Difference between revisions of "NONHSAT113049"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CCCAGCTAATTTTTGTATTTTTAGTAAAGATGGGGTTTTACCATTTCGTCCAGGCTGGTCTTGAACTCCTGACCTCAGGTTATCTGCCAACCTCGGCCTCCTAAAATGCTGGGATTACAGTTGTGAGCCACCACGCCATGCCATGCACAAGGAATTTCAAGACATCCCCATTTACTGTGTCCCCTTATGTGTCTGTGCCTTTGCCGATTTCTTCCACATTCAATCTCTATCCTCCTTTCTCTATCTGCTGAATGATTTTTTCTTCAAGAACTAATTGAAATGTCACTTCCTCCACCCTCAGATAATTAGTTCCTTCCTCCTCGGAAGGGGAGTTGGTGACATTCCTGTGTATCTGCTTGCACAGTGTATTCCCCATGACGTTTTATGCTAAACCTGTCCTGTCCTGACCCTTTCTGCCCTATCACAGCAAACCTGTAATAATTGCATGCATTTCTGAATGCATATTTACTTAATATTTTTCATAATTAATTTTGGAATTTCTAACACTAAATGCATCACCTACTCTGAACTTTAAACAGACAATAATAAATTTGTATAACACTGTAGATTCTGAATTAACTGTATCAGATATTATGTTAAGAACTAATATATATTGCATAGTCTACATCTAGTGATAAGGACTGAAACTGGAGAAATAGTTCTGAGAAACTATATAGAACAGTGATGAACATTTAAAAATAAAATCAAATGAGTCTTCAACTAAAAGAGACTTCTGAATCAAAGAAGGCAGATGGAAAATACGAAAGAAAGAAAAGAATAGAATTTTTAAAAGAGGCAAAGTAATTACAGGTAGTGCAGAATGTGGACAAATGGCAAGCCCTAATCATTAAGGTAGGCATAAGATGAGACACACATGGGACATAAAATTGTGATTCACAATCAACTGGCTTTGTGAGATATCAAATACTATTTAAAGAGCTGATTAAGTGGATTGACGTTTAAGAACAAAAAACTACAAGAACTCCTGACCTCAGGTAATCCACCCGCCTCGGCCTCCCAGAGCGCTGGGATTACAGGAGTGAGCTACTGCACCTGGCCATCCCCCATTCCTTTAAACTAGAGATTTGGGCAAAGCTTATGTGACAGGAGAAAAGAGAGCTAATTCTGACTGTGTGAAACATGTAAATTTTCACTGCACTAAAACCACAGCGTTTTAGTTCATCGAATGCTTAATGGTATTCCTACAAGATTTGTCAGACTTAGCTGGATTTTTGCTGATTTTCATATCACAGCTTTTAAGAGATAAGTCACCTTCAATAACTTTCACATTTACACAATCATCCAAATTTAGGAGCATTCATTTTATGCACAGCTTTTGTTTGCTCTATTCCATAGTCGTCTTTAACACTATCAGTTGACAGTCATTAAACGGAGCCCAAAAGGTCAATTGCTTTTTATGAAGAAAGGAAATATTGTAAACTACAAATCACTTACCCATTTAAGAACTTAGGATTTTCATTAGATTTCCTTAAACCAAATCAACCTATTTGTTGAGCATCTAAATTATGTTA</dnaseq>| | sequence = <dnaseq>CCCAGCTAATTTTTGTATTTTTAGTAAAGATGGGGTTTTACCATTTCGTCCAGGCTGGTCTTGAACTCCTGACCTCAGGTTATCTGCCAACCTCGGCCTCCTAAAATGCTGGGATTACAGTTGTGAGCCACCACGCCATGCCATGCACAAGGAATTTCAAGACATCCCCATTTACTGTGTCCCCTTATGTGTCTGTGCCTTTGCCGATTTCTTCCACATTCAATCTCTATCCTCCTTTCTCTATCTGCTGAATGATTTTTTCTTCAAGAACTAATTGAAATGTCACTTCCTCCACCCTCAGATAATTAGTTCCTTCCTCCTCGGAAGGGGAGTTGGTGACATTCCTGTGTATCTGCTTGCACAGTGTATTCCCCATGACGTTTTATGCTAAACCTGTCCTGTCCTGACCCTTTCTGCCCTATCACAGCAAACCTGTAATAATTGCATGCATTTCTGAATGCATATTTACTTAATATTTTTCATAATTAATTTTGGAATTTCTAACACTAAATGCATCACCTACTCTGAACTTTAAACAGACAATAATAAATTTGTATAACACTGTAGATTCTGAATTAACTGTATCAGATATTATGTTAAGAACTAATATATATTGCATAGTCTACATCTAGTGATAAGGACTGAAACTGGAGAAATAGTTCTGAGAAACTATATAGAACAGTGATGAACATTTAAAAATAAAATCAAATGAGTCTTCAACTAAAAGAGACTTCTGAATCAAAGAAGGCAGATGGAAAATACGAAAGAAAGAAAAGAATAGAATTTTTAAAAGAGGCAAAGTAATTACAGGTAGTGCAGAATGTGGACAAATGGCAAGCCCTAATCATTAAGGTAGGCATAAGATGAGACACACATGGGACATAAAATTGTGATTCACAATCAACTGGCTTTGTGAGATATCAAATACTATTTAAAGAGCTGATTAAGTGGATTGACGTTTAAGAACAAAAAACTACAAGAACTCCTGACCTCAGGTAATCCACCCGCCTCGGCCTCCCAGAGCGCTGGGATTACAGGAGTGAGCTACTGCACCTGGCCATCCCCCATTCCTTTAAACTAGAGATTTGGGCAAAGCTTATGTGACAGGAGAAAAGAGAGCTAATTCTGACTGTGTGAAACATGTAAATTTTCACTGCACTAAAACCACAGCGTTTTAGTTCATCGAATGCTTAATGGTATTCCTACAAGATTTGTCAGACTTAGCTGGATTTTTGCTGATTTTCATATCACAGCTTTTAAGAGATAAGTCACCTTCAATAACTTTCACATTTACACAATCATCCAAATTTAGGAGCATTCATTTTATGCACAGCTTTTGTTTGCTCTATTCCATAGTCGTCTTTAACACTATCAGTTGACAGTCATTAAACGGAGCCCAAAAGGTCAATTGCTTTTTATGAAGAAAGGAAATATTGTAAACTACAAATCACTTACCCATTTAAGAACTTAGGATTTTCATTAGATTTCCTTAAACCAAATCAACCTATTTGTTGAGCATCTAAATTATGTTA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG043901]] |
Revision as of 11:35, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT113049 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1532 nt |
| Genomic location |
chr6-:48056025..48064207 |
| Exon number |
5 |
| Exons |
48056025..48056577,48057363..48057441,48057511..48057975,48060406..48060519,48063886..48064207 |
| Genome context |
|
| Sequence |
000001 CCCAGCTAAT TTTTGTATTT TTAGTAAAGA TGGGGTTTTA CCATTTCGTC CAGGCTGGTC TTGAACTCCT GACCTCAGGT 000080
000081 TATCTGCCAA CCTCGGCCTC CTAAAATGCT GGGATTACAG TTGTGAGCCA CCACGCCATG CCATGCACAA GGAATTTCAA 000160 000161 GACATCCCCA TTTACTGTGT CCCCTTATGT GTCTGTGCCT TTGCCGATTT CTTCCACATT CAATCTCTAT CCTCCTTTCT 000240 000241 CTATCTGCTG AATGATTTTT TCTTCAAGAA CTAATTGAAA TGTCACTTCC TCCACCCTCA GATAATTAGT TCCTTCCTCC 000320 000321 TCGGAAGGGG AGTTGGTGAC ATTCCTGTGT ATCTGCTTGC ACAGTGTATT CCCCATGACG TTTTATGCTA AACCTGTCCT 000400 000401 GTCCTGACCC TTTCTGCCCT ATCACAGCAA ACCTGTAATA ATTGCATGCA TTTCTGAATG CATATTTACT TAATATTTTT 000480 000481 CATAATTAAT TTTGGAATTT CTAACACTAA ATGCATCACC TACTCTGAAC TTTAAACAGA CAATAATAAA TTTGTATAAC 000560 000561 ACTGTAGATT CTGAATTAAC TGTATCAGAT ATTATGTTAA GAACTAATAT ATATTGCATA GTCTACATCT AGTGATAAGG 000640 000641 ACTGAAACTG GAGAAATAGT TCTGAGAAAC TATATAGAAC AGTGATGAAC ATTTAAAAAT AAAATCAAAT GAGTCTTCAA 000720 000721 CTAAAAGAGA CTTCTGAATC AAAGAAGGCA GATGGAAAAT ACGAAAGAAA GAAAAGAATA GAATTTTTAA AAGAGGCAAA 000800 000801 GTAATTACAG GTAGTGCAGA ATGTGGACAA ATGGCAAGCC CTAATCATTA AGGTAGGCAT AAGATGAGAC ACACATGGGA 000880 000881 CATAAAATTG TGATTCACAA TCAACTGGCT TTGTGAGATA TCAAATACTA TTTAAAGAGC TGATTAAGTG GATTGACGTT 000960 000961 TAAGAACAAA AAACTACAAG AACTCCTGAC CTCAGGTAAT CCACCCGCCT CGGCCTCCCA GAGCGCTGGG ATTACAGGAG 001040 001041 TGAGCTACTG CACCTGGCCA TCCCCCATTC CTTTAAACTA GAGATTTGGG CAAAGCTTAT GTGACAGGAG AAAAGAGAGC 001120 001121 TAATTCTGAC TGTGTGAAAC ATGTAAATTT TCACTGCACT AAAACCACAG CGTTTTAGTT CATCGAATGC TTAATGGTAT 001200 001201 TCCTACAAGA TTTGTCAGAC TTAGCTGGAT TTTTGCTGAT TTTCATATCA CAGCTTTTAA GAGATAAGTC ACCTTCAATA 001280 001281 ACTTTCACAT TTACACAATC ATCCAAATTT AGGAGCATTC ATTTTATGCA CAGCTTTTGT TTGCTCTATT CCATAGTCGT 001360 001361 CTTTAACACT ATCAGTTGAC AGTCATTAAA CGGAGCCCAA AAGGTCAATT GCTTTTTATG AAGAAAGGAA ATATTGTAAA 001440 001441 CTACAAATCA CTTACCCATT TAAGAACTTA GGATTTTCAT TAGATTTCCT TAAACCAAAT CAACCTATTT GTTGAGCATC 001520 001521 TAAATTATGT TA |
Predicted Small Protein
| Name | NONHSAT113049_smProtein_1193:1378 |
| Length | 62 |
| Molecular weight | 7053.2246 |
| Aromaticity | 0.16393442623 |
| Instability index | 64.0819672131 |
| Isoelectric point | 7.97845458984 |
| Runs | 10 |
| Runs residual | 0.0111173921236 |
| Runs probability | 0.0440558205264 |
| Amino acid sequence | MVFLQDLSDLAGFLLIFISQLLRDKSPSITFTFTQSSKFRSIHFMHSFCLLYSIVVFNTI S |
| Secondary structure | LEEHHHHHHHHHHHHHHHHHHHHLLLLLEEEEEELLLLEEEEEEEHHHHEEEEEEEEEEL L |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL L |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo o |
