Difference between revisions of "NONHSAT118117"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>gcctagccaacatggcgagaccatgtctctactaaaaatacaaaaatttgccgggcatggtggcacatgcctgtaatcccagcttcttgggagactgaggcacgagaatcacctgaacccaggaggcagaggttacagtgagccgggatcccgccactgcactgcagcctgggcttctgggtgacagagcgagactctgtctcaaacaaatgaacagaaaaagaagaaaggaaTTTGGACACAAAGACACAGGTAGTGGGTCTCCTATCTATATAAGAGAACAGCATGTAATgacacagaggcacacacagaaaagaaggcgagttgaagacagaggcagagaatgggtttatgctgccgcaagccaaggttggagctgccggcagccggaaaaggcaggaaagaattcttcccaagagccttctgaggaagcacggccctgccaacaccttgatttcagacttctaacctccagaactgtaagaaaaagaaattctgtgttctaagccacccaggtttgtggtagtttgACTCtcttcactccaccctgtgaggggcatgatgacccctattttatggataaggaaactgagGGGCAccagtatttttctgcttcactcctgtgggttatctcactacctttctgtggagaccactgttctagatgatgaattcctggaaagtaagacctcagcctttccatctttgctgtcgcccagccccagcacagtgtcccaacagtgcttgtggaataaaaattatgattgtataaattga</dnaseq>| | sequence = <dnaseq>gcctagccaacatggcgagaccatgtctctactaaaaatacaaaaatttgccgggcatggtggcacatgcctgtaatcccagcttcttgggagactgaggcacgagaatcacctgaacccaggaggcagaggttacagtgagccgggatcccgccactgcactgcagcctgggcttctgggtgacagagcgagactctgtctcaaacaaatgaacagaaaaagaagaaaggaaTTTGGACACAAAGACACAGGTAGTGGGTCTCCTATCTATATAAGAGAACAGCATGTAATgacacagaggcacacacagaaaagaaggcgagttgaagacagaggcagagaatgggtttatgctgccgcaagccaaggttggagctgccggcagccggaaaaggcaggaaagaattcttcccaagagccttctgaggaagcacggccctgccaacaccttgatttcagacttctaacctccagaactgtaagaaaaagaaattctgtgttctaagccacccaggtttgtggtagtttgACTCtcttcactccaccctgtgaggggcatgatgacccctattttatggataaggaaactgagGGGCAccagtatttttctgcttcactcctgtgggttatctcactacctttctgtggagaccactgttctagatgatgaattcctggaaagtaagacctcagcctttccatctttgctgtcgcccagccccagcacagtgtcccaacagtgcttgtggaataaaaattatgattgtataaattga</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG046475]] |
Revision as of 13:54, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118117 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
777 nt |
Genomic location |
chr6_qbl_hap6-:3196019..3203284 |
Exon number |
3 |
Exons |
3196019..3196202,3196910..3196972,3202755..3203284 |
Genome context |
|
Sequence |
000001 gcctagccaa catggcgaga ccatgtctct actaaaaata caaaaatttg ccgggcatgg tggcacatgc ctgtaatccc 000080
000081 agcttcttgg gagactgagg cacgagaatc acctgaaccc aggaggcaga ggttacagtg agccgggatc ccgccactgc 000160 000161 actgcagcct gggcttctgg gtgacagagc gagactctgt ctcaaacaaa tgaacagaaa aagaagaaag gaaTTTGGAC 000240 000241 ACAAAGACAC AGGTAGTGGG TCTCCTATCT ATATAAGAGA ACAGCATGTA ATgacacaga ggcacacaca gaaaagaagg 000320 000321 cgagttgaag acagaggcag agaatgggtt tatgctgccg caagccaagg ttggagctgc cggcagccgg aaaaggcagg 000400 000401 aaagaattct tcccaagagc cttctgagga agcacggccc tgccaacacc ttgatttcag acttctaacc tccagaactg 000480 000481 taagaaaaag aaattctgtg ttctaagcca cccaggtttg tggtagtttg ACTCtcttca ctccaccctg tgaggggcat 000560 000561 gatgacccct attttatgga taaggaaact gagGGGCAcc agtatttttc tgcttcactc ctgtgggtta tctcactacc 000640 000641 tttctgtgga gaccactgtt ctagatgatg aattcctgga aagtaagacc tcagcctttc catctttgct gtcgcccagc 000720 000721 cccagcacag tgtcccaaca gtgcttgtgg aataaaaatt atgattgtat aaattga |
Predicted Small Protein
Name | NONHSAT118117_smProtein_209:505 |
Length | 99 |
Molecular weight | 11625.9179 |
Aromaticity | 0.0714285714286 |
Instability index | 72.206122449 |
Isoelectric point | 10.868347168 |
Runs | 12 |
Runs residual | 0.0165935533092 |
Runs probability | 0.0413060118943 |
Amino acid sequence | MNRKRRKEFGHKDTGSGSPIYIREQHVMTQRHTQKRRRVEDRGREWVYAAASQGWSCRQP EKAGKNSSQEPSEEARPCQHLDFRLLTSRTVRKRNSVF |
Secondary structure | LLLLLLLLLLLLLLLLLLLEEEEEEEEEEELLLEEEEEEEELLLEEEHHHHHLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLEEEEEELEEEEELLLL |
PRMN | - |
PiMo | - |