Difference between revisions of "NONHSAT097678"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>ATAGTCTGAGAAGCTCTCAACATACACGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAATGGCGATCAGTCTTTTCCTTCAGCTCAGCAAACTTGCATGCAATGTGAGCCGTGTGGCAATCCAATACAGGGGCATAGCCAGCACTTATTTGGCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTCTTGACATTGAAGCCCACATTGTCCCCAGGAAGAACTTCACTCAAAGCTTCATGGTGCATTTCAACAGATTTTACTTCTGTTGCAACGTTGACTGGAGCAAAGGTGACCACCATACCAGGTTTGAGAACACCAGTCTCCACTCAGCCAACAGGAACAGTACCAATACCACCAATTTTGTAGACATCCTGGAGAGGCAGGCACAAGGGCTTGTCAGTTGGACGAGTTGGTGGTAGGATGCAGTCAAGAGCCTCAAGCAGCGTGGTTCCACTGGCATTGCCATCCTTACGGGTGACTTTCCATCCCTTGAACCAAGGCATGTTAGCACTTGGCTCCAGCGTGTTGTCACCATTCCAACCAGAAACTGGCACAAATGCTACTGTGTCGGTGTTGTGGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTATGGCTGTAGGGTGGCTCAGTGGAATCCATTTTGTTAACACCAACAATTAGTTGTTTCACACCCAGTGTGTAAGCCAGAAGGGCGTGCTCTCGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCACCAAAACCAGCAGCAACAATCAAGACAGCACAGTCAGCCTGAGATGTCCCTGTAATCATGTTTTTGATGAGGTCTCTGTGTCCTGGGGCATCAATGATAGTCACATAGTACTTGCTGGTCTCAAATTTCCACAAAGAGATATCAATGGTGATACCATGTTCACGCTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCACTTTCCCATCTCAGCAGCCTCCTTCTCAAATTTTTCGATGGTTCTTTTGTCGACGCCACCGCATTTGTAGATCAGAT</dnaseq>| | sequence = <dnaseq>ATAGTCTGAGAAGCTCTCAACATACACGGGCTTGCCAGGAACCATATCAACAATGGCAGCATCACCAGACTTCAAGAATTTAGGGCCATCTTCCAGCTTTTTACCAGAATGGCGATCAGTCTTTTCCTTCAGCTCAGCAAACTTGCATGCAATGTGAGCCGTGTGGCAATCCAATACAGGGGCATAGCCAGCACTTATTTGGCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTCTTGACATTGAAGCCCACATTGTCCCCAGGAAGAACTTCACTCAAAGCTTCATGGTGCATTTCAACAGATTTTACTTCTGTTGCAACGTTGACTGGAGCAAAGGTGACCACCATACCAGGTTTGAGAACACCAGTCTCCACTCAGCCAACAGGAACAGTACCAATACCACCAATTTTGTAGACATCCTGGAGAGGCAGGCACAAGGGCTTGTCAGTTGGACGAGTTGGTGGTAGGATGCAGTCAAGAGCCTCAAGCAGCGTGGTTCCACTGGCATTGCCATCCTTACGGGTGACTTTCCATCCCTTGAACCAAGGCATGTTAGCACTTGGCTCCAGCGTGTTGTCACCATTCCAACCAGAAACTGGCACAAATGCTACTGTGTCGGTGTTGTGGCCAATTTTCTTAATGTAAGTGCTGACTTCCTTAACAATTTCCTCATATCTCTTATGGCTGTAGGGTGGCTCAGTGGAATCCATTTTGTTAACACCAACAATTAGTTGTTTCACACCCAGTGTGTAAGCCAGAAGGGCGTGCTCTCGGGTCTGCCCATTCTTGGAGATACCAGCTTCAAATTCACCAAAACCAGCAGCAACAATCAAGACAGCACAGTCAGCCTGAGATGTCCCTGTAATCATGTTTTTGATGAGGTCTCTGTGTCCTGGGGCATCAATGATAGTCACATAGTACTTGCTGGTCTCAAATTTCCACAAAGAGATATCAATGGTGATACCATGTTCACGCTCAGCTTTCAGTTTATCCAAGACCCAGGCATACTTGAAGGAGCACTTTCCCATCTCAGCAGCCTCCTTCTCAAATTTTTCGATGGTTCTTTTGTCGACGCCACCGCATTTGTAGATCAGAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG038568]] |
Revision as of 06:15, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT097678 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1116 nt |
| Genomic location |
chr4-:106405925..106407102 |
| Exon number |
2 |
| Exons |
106405925..106406790,106406853..106407102 |
| Genome context |
|
| Sequence |
000001 ATAGTCTGAG AAGCTCTCAA CATACACGGG CTTGCCAGGA ACCATATCAA CAATGGCAGC ATCACCAGAC TTCAAGAATT 000080
000081 TAGGGCCATC TTCCAGCTTT TTACCAGAAT GGCGATCAGT CTTTTCCTTC AGCTCAGCAA ACTTGCATGC AATGTGAGCC 000160 000161 GTGTGGCAAT CCAATACAGG GGCATAGCCA GCACTTATTT GGCCTGGATG GTTCAGGATA ATCACCTGAG CAGTGAAGCC 000240 000241 AGCTGCTTCC ATTCTTGACA TTGAAGCCCA CATTGTCCCC AGGAAGAACT TCACTCAAAG CTTCATGGTG CATTTCAACA 000320 000321 GATTTTACTT CTGTTGCAAC GTTGACTGGA GCAAAGGTGA CCACCATACC AGGTTTGAGA ACACCAGTCT CCACTCAGCC 000400 000401 AACAGGAACA GTACCAATAC CACCAATTTT GTAGACATCC TGGAGAGGCA GGCACAAGGG CTTGTCAGTT GGACGAGTTG 000480 000481 GTGGTAGGAT GCAGTCAAGA GCCTCAAGCA GCGTGGTTCC ACTGGCATTG CCATCCTTAC GGGTGACTTT CCATCCCTTG 000560 000561 AACCAAGGCA TGTTAGCACT TGGCTCCAGC GTGTTGTCAC CATTCCAACC AGAAACTGGC ACAAATGCTA CTGTGTCGGT 000640 000641 GTTGTGGCCA ATTTTCTTAA TGTAAGTGCT GACTTCCTTA ACAATTTCCT CATATCTCTT ATGGCTGTAG GGTGGCTCAG 000720 000721 TGGAATCCAT TTTGTTAACA CCAACAATTA GTTGTTTCAC ACCCAGTGTG TAAGCCAGAA GGGCGTGCTC TCGGGTCTGC 000800 000801 CCATTCTTGG AGATACCAGC TTCAAATTCA CCAAAACCAG CAGCAACAAT CAAGACAGCA CAGTCAGCCT GAGATGTCCC 000880 000881 TGTAATCATG TTTTTGATGA GGTCTCTGTG TCCTGGGGCA TCAATGATAG TCACATAGTA CTTGCTGGTC TCAAATTTCC 000960 000961 ACAAAGAGAT ATCAATGGTG ATACCATGTT CACGCTCAGC TTTCAGTTTA TCCAAGACCC AGGCATACTT GAAGGAGCAC 001040 001041 TTTCCCATCT CAGCAGCCTC CTTCTCAAAT TTTTCGATGG TTCTTTTGTC GACGCCACCG CATTTGTAGA TCAGAT |
Predicted Small Protein
| Name | NONHSAT097678_smProtein_488:664 |
| Length | 59 |
| Molecular weight | 6183.1821 |
| Aromaticity | 0.0689655172414 |
| Instability index | 57.3137931034 |
| Isoelectric point | 9.36956787109 |
| Runs | 8 |
| Runs residual | 0.0186623721106 |
| Runs probability | 0.0307034976152 |
| Amino acid sequence | MQSRASSSVVPLALPSLRVTFHPLNQGMLALGSSVLSPFQPETGTNATVSVLWPIFLM |
| Secondary structure | LLLLLLLLLLLLLLLLLEEEELLLLHHHHEELLLLLLLLLLLLLLLLEEEEEEEEELL |
| PRMN | - |
| PiMo | - |
