Difference between revisions of "NONHSAT092826"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GACTCAGCCCGCCTGCACCCAGGTGAAATAAACAGCCTTGTTGCTCACACAAAGCCTGTTTGGTGGTCTCCTCACATAGATGAGTGTGAAATTTGGTGCTGTGACTCAGATCAGGGGACCTCCCTTGGGAGATCAATCCCCTGTCCTTCTGCTCTTTGCTCCATGAGAAAGATCCACCTACGACCTCAGGTCCTCAGACTGACCAGCCCAAGGAACATCACACCAATTTTAAATAAGGTAAGCGGCCTCTTTTTACTCTCTTCTCCAACCTCTCTCACTATCCCTCAACCCCACCAGGCCAAGGAATGCCCACGTCCTGGGATTCCTCCTAAGCCATGTCCCATCTGTGTAGGACCCCACTGGAAACTGGACCATCCAACTCTCCCGGCAGCCACTTCCAGAGCCCCTGGAACTCTGGCCCAAGGCTCTCTGACTGACTCCTTCCCAGATCTTCTTGGCTTAGCACCTGAAGACTGATGCTGCTCAATCACCTTGGAAGCCTACAGGACCATCACAGACACTTTCGGTAACTCTTACAGTGGAGGGCTTATTGTAGTTTCTCAAATATTTCTTCCTCCTTTTTCTTTCTTTTCTGTTTTGGACAGGCTGGGGAGTCCTGCTTAAGACATAAATATACATTAGCCCAAAGTTTCTGTAGAGGAAAAGAAAAGAACATCGAAAGCAGAATAATATTTTGAGTAGGTAATTTCTCAGAGTTTGTTGATCCCAGTAGCCCCTGGGGAGTAATGGGATCACCTTAATAATGATAATTTAAAGTTTTCTGGCTCTTGTGTCCCCTCCTCAGAGCTTAGCTAATAATCCCTTCAATGTTTTTTTCTTATCCTACTCTCTCCCTAGAACCCAGACATACATCCATGGCAGGGCCAGACGAACTCAAGTGGCACTTGCCACACTGAACTCAGAATCACTACATGAAGCTTATCGTGCCTGGCTCCTTTTTTGACAAAGTTAAGCTCTCCCAGGAGGCTCCTCAGGTTTTTGCAAGAAGGCTTGGGTTTATTTGCTCCATCAGGTTGGCAAAAATGTTTGGATCACACTTCCACTCAAGCAACATGTCTGGATTCTCAGAGTCTCCTGATGCAAACAGGTAGGTATATCCAGATGTACGAGATGAGACTTATGGAGGCTCACTTGCCCAGAGTTTCTCAGCTGGTCACTTGCTCAGCAGAAGTTGAATTCTTGATCCAGGTCTCTGAAGCATGTGCGAGGTATTGCTCTAAAGTTTGAGTTATGAATTCAAATGTTGTCAGGGCTCAGGTGAGGAAAAGAGTAAAACTGGCTAGGTGGAGACTGAAGATTTGGAAGCAATTTTTGGCATGGAAGAACTTGAGACCAGCATTACCAGATCTTCCCATTTTTCAAGAGAAACTGAAAATATCTTCTCTTTAATGTGAAATCTCTGTATTTAAAATGCTATATATTAATTTTTTTAAATAAACAGGATTTGGGTTAGGCACAATTCTCTGGTTATATCCTCTGATCCAAACCAGGGTTCCACCACCATGATCTCAGCCATGATGTCTCTTTGGCTTCCTCCAATCTGTAAGAAAACCAATCTGGGGACTCTACCAGCGGCTAAGTATGTTTGTTCCAATTATGCAGTCTGGATTTGAAGAAATAACCACAGGATGGGTTCTGGGACCCACCAAATCCACTGTGAGACAGATTTAAGCTGAAACTACATTGATCACCTGACCTCTGTAAGCCTCTACCTGCTCTGACTGGACTGACATTATGGGTCTCCCAGAATCAATATACAGTTGACCCTTGAATAATATGAATTTGAACTACACAAATCCACCTATATGTGGATTTTTTTCAACAAATGCATTAAAAATGTTTTTGCAACAATTTGAAAAAAAC</dnaseq>| | sequence = <dnaseq>GACTCAGCCCGCCTGCACCCAGGTGAAATAAACAGCCTTGTTGCTCACACAAAGCCTGTTTGGTGGTCTCCTCACATAGATGAGTGTGAAATTTGGTGCTGTGACTCAGATCAGGGGACCTCCCTTGGGAGATCAATCCCCTGTCCTTCTGCTCTTTGCTCCATGAGAAAGATCCACCTACGACCTCAGGTCCTCAGACTGACCAGCCCAAGGAACATCACACCAATTTTAAATAAGGTAAGCGGCCTCTTTTTACTCTCTTCTCCAACCTCTCTCACTATCCCTCAACCCCACCAGGCCAAGGAATGCCCACGTCCTGGGATTCCTCCTAAGCCATGTCCCATCTGTGTAGGACCCCACTGGAAACTGGACCATCCAACTCTCCCGGCAGCCACTTCCAGAGCCCCTGGAACTCTGGCCCAAGGCTCTCTGACTGACTCCTTCCCAGATCTTCTTGGCTTAGCACCTGAAGACTGATGCTGCTCAATCACCTTGGAAGCCTACAGGACCATCACAGACACTTTCGGTAACTCTTACAGTGGAGGGCTTATTGTAGTTTCTCAAATATTTCTTCCTCCTTTTTCTTTCTTTTCTGTTTTGGACAGGCTGGGGAGTCCTGCTTAAGACATAAATATACATTAGCCCAAAGTTTCTGTAGAGGAAAAGAAAAGAACATCGAAAGCAGAATAATATTTTGAGTAGGTAATTTCTCAGAGTTTGTTGATCCCAGTAGCCCCTGGGGAGTAATGGGATCACCTTAATAATGATAATTTAAAGTTTTCTGGCTCTTGTGTCCCCTCCTCAGAGCTTAGCTAATAATCCCTTCAATGTTTTTTTCTTATCCTACTCTCTCCCTAGAACCCAGACATACATCCATGGCAGGGCCAGACGAACTCAAGTGGCACTTGCCACACTGAACTCAGAATCACTACATGAAGCTTATCGTGCCTGGCTCCTTTTTTGACAAAGTTAAGCTCTCCCAGGAGGCTCCTCAGGTTTTTGCAAGAAGGCTTGGGTTTATTTGCTCCATCAGGTTGGCAAAAATGTTTGGATCACACTTCCACTCAAGCAACATGTCTGGATTCTCAGAGTCTCCTGATGCAAACAGGTAGGTATATCCAGATGTACGAGATGAGACTTATGGAGGCTCACTTGCCCAGAGTTTCTCAGCTGGTCACTTGCTCAGCAGAAGTTGAATTCTTGATCCAGGTCTCTGAAGCATGTGCGAGGTATTGCTCTAAAGTTTGAGTTATGAATTCAAATGTTGTCAGGGCTCAGGTGAGGAAAAGAGTAAAACTGGCTAGGTGGAGACTGAAGATTTGGAAGCAATTTTTGGCATGGAAGAACTTGAGACCAGCATTACCAGATCTTCCCATTTTTCAAGAGAAACTGAAAATATCTTCTCTTTAATGTGAAATCTCTGTATTTAAAATGCTATATATTAATTTTTTTAAATAAACAGGATTTGGGTTAGGCACAATTCTCTGGTTATATCCTCTGATCCAAACCAGGGTTCCACCACCATGATCTCAGCCATGATGTCTCTTTGGCTTCCTCCAATCTGTAAGAAAACCAATCTGGGGACTCTACCAGCGGCTAAGTATGTTTGTTCCAATTATGCAGTCTGGATTTGAAGAAATAACCACAGGATGGGTTCTGGGACCCACCAAATCCACTGTGAGACAGATTTAAGCTGAAACTACATTGATCACCTGACCTCTGTAAGCCTCTACCTGCTCTGACTGGACTGACATTATGGGTCTCCCAGAATCAATATACAGTTGACCCTTGAATAATATGAATTTGAACTACACAAATCCACCTATATGTGGATTTTTTTCAACAAATGCATTAAAAATGTTTTTGCAACAATTTGAAAAAAAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG036456]] |
Revision as of 12:35, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092826 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1884 nt |
Genomic location |
chr3-:154968295..154998272 |
Exon number |
8 |
Exons |
154968295..154968615,154976408..154976471,154978151..154978412,154982819..154982947,154985187..154985578,154986405..154986575,154996156..154996410,154997983..154998272 |
Genome context |
|
Sequence |
000001 GACTCAGCCC GCCTGCACCC AGGTGAAATA AACAGCCTTG TTGCTCACAC AAAGCCTGTT TGGTGGTCTC CTCACATAGA 000080
000081 TGAGTGTGAA ATTTGGTGCT GTGACTCAGA TCAGGGGACC TCCCTTGGGA GATCAATCCC CTGTCCTTCT GCTCTTTGCT 000160 000161 CCATGAGAAA GATCCACCTA CGACCTCAGG TCCTCAGACT GACCAGCCCA AGGAACATCA CACCAATTTT AAATAAGGTA 000240 000241 AGCGGCCTCT TTTTACTCTC TTCTCCAACC TCTCTCACTA TCCCTCAACC CCACCAGGCC AAGGAATGCC CACGTCCTGG 000320 000321 GATTCCTCCT AAGCCATGTC CCATCTGTGT AGGACCCCAC TGGAAACTGG ACCATCCAAC TCTCCCGGCA GCCACTTCCA 000400 000401 GAGCCCCTGG AACTCTGGCC CAAGGCTCTC TGACTGACTC CTTCCCAGAT CTTCTTGGCT TAGCACCTGA AGACTGATGC 000480 000481 TGCTCAATCA CCTTGGAAGC CTACAGGACC ATCACAGACA CTTTCGGTAA CTCTTACAGT GGAGGGCTTA TTGTAGTTTC 000560 000561 TCAAATATTT CTTCCTCCTT TTTCTTTCTT TTCTGTTTTG GACAGGCTGG GGAGTCCTGC TTAAGACATA AATATACATT 000640 000641 AGCCCAAAGT TTCTGTAGAG GAAAAGAAAA GAACATCGAA AGCAGAATAA TATTTTGAGT AGGTAATTTC TCAGAGTTTG 000720 000721 TTGATCCCAG TAGCCCCTGG GGAGTAATGG GATCACCTTA ATAATGATAA TTTAAAGTTT TCTGGCTCTT GTGTCCCCTC 000800 000801 CTCAGAGCTT AGCTAATAAT CCCTTCAATG TTTTTTTCTT ATCCTACTCT CTCCCTAGAA CCCAGACATA CATCCATGGC 000880 000881 AGGGCCAGAC GAACTCAAGT GGCACTTGCC ACACTGAACT CAGAATCACT ACATGAAGCT TATCGTGCCT GGCTCCTTTT 000960 000961 TTGACAAAGT TAAGCTCTCC CAGGAGGCTC CTCAGGTTTT TGCAAGAAGG CTTGGGTTTA TTTGCTCCAT CAGGTTGGCA 001040 001041 AAAATGTTTG GATCACACTT CCACTCAAGC AACATGTCTG GATTCTCAGA GTCTCCTGAT GCAAACAGGT AGGTATATCC 001120 001121 AGATGTACGA GATGAGACTT ATGGAGGCTC ACTTGCCCAG AGTTTCTCAG CTGGTCACTT GCTCAGCAGA AGTTGAATTC 001200 001201 TTGATCCAGG TCTCTGAAGC ATGTGCGAGG TATTGCTCTA AAGTTTGAGT TATGAATTCA AATGTTGTCA GGGCTCAGGT 001280 001281 GAGGAAAAGA GTAAAACTGG CTAGGTGGAG ACTGAAGATT TGGAAGCAAT TTTTGGCATG GAAGAACTTG AGACCAGCAT 001360 001361 TACCAGATCT TCCCATTTTT CAAGAGAAAC TGAAAATATC TTCTCTTTAA TGTGAAATCT CTGTATTTAA AATGCTATAT 001440 001441 ATTAATTTTT TTAAATAAAC AGGATTTGGG TTAGGCACAA TTCTCTGGTT ATATCCTCTG ATCCAAACCA GGGTTCCACC 001520 001521 ACCATGATCT CAGCCATGAT GTCTCTTTGG CTTCCTCCAA TCTGTAAGAA AACCAATCTG GGGACTCTAC CAGCGGCTAA 001600 001601 GTATGTTTGT TCCAATTATG CAGTCTGGAT TTGAAGAAAT AACCACAGGA TGGGTTCTGG GACCCACCAA ATCCACTGTG 001680 001681 AGACAGATTT AAGCTGAAAC TACATTGATC ACCTGACCTC TGTAAGCCTC TACCTGCTCT GACTGGACTG ACATTATGGG 001760 001761 TCTCCCAGAA TCAATATACA GTTGACCCTT GAATAATATG AATTTGAACT ACACAAATCC ACCTATATGT GGATTTTTTT 001840 001841 CAACAAATGC ATTAAAAATG TTTTTGCAAC AATTTGAAAA AAAC |
Predicted Small Protein
Name | NONHSAT092826_smProtein_932:1111 |
Length | 60 |
Molecular weight | 6606.5941 |
Aromaticity | 0.118644067797 |
Instability index | 56.1694915254 |
Isoelectric point | 10.020324707 |
Runs | 8 |
Runs residual | 0.00886331830197 |
Runs probability | 0.0406951068715 |
Amino acid sequence | MKLIVPGSFFDKVKLSQEAPQVFARRLGFICSIRLAKMFGSHFHSSNMSGFSESPDANR |
Secondary structure | LEEEELLLLLLLLLLLLLHHHHHHHHHLLEEHHHHHHHHLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |