Difference between revisions of "NONHSAT094090"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AAAATGAATGGGTGTGGAGTCGTACACCTAGAAACAGACTTGTGTTCCTCTATACGATTCTAACTAAATGAGTAGAACATACCTGGGTATGTCATGGCTACTTTAGATCTATGAGGCAGGAAGTTAGAATTTAAGGAATCTAAGAAATGCAGGGACTTGAAAGATTATTGCAAAATAAAGCCTTTAAAAAGTATCGTTCTCCCAAAGTGTAGGCCATAAAATGATTCTCTAGAGGGAACTATGCCAATACCATATCTGTTAACATCTTAGACCCACAGGGTCATATTGGAACCTTTGCTAGAGTCTGAGGATCCTGATTAAGAGGAAGAGGAAGGGTTGATCTGAAGAACATAGTGCTGTGGTGGAGGTTGTGTAGAGTTCCATGAGGTCACTAAGGGACCTGGGAACACAGGATATTGGGAGAGCTGGGAAAGGGGAATAGGGATGAGATGCGGGAGCATGCCAAAGACAAAATTACTTTGTTGTCAAATTTTGCCCACAAAAAGAAGAGGGATTCCACCCCTCCTTCACCCAGTCTTGCCCTGTCTCCTTTATTCAGCTGCACTGCTGGATGCTTGCCTGGTTCCCAGCCTTTAAGGTTTTTAGTCTATAAGTTCAACGTTGTTGGAAAAGTGCTCTGATACCTGCAGAGGTGGGAGAAAGGTGGGGGCAGTCCTCTGCTAGGAGATGGAAGGGACAATCAAAGCTTAGTAGCTTGAGCTGGTCCTGGAAGAGCAAGTAGGAGCTCTTTAGCCAGACTAAGAGAAGGGCATTCTTGGCAGAAGGAATATTCTATATAAAGAAGTGGAGTCAGGGAACAGTAGGGCTCTTTGAAGAACTACAGATTGTGTTCTAAATGAATGACATGTAAGGTTTGTAAGGGGCGAGTGATAACCACTGATGAATGGCAGATGGTGTTGACAACTAGGCGGGGCCAGAGTCTGTAGGATCTTACATGTCTTGCAATCAGTTTTGACTTTGACCTTGGAACCCAGTTGAGGCTCCCTTCCGCCCCAGTTCCTCATGGCAGGGAAATACATCATGTTGTGCGTTGTAAGACTTCAAAACTTTGCTAGTGAGAGGCCTGCTTAATATTATTTAATCTAGTTCAATTTAATTGTTTTGAAAAAAAAAAAAAAGAAGACTTGGAGGTATAACCTCTGGAAAATTTTCTTCCACTCTTCTTTTTTTCTTCTCTACTCTTCCCTATTCCTATATTATTCCCTAGCATCCCCTTTTTCTCATCCTAGCTTTTCCTCTCCACCGTGCTGCGCTATTTCAGTATCTTTCTATGCAGAACGTTACTTTTTGTTGTATTATGCAACTACAGTGTAATCTTTTTGAATACTTTAATTAGTAATTTAAACTCAACATAGTCTTAGCAACAGTGCACGTTACTTAGCTGGCATGACCATAGTCTGAGCGGTGTGGCCAGTGTGAAGCATGAGTGTGCAGTGAGCACCGCATCACAGCAGCCACTTGCCGGCAGCAGCTGTAAGGTTGTATCTAAGCAGTGTCTTGATTTTAGCTATGGTAAAATGAGAATTCATGAATGTTTAAATTTCAGAGACCATCTTTAATTTGATGACTGAAATGTCAGCAGTTATTTGAGATTTTTATTAATAGCATTACAGTTTCAAATGAATAGTCAGAGTTAATGTCGTCATTGGGCACTGCGAAAAGGAGACTGAAGAACTGACAGCCATTCCTCAGATGGCGTCGAGGTGCAGGGTTGACTCTGGATGTTGTAATCAGAAAGAGTGTTGGTTGCCTGCAGCAATCAGCTGGTTGCCTGCAGAAGTGAGCCTCTTCTGGTCAGGGGGCATACTTTTTT</dnaseq>| | sequence = <dnaseq>AAAATGAATGGGTGTGGAGTCGTACACCTAGAAACAGACTTGTGTTCCTCTATACGATTCTAACTAAATGAGTAGAACATACCTGGGTATGTCATGGCTACTTTAGATCTATGAGGCAGGAAGTTAGAATTTAAGGAATCTAAGAAATGCAGGGACTTGAAAGATTATTGCAAAATAAAGCCTTTAAAAAGTATCGTTCTCCCAAAGTGTAGGCCATAAAATGATTCTCTAGAGGGAACTATGCCAATACCATATCTGTTAACATCTTAGACCCACAGGGTCATATTGGAACCTTTGCTAGAGTCTGAGGATCCTGATTAAGAGGAAGAGGAAGGGTTGATCTGAAGAACATAGTGCTGTGGTGGAGGTTGTGTAGAGTTCCATGAGGTCACTAAGGGACCTGGGAACACAGGATATTGGGAGAGCTGGGAAAGGGGAATAGGGATGAGATGCGGGAGCATGCCAAAGACAAAATTACTTTGTTGTCAAATTTTGCCCACAAAAAGAAGAGGGATTCCACCCCTCCTTCACCCAGTCTTGCCCTGTCTCCTTTATTCAGCTGCACTGCTGGATGCTTGCCTGGTTCCCAGCCTTTAAGGTTTTTAGTCTATAAGTTCAACGTTGTTGGAAAAGTGCTCTGATACCTGCAGAGGTGGGAGAAAGGTGGGGGCAGTCCTCTGCTAGGAGATGGAAGGGACAATCAAAGCTTAGTAGCTTGAGCTGGTCCTGGAAGAGCAAGTAGGAGCTCTTTAGCCAGACTAAGAGAAGGGCATTCTTGGCAGAAGGAATATTCTATATAAAGAAGTGGAGTCAGGGAACAGTAGGGCTCTTTGAAGAACTACAGATTGTGTTCTAAATGAATGACATGTAAGGTTTGTAAGGGGCGAGTGATAACCACTGATGAATGGCAGATGGTGTTGACAACTAGGCGGGGCCAGAGTCTGTAGGATCTTACATGTCTTGCAATCAGTTTTGACTTTGACCTTGGAACCCAGTTGAGGCTCCCTTCCGCCCCAGTTCCTCATGGCAGGGAAATACATCATGTTGTGCGTTGTAAGACTTCAAAACTTTGCTAGTGAGAGGCCTGCTTAATATTATTTAATCTAGTTCAATTTAATTGTTTTGAAAAAAAAAAAAAAGAAGACTTGGAGGTATAACCTCTGGAAAATTTTCTTCCACTCTTCTTTTTTTCTTCTCTACTCTTCCCTATTCCTATATTATTCCCTAGCATCCCCTTTTTCTCATCCTAGCTTTTCCTCTCCACCGTGCTGCGCTATTTCAGTATCTTTCTATGCAGAACGTTACTTTTTGTTGTATTATGCAACTACAGTGTAATCTTTTTGAATACTTTAATTAGTAATTTAAACTCAACATAGTCTTAGCAACAGTGCACGTTACTTAGCTGGCATGACCATAGTCTGAGCGGTGTGGCCAGTGTGAAGCATGAGTGTGCAGTGAGCACCGCATCACAGCAGCCACTTGCCGGCAGCAGCTGTAAGGTTGTATCTAAGCAGTGTCTTGATTTTAGCTATGGTAAAATGAGAATTCATGAATGTTTAAATTTCAGAGACCATCTTTAATTTGATGACTGAAATGTCAGCAGTTATTTGAGATTTTTATTAATAGCATTACAGTTTCAAATGAATAGTCAGAGTTAATGTCGTCATTGGGCACTGCGAAAAGGAGACTGAAGAACTGACAGCCATTCCTCAGATGGCGTCGAGGTGCAGGGTTGACTCTGGATGTTGTAATCAGAAAGAGTGTTGGTTGCCTGCAGCAATCAGCTGGTTGCCTGCAGAAGTGAGCCTCTTCTGGTCAGGGGGCATACTTTTTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG037030]] |
Revision as of 13:05, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT094090 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1834 nt |
Genomic location |
chr3-:194192715..194206447 |
Exon number |
6 |
Exons |
194192715..194192899,194195382..194195891,194197496..194198325,194202685..194202780,194203450..194203464,194206250..194206447 |
Genome context |
|
Sequence |
000001 AAAATGAATG GGTGTGGAGT CGTACACCTA GAAACAGACT TGTGTTCCTC TATACGATTC TAACTAAATG AGTAGAACAT 000080
000081 ACCTGGGTAT GTCATGGCTA CTTTAGATCT ATGAGGCAGG AAGTTAGAAT TTAAGGAATC TAAGAAATGC AGGGACTTGA 000160 000161 AAGATTATTG CAAAATAAAG CCTTTAAAAA GTATCGTTCT CCCAAAGTGT AGGCCATAAA ATGATTCTCT AGAGGGAACT 000240 000241 ATGCCAATAC CATATCTGTT AACATCTTAG ACCCACAGGG TCATATTGGA ACCTTTGCTA GAGTCTGAGG ATCCTGATTA 000320 000321 AGAGGAAGAG GAAGGGTTGA TCTGAAGAAC ATAGTGCTGT GGTGGAGGTT GTGTAGAGTT CCATGAGGTC ACTAAGGGAC 000400 000401 CTGGGAACAC AGGATATTGG GAGAGCTGGG AAAGGGGAAT AGGGATGAGA TGCGGGAGCA TGCCAAAGAC AAAATTACTT 000480 000481 TGTTGTCAAA TTTTGCCCAC AAAAAGAAGA GGGATTCCAC CCCTCCTTCA CCCAGTCTTG CCCTGTCTCC TTTATTCAGC 000560 000561 TGCACTGCTG GATGCTTGCC TGGTTCCCAG CCTTTAAGGT TTTTAGTCTA TAAGTTCAAC GTTGTTGGAA AAGTGCTCTG 000640 000641 ATACCTGCAG AGGTGGGAGA AAGGTGGGGG CAGTCCTCTG CTAGGAGATG GAAGGGACAA TCAAAGCTTA GTAGCTTGAG 000720 000721 CTGGTCCTGG AAGAGCAAGT AGGAGCTCTT TAGCCAGACT AAGAGAAGGG CATTCTTGGC AGAAGGAATA TTCTATATAA 000800 000801 AGAAGTGGAG TCAGGGAACA GTAGGGCTCT TTGAAGAACT ACAGATTGTG TTCTAAATGA ATGACATGTA AGGTTTGTAA 000880 000881 GGGGCGAGTG ATAACCACTG ATGAATGGCA GATGGTGTTG ACAACTAGGC GGGGCCAGAG TCTGTAGGAT CTTACATGTC 000960 000961 TTGCAATCAG TTTTGACTTT GACCTTGGAA CCCAGTTGAG GCTCCCTTCC GCCCCAGTTC CTCATGGCAG GGAAATACAT 001040 001041 CATGTTGTGC GTTGTAAGAC TTCAAAACTT TGCTAGTGAG AGGCCTGCTT AATATTATTT AATCTAGTTC AATTTAATTG 001120 001121 TTTTGAAAAA AAAAAAAAAG AAGACTTGGA GGTATAACCT CTGGAAAATT TTCTTCCACT CTTCTTTTTT TCTTCTCTAC 001200 001201 TCTTCCCTAT TCCTATATTA TTCCCTAGCA TCCCCTTTTT CTCATCCTAG CTTTTCCTCT CCACCGTGCT GCGCTATTTC 001280 001281 AGTATCTTTC TATGCAGAAC GTTACTTTTT GTTGTATTAT GCAACTACAG TGTAATCTTT TTGAATACTT TAATTAGTAA 001360 001361 TTTAAACTCA ACATAGTCTT AGCAACAGTG CACGTTACTT AGCTGGCATG ACCATAGTCT GAGCGGTGTG GCCAGTGTGA 001440 001441 AGCATGAGTG TGCAGTGAGC ACCGCATCAC AGCAGCCACT TGCCGGCAGC AGCTGTAAGG TTGTATCTAA GCAGTGTCTT 001520 001521 GATTTTAGCT ATGGTAAAAT GAGAATTCAT GAATGTTTAA ATTTCAGAGA CCATCTTTAA TTTGATGACT GAAATGTCAG 001600 001601 CAGTTATTTG AGATTTTTAT TAATAGCATT ACAGTTTCAA ATGAATAGTC AGAGTTAATG TCGTCATTGG GCACTGCGAA 001680 001681 AAGGAGACTG AAGAACTGAC AGCCATTCCT CAGATGGCGT CGAGGTGCAG GGTTGACTCT GGATGTTGTA ATCAGAAAGA 001760 001761 GTGTTGGTTG CCTGCAGCAA TCAGCTGGTT GCCTGCAGAA GTGAGCCTCT TCTGGTCAGG GGGCATACTT TTTT |
Predicted Small Protein
Name | NONHSAT094090_smProtein_449:640 |
Length | 64 |
Molecular weight | 6942.14 |
Aromaticity | 0.0793650793651 |
Instability index | 56.5253968254 |
Isoelectric point | 10.0303344727 |
Runs | 8 |
Runs residual | 0.0179786200194 |
Runs probability | 0.032315403639 |
Amino acid sequence | MREHAKDKITLLSNFAHKKKRDSTPPSPSLALSPLFSCTAGCLPGSQPLRFLVYKFNVVG KVL |
Secondary structure | LLLHHHHHEEEEELHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEEE EEL |
PRMN | - |
PiMo | - |