGGAGGATG AGGGCTGGGT TGGCAGCCTC CAGGAAAGAC CGAGAGCATA GGTTGGGGTC ACTGGTGACC 004080 004081 TGATCACCGC CCCCCTTTCT CCTGGTCCAT TGAATCTTGG GTCTTGAGTC TATGTTTTTT TTCCTAGCAC CTGAGTGATA 004160 004161 AAAGACTGGG ATTATAAGTG CTGGGATTCA TAGAGGACCA GTGAAACACC TAGGCTGAAC CAGGAGATGG GACAGAAGGT 004240 004241 TGTATGAGGT TATTGTAAAC AGTTTCACTT AGTGTTTTCC CTTCCCTAAG GCTAAACTGT TTCCCTGGCC CCGAATTTCA 004320 004321 TGAATCTTAC AGATTAAAGG AAAAGAGTAA CTTACTTGTA CAACAAGCAG GGGAAAT

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Predicted Small Protein

Name	`NONHSAT087008_smProtein_1673:1867`
Length	`65`
Molecular weight	`6665.6287`
Aromaticity	`0.0625`
Instability index	`92.2578125`
Isoelectric point	`11.8787231445`
Runs	`7`
Runs residual	`0.03921875`
Runs probability	`0.0418906301261`
Amino acid sequence	`MSISFVSSPPTARRASPQAPFTVRDEGSAAVLGVALIHRHLASGLLPPRRWKGAGPAPSC GARF`
Secondary structure	`LEEEEELLLLLLLLLLLLLLLEELLLLLHHHHHHHHHHHHHHL`

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>CCGGAGTCAAAGCCGATTCTCGGACCAGTCCCATCCCACAGCAGCCTGCCTCCTCTTTCGACATCACAGAGGCTGCTGTGTCCTTCGCCAAGGACTCCCTGGCAGGTGGAGTGGCCGCAGCCATCTCCAAGATGGCGGTAGCACCCATCGAGCGGGTCAAGCTGCTGCTACAGGTGCAGCATGCCAGCAAGCAGATCACTGCAGATAAGCAATACAAGGGCATTAGAGACTGCATGGTCTGTATTCCCAAGGAGCACGGAGTCCTGTCCTGGTGCGGTAACCTGGCCAGTGTCATCAGATACTTCCCCCACCCAGGCTCTTAACTTCACCTTCAAAGATAAATACAAGCAGATCTTCCTGGATGGTGTGGACAAGAGATCCCAGTTTTGGCGCTACTTTGCAGGGAATCTGGCATCAGGCGGTGCCACTGGGGCCACATCCTTGTGTTTTGTGTACCCTCTTGATTTTGCCCATACTCGTGTAGCAGCTGATGTGGGCAAAGCTGGAGCTGAAAGGGAATTGCGAGGTTTCGGTGACTGCCTAGTTAAGATCTACAAATCTGACGGGATTAAGAGCCTGTACCAAGGCTTTAACGTGTCTGTGCAGGGTATTATCTACCGAGCTGCCTGCTGCCTACTTCGGTAACTATGACACTGCAAAGGGAATGCTTCCGGATCCCAAGAACACTCACATTGTCATCAGTTGGATGATGCACAGACTGTCACTGCCGTTGCTGGGTTGACTTCCTATTCATTTAACACCATTTGCTGCTACATGATGATGCAGTCAGGATGCAAAGGAACTGACATCATGTACACAGGCACATTTGACTGCTGGAGGAAGATTACTCATGATGAAGGAAGCAAAGCTGTTTTCAAGGGTGCATGGTCCAGTGTTCTCAGAGGCATGGGTGGTGCTTTTGTGCTTGTCTTGTATGATGAAACCAAGAAGTACATTCACTCCTAATAAATAACAAATTTGGAGAAATAAAAATATCTTaagaaaagaaaaaagaaaagaaaagaaaGGCTTCACACCATGGAATGACAAGTGCTCAAATGGCTCTCAGTAAGTGCTCACGGGGACACCACTGTCAGAGTGGTGAGCAATCATCTACCACAAAATGGAACAAAGCAGCAGAGACATCTCCCTGGTTGGAGCAAGGAGGAAACATGGCTTTAGAAAGTTTCCAGGTCCAAGGAGAAGCCCCACAACAGTTTGAGATCTTTCCAGAATGATCCACACTCGACCTCCTCATCCCTCTTACCAAAGAGCGACACCTTGTTCGTGGAAGTAGGAGGAGATACACACCCAGTACCTGTCCTCATCCAACAAAGTCGCAGGCACCCAAGGGCAGCCACGCTGCCACCGAAGGCCCCCGGCTGCTCACAACCGCCGGTCAGCTCCGGCCTCTCTTCGAAGGACACACGCGTCTCGCACCCCCTCCCCGCCCCGCCCTGAGGAGACATGCGTCTGGGCCCCGCGCCTTGAAAAGGCGCATTCCCACCCCCACCCCTCAAACGCGCGAGGCCACGCGTTCCGGCCTCCGCCACCTCCACATGCCGGAACACCAGTGAGGGGCGCGCGCTCCCAAAGGTCGGGGGCGGAGCTAAGAGCGCCGCGCCCAAAAAAGGCGGCAAAGTCCCTGACTCGCTGAGAGTTTGCGAGCCGCCATGTCTATCTCATTCGTCTCCTCTCCTCCGACAGCACGCCGTGCTTCCCCTCAGGCACCTTTCACCGTTAGGGATGAGGGCTCCGCGGCGGTTCTCGGTGTGGCTCTGATTCACCGCCATCTTGCTTCGGGCCTCCTGCCGCCCCGTAGATGGAAAGGGGCGGGACCTGCGCCGAGCTGTGGGGCGCGGTTCTGAAGGGGAGGGCGGAGATTATGACGTAaggaggaggaggaggaggagCGAGACCGGGTCACGTGGTGGGGCAGTGCCCGGGGAGCGGGGCGGAGTCAGGGTAGAGGCCCCCGCCGAGAAAGGGGAGAAAGAGGCGGGCCCTGAGAATTGGCTCGAGCGCGAAGGGGTGAGTGATAGGTGAGTGGCCTCCCGACCTCACCTGCCCCCTTAGCCCCCTGCCTTTAGGTATGGACTTGGGTTGGTCCTGTCAGGAATgatctcagctcactgcacctccaacctcccatgctcaagccatcttcccacctcaacctcccATCCATTACTCACTTTGGTTATGAAACACTAGAAAATAATGACTGAGGCCCGACCTGACGCCAACTGAAGATGAACTGACCTCACAAAGTGTTTTCATCTCTAATATCTGTGGCTATTTCTTACCAAGAGAGTCTCACCCTCCACACATGGGTGAGATGACATAATGGCTGATTTGGTCAAGGAGCACAAATAAGACAGGCCAGGCAGTTACTGTTCAAACAGCAATGTTTAGTTGTACAACACATAAAGTCTAGCAACAATTACAGGACCAGTTTGAGTGTCTGTTTGCTTGTTTTCAATTGGGAAATTTAACTGTAATGTCACCGTAAGATTGGCTGGGACTGGTAACATTTAAGAAACGGGTTGTTCTTGCATCCCCTAGGCGTGGGCCTCTTGCTCCATCAGGACTTGGTTGTAGATGAATGGCCCACAAGTCACCAGCCTTTGAGCAAGTTGTGTCCAGGTGGAGACAGGAAGAGGGTGGGCAAAGGGGAATTCTATAAAGACACAGTGTGTGGGGCAGTGGCAGTCAACATTCGCAAACATTCATGCATCTGATGGGGGGCTTTGCCCTCCCTTGGGTATTTTCCATTAGCCTACAGTGACCACCTGTGGTCAGGCTAATTCATTACTCACATTAATGGGGAAGGGGGTTGGGGGTAGGAGTAGGTAGGGTAGGTGGGAAGAGATCCCTCTTATTGCTGAGTGGACAGAAGGGTGCTAGTTTTTCCTTAGCGTGTACATATTGTGGGTTTCTGGGGgtttgtgtgtgtgtttagtttttgtttgtttgtttgGACAGAAGAAAGTCAACTCCAGCAATGTCTTCTTAGGAAAACCACTCTTCCTCAGTGGCTGCGTTATGAGGTGGGGAGGATGTACAACCGCACTCTGGGACAGCCACAAGTGGTGATTTTTTAAAAAGTGATCCTAGCCCTTGCTCCCCAACATCTGTAGTGACCCACCCTCATGAATATCTTTAAGTAATGAAGGAGACACCCTTGTCCCACTTTGGGGCTCACACAGCTGATCTCAATGAATCTAGTAAGCAGAAAAATTGCTTTCTTGACCCTTTAAGGAAGCCAAGAGTAGCTCATGCAGATGAATGGGTAGGGAGCAATGCCATTGCCCTTAGAGATGGTTACAAGTAGCTGGGATGGGCTTACAAGGGCAGAAGGAGCTCTTGATGAGTTCTTTCACCCTGCAGATGGGCTAGGACCGGCTGACGCAGATGATGCAGTAGGGCTGTACTGGCAGAACCCCACTCCACTGGGAGGAGAGGAGTGGTTTGGATAAATGGAGGATGCAACTGGCCTAAAGAGGCAGCTGGCCCCTCCCACCTACTGAGGGCTGAGAGGGGCTGTGGTGGTGAGCTGGACGAGCACAGCACTAAAAAGGGCTTGGCCCTGCAGCAATAACAGCTGAGAGGAATGGAGTGAGAAGCAGCGCTTGAAATGGCCTTCATTCAGCAGTGGGGCAGGGGGTGGCTGGCACAGGTGGAAGGACAGTGCCCAGGAGGCCTTCTCCCTGCAGGGGGGTTGAGAACGGTTGAGGGTGTGGAGACCAGCAGCTGGCAGCAGACATATAAAATACCTTCTCCAGGGAGGCTCAGATCATGGTTCAGGGGTGCCAGGCACCATTCCTACTCAGCCTTTCCAACGCCCACCTCCCATGCCCATAGATCTTCCCCTGCTGGTCCAAGGTCTCCATACAGGACTGCTTCTACAGTAGCCAAGGATCCCTGTTCTGTTGAAATGTATAACCTCTGGGCTGTAGCGCTGCTGCTGTTCTGTCCTGACAGGTGCCTACCCTGTAACTTTGTGAGCAAGGGAGGATGAGGGCTGGGTTGGCAGCCTCCAGGAAAGACCGAGAGCATAGGTTGGGGTCACTGGTGACCTGATCACCGCCCCCCTTTCTCCTGGTCCATTGAATCTTGGGTCTTGAGTCTATGTTTTTTTTCCTAGCACCTGAGTGATAAAAGACTGGGATTATAAGTGCTGGGATTCATAGAGGACCAGTGAAACACCTAGGCTGAACCAGGAGATGGGACAGAAGGTTGTATGAGGTTATTGTAAACAGTTTCACTTAGTGTTTTCCCTTCCCTAAGGCTAAACTGTTTCCCTGGCCCCGAATTTCATGAATCTTACAGATTAAAGGAAAAGAGTAACTTACTTGTACAACAAGCAGGGGAAAT</dnaseq>|
 }}
-[[Category:Antisense]]
+[[Category:Antisense]][[Category:NONHSAG034039]]