Difference between revisions of "NONHSAT112717"

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sequence = <dnaseq>TCTCTTTATAAATAGAGCTATGAAGAGATTTAAAGGATGTTAGGCTGCTTTGAAGGTGTAAGACCCCTTCCTTTCCTACCCATCCTCCTCACTCCCTAGCTGGTCCCAGTGGCTCTCTCTCTCGGCAGATTTGGTCTGTGTGTCCATGTACTGGAGAGTCAGTGGGCGCTCATTTCTCAGAGTTATGATGTCCTTGGCCTGGCCTGCTTTTACTCTGCTTGCTTAGATCTGCTGCTCTATGGAAAAGGTAAATCTTGCGCAGGTCTCTGCTGTACTCCTGAGGGATTCAGACCTCAGATGGGGCTCTAGGTTTGGAATACAGGCAGTCATGAACCTGTCCCTCAGGCATGGCCTCTGCCCCTGACCTCTGGCTCCTTAAAGTCTGGGAACCATGTTGTGATTCAGGGGTGTCTGCCTTTGGGGTCTTTTTTCCTTCCCTGTATCACATACCTTCTATACCCTGGTTCCTACACTGATATTATATACTAGCGTGGTTACCTTCTCTGTCCACAGGATTGCTGTGTCGGCCCTTTAGTGAGTGTCTGCGTTTCGTTCAAGTCTACGAGCACAGCCGTGTTCTAACCTCTCAGAGCAATGTCATGCTGGGGGTCCACTCCTCCCTGGCCATGTGTACTGTAAGGAGTTCTTCTCTCAATGTGTGACCTGCCCTGTCTATCACCAGTGGGTATCTGAGCTTAAGGCCTCTGTAATGAGATGTGAAAAGAGAGAATTGATGTCCCTGACTAACAGCATCAGACCTTTT</dnaseq>|
 
sequence = <dnaseq>TCTCTTTATAAATAGAGCTATGAAGAGATTTAAAGGATGTTAGGCTGCTTTGAAGGTGTAAGACCCCTTCCTTTCCTACCCATCCTCCTCACTCCCTAGCTGGTCCCAGTGGCTCTCTCTCTCGGCAGATTTGGTCTGTGTGTCCATGTACTGGAGAGTCAGTGGGCGCTCATTTCTCAGAGTTATGATGTCCTTGGCCTGGCCTGCTTTTACTCTGCTTGCTTAGATCTGCTGCTCTATGGAAAAGGTAAATCTTGCGCAGGTCTCTGCTGTACTCCTGAGGGATTCAGACCTCAGATGGGGCTCTAGGTTTGGAATACAGGCAGTCATGAACCTGTCCCTCAGGCATGGCCTCTGCCCCTGACCTCTGGCTCCTTAAAGTCTGGGAACCATGTTGTGATTCAGGGGTGTCTGCCTTTGGGGTCTTTTTTCCTTCCCTGTATCACATACCTTCTATACCCTGGTTCCTACACTGATATTATATACTAGCGTGGTTACCTTCTCTGTCCACAGGATTGCTGTGTCGGCCCTTTAGTGAGTGTCTGCGTTTCGTTCAAGTCTACGAGCACAGCCGTGTTCTAACCTCTCAGAGCAATGTCATGCTGGGGGTCCACTCCTCCCTGGCCATGTGTACTGTAAGGAGTTCTTCTCTCAATGTGTGACCTGCCCTGTCTATCACCAGTGGGTATCTGAGCTTAAGGCCTCTGTAATGAGATGTGAAAAGAGAGAATTGATGTCCCTGACTAACAGCATCAGACCTTTT</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG043757]]

Revision as of 11:28, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT112717

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

763 nt

Genomic location

chr6+:41105834..41107725

Exon number

2

Exons

41105834..41106464,41107594..41107725

Genome context

Sequence
000001 TCTCTTTATA AATAGAGCTA TGAAGAGATT TAAAGGATGT TAGGCTGCTT TGAAGGTGTA AGACCCCTTC CTTTCCTACC 000080
000081 CATCCTCCTC ACTCCCTAGC TGGTCCCAGT GGCTCTCTCT CTCGGCAGAT TTGGTCTGTG TGTCCATGTA CTGGAGAGTC 000160
000161 AGTGGGCGCT CATTTCTCAG AGTTATGATG TCCTTGGCCT GGCCTGCTTT TACTCTGCTT GCTTAGATCT GCTGCTCTAT 000240
000241 GGAAAAGGTA AATCTTGCGC AGGTCTCTGC TGTACTCCTG AGGGATTCAG ACCTCAGATG GGGCTCTAGG TTTGGAATAC 000320
000321 AGGCAGTCAT GAACCTGTCC CTCAGGCATG GCCTCTGCCC CTGACCTCTG GCTCCTTAAA GTCTGGGAAC CATGTTGTGA 000400
000401 TTCAGGGGTG TCTGCCTTTG GGGTCTTTTT TCCTTCCCTG TATCACATAC CTTCTATACC CTGGTTCCTA CACTGATATT 000480
000481 ATATACTAGC GTGGTTACCT TCTCTGTCCA CAGGATTGCT GTGTCGGCCC TTTAGTGAGT GTCTGCGTTT CGTTCAAGTC 000560
000561 TACGAGCACA GCCGTGTTCT AACCTCTCAG AGCAATGTCA TGCTGGGGGT CCACTCCTCC CTGGCCATGT GTACTGTAAG 000640
000641 GAGTTCTTCT CTCAATGTGT GACCTGCCCT GTCTATCACC AGTGGGTATC TGAGCTTAAG GCCTCTGTAA TGAGATGTGA 000720
000721 AAAGAGAGAA TTGATGTCCC TGACTAACAG CATCAGACCT TTT
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Predicted Small Protein

Name NONHSAT112717_smProtein_347:475
Length 43
Molecular weight 4765.5299
Aromaticity 0.190476190476
Instability index 57.0857142857
Isoelectric point 5.20367431641
Runs 5
Runs residual 0.0571127185051
Runs probability 0.1
Amino acid sequence MASAPDLWLLKVWEPCCDSGVSAFGVFFPSLYHIPSIPWFLH
Secondary structure LLLLLHHHHHHHLLLLLLLLLLEEEEELLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL
PiMo iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo