Difference between revisions of "NONHSAT112171"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AAAGCAAGCCTACAAAAGGGAGTAGTCGGTTTCGAGCCTGACGGTGGAGCTGACGCGGGAATGAGAGAGAACCTGAGAAGACCGCCAGGGCGCCCTCCCTGCGGAggcgagtccctcaccgcccctctacatcgtccttttcaataaggagctcttaatacctgcaactgcttccttcaaggggtggctggaagatcaGTAGGCAAGGCCTGCGGACTGCGCACCTTAAAGCGCTTCGGGACCGTAAGACAGTGAGTGCTGAGCGCGCGGCCGGGAAGAAGCCTGGAGGCTCTGAGCTCGGAGGACAGAGACCGAAGCCCCAGGGCCTGCGTCCCTCACAACCTGCGCCTCCTGTCCTCCCGCGCTACTCCCGAAGCGCACCTTCTCGCCCGCAGGCCGCAGAAGTGATGACGCAAAGCCCTCGGGGCCTCCGCCACCTCCTCACGCTTCTGCTGGACCGAATCCTTGGAATGGACAGATTTGTGACCCAGAAGGAAATCTCTGACCTCAGCTGTGGCTCTTGGTGCTGGCCAGAAGCCAACTTCATGTCTGAGTGCACGAGCAGCAGTTTGCCATGGAGAGCTTGGGGCTGCACACGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAGGTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGAGGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAGAGAAGGCTATGACCCCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTCACCACCCTGTGGCTGTGCCATCGGAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCAGCAGAGGATGATGAGGGCTTCAGTGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCAAGGTGAGCACGCACAGCGTGACACGGTCTGTCACTCTAGACAACCGGGCCTGGCCTGCGCACTGCCTCTTGGCCCTGCCAGAACTTCACCTCTCAAGAGGACAAGGGCAGCCCTGTGCTTGGGCACCATGTGGGATATTCCCTTTGCCCCTCCACCCCAGCTCCCCCAACTCACCTGTCACACATCATTGTCTAGGGCATGCAACACAGCCTGGCCTGGCCGCTGACAGCTGTTTACGCTCACTTTTGTTTACGCTGTCTTTGCAGAGGGAAAGCTGCCATAAGAAACAGTGGCATCCTTATGCTGAGGAGTTAGGCCCAGCTTCACTTTGGCTGCTGTAGTAATCCTCTGCACTAGCTGGGAAAGCCCTGCCAGTGACTTGTATTAGCTTTCTAGTCCACTGAGGTAATTGTATTTATTTCTTCTCTGTGACTCAGTCATTTGGAAAATTAACCTCAGTGGGCTATGACAA</dnaseq>| | sequence = <dnaseq>AAAGCAAGCCTACAAAAGGGAGTAGTCGGTTTCGAGCCTGACGGTGGAGCTGACGCGGGAATGAGAGAGAACCTGAGAAGACCGCCAGGGCGCCCTCCCTGCGGAggcgagtccctcaccgcccctctacatcgtccttttcaataaggagctcttaatacctgcaactgcttccttcaaggggtggctggaagatcaGTAGGCAAGGCCTGCGGACTGCGCACCTTAAAGCGCTTCGGGACCGTAAGACAGTGAGTGCTGAGCGCGCGGCCGGGAAGAAGCCTGGAGGCTCTGAGCTCGGAGGACAGAGACCGAAGCCCCAGGGCCTGCGTCCCTCACAACCTGCGCCTCCTGTCCTCCCGCGCTACTCCCGAAGCGCACCTTCTCGCCCGCAGGCCGCAGAAGTGATGACGCAAAGCCCTCGGGGCCTCCGCCACCTCCTCACGCTTCTGCTGGACCGAATCCTTGGAATGGACAGATTTGTGACCCAGAAGGAAATCTCTGACCTCAGCTGTGGCTCTTGGTGCTGGCCAGAAGCCAACTTCATGTCTGAGTGCACGAGCAGCAGTTTGCCATGGAGAGCTTGGGGCTGCACACGGTGACCCTTAGTGATGGGACAACAGCCTACGTCCAGCAAGCTGTCAAAGGAGAGAAGCTTCTTGAAGGGCAGGTGATCCAGCTCGAGGATGGGACCACCGCATACATTCACCAGGTGACGGTACAGAAAGAAGCTCTCTCCTTTGAGGATGGTCAGCCTGTGCAGCTGGAAGATGGCAGCATGGCTTACATACACCGCACACCCAGAGAAGGCTATGACCCCAGCACCCTGGAAGCCGTCCAACTGGAAGATGGCTCCACTGCCTACATTCACCACCCTGTGGCTGTGCCATCGGAGAGCACCATCCTGGCCGTACAGACAGAGGTGGGCTTGGAGGACCTGGCAGCAGAGGATGATGAGGGCTTCAGTGCAGACGCAGTGGTGGCCCTGGAGCAGTATGCCAGCAAGGTGAGCACGCACAGCGTGACACGGTCTGTCACTCTAGACAACCGGGCCTGGCCTGCGCACTGCCTCTTGGCCCTGCCAGAACTTCACCTCTCAAGAGGACAAGGGCAGCCCTGTGCTTGGGCACCATGTGGGATATTCCCTTTGCCCCTCCACCCCAGCTCCCCCAACTCACCTGTCACACATCATTGTCTAGGGCATGCAACACAGCCTGGCCTGGCCGCTGACAGCTGTTTACGCTCACTTTTGTTTACGCTGTCTTTGCAGAGGGAAAGCTGCCATAAGAAACAGTGGCATCCTTATGCTGAGGAGTTAGGCCCAGCTTCACTTTGGCTGCTGTAGTAATCCTCTGCACTAGCTGGGAAAGCCCTGCCAGTGACTTGTATTAGCTTTCTAGTCCACTGAGGTAATTGTATTTATTTCTTCTCTGTGACTCAGTCATTTGGAAAATTAACCTCAGTGGGCTATGACAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG043648]] |
Revision as of 11:24, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112171 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1476 nt |
Genomic location |
chr6+:35226686..35256092 |
Exon number |
5 |
Exons |
35226686..35227163,35248833..35249001,35253905..35253985,35254099..35254176,35255423..35256092 |
Genome context |
|
Sequence |
000001 AAAGCAAGCC TACAAAAGGG AGTAGTCGGT TTCGAGCCTG ACGGTGGAGC TGACGCGGGA ATGAGAGAGA ACCTGAGAAG 000080
000081 ACCGCCAGGG CGCCCTCCCT GCGGAggcga gtccctcacc gcccctctac atcgtccttt tcaataagga gctcttaata 000160 000161 cctgcaactg cttccttcaa ggggtggctg gaagatcaGT AGGCAAGGCC TGCGGACTGC GCACCTTAAA GCGCTTCGGG 000240 000241 ACCGTAAGAC AGTGAGTGCT GAGCGCGCGG CCGGGAAGAA GCCTGGAGGC TCTGAGCTCG GAGGACAGAG ACCGAAGCCC 000320 000321 CAGGGCCTGC GTCCCTCACA ACCTGCGCCT CCTGTCCTCC CGCGCTACTC CCGAAGCGCA CCTTCTCGCC CGCAGGCCGC 000400 000401 AGAAGTGATG ACGCAAAGCC CTCGGGGCCT CCGCCACCTC CTCACGCTTC TGCTGGACCG AATCCTTGGA ATGGACAGAT 000480 000481 TTGTGACCCA GAAGGAAATC TCTGACCTCA GCTGTGGCTC TTGGTGCTGG CCAGAAGCCA ACTTCATGTC TGAGTGCACG 000560 000561 AGCAGCAGTT TGCCATGGAG AGCTTGGGGC TGCACACGGT GACCCTTAGT GATGGGACAA CAGCCTACGT CCAGCAAGCT 000640 000641 GTCAAAGGAG AGAAGCTTCT TGAAGGGCAG GTGATCCAGC TCGAGGATGG GACCACCGCA TACATTCACC AGGTGACGGT 000720 000721 ACAGAAAGAA GCTCTCTCCT TTGAGGATGG TCAGCCTGTG CAGCTGGAAG ATGGCAGCAT GGCTTACATA CACCGCACAC 000800 000801 CCAGAGAAGG CTATGACCCC AGCACCCTGG AAGCCGTCCA ACTGGAAGAT GGCTCCACTG CCTACATTCA CCACCCTGTG 000880 000881 GCTGTGCCAT CGGAGAGCAC CATCCTGGCC GTACAGACAG AGGTGGGCTT GGAGGACCTG GCAGCAGAGG ATGATGAGGG 000960 000961 CTTCAGTGCA GACGCAGTGG TGGCCCTGGA GCAGTATGCC AGCAAGGTGA GCACGCACAG CGTGACACGG TCTGTCACTC 001040 001041 TAGACAACCG GGCCTGGCCT GCGCACTGCC TCTTGGCCCT GCCAGAACTT CACCTCTCAA GAGGACAAGG GCAGCCCTGT 001120 001121 GCTTGGGCAC CATGTGGGAT ATTCCCTTTG CCCCTCCACC CCAGCTCCCC CAACTCACCT GTCACACATC ATTGTCTAGG 001200 001201 GCATGCAACA CAGCCTGGCC TGGCCGCTGA CAGCTGTTTA CGCTCACTTT TGTTTACGCT GTCTTTGCAG AGGGAAAGCT 001280 001281 GCCATAAGAA ACAGTGGCAT CCTTATGCTG AGGAGTTAGG CCCAGCTTCA CTTTGGCTGC TGTAGTAATC CTCTGCACTA 001360 001361 GCTGGGAAAG CCCTGCCAGT GACTTGTATT AGCTTTCTAG TCCACTGAGG TAATTGTATT TATTTCTTCT CTGTGACTCA 001440 001441 GTCATTTGGA AAATTAACCT CAGTGGGCTA TGACAA |
Predicted Small Protein
Name | NONHSAT112171_smProtein_746:1009 |
Length | 88 |
Molecular weight | 10635.3814 |
Aromaticity | 0.172413793103 |
Instability index | 62.7103448276 |
Isoelectric point | 11.5689086914 |
Runs | 9 |
Runs residual | 0.0348111658456 |
Runs probability | 0.037714184773 |
Amino acid sequence | MVSLCSWKMAAWLTYTAHPEKAMTPAPWKPSNWKMAPLPTFTTLWLCHRRAPSWPYRQRW AWRTWQQRMMRASVQTQWWPWSSMPAR |
Secondary structure | LLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLLHHHHH HHHHHHHHHHHHHHHLLEELLLLLLLL |
PRMN | - |
PiMo | - |