Difference between revisions of "NONHSAT118814"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>GGTGTTGGGGACGGAGCCGTGGATACACCCATACTCAACAGGCAGAGGGAATAGATATTCGACGGGGGACCGGGGTGTCAACAGATGTATCCGAGTTCATGCGTGGCAGGGAGCTGGCGGCGGGACCCGTCCCTCCAGCTGGCTCTCCAACCCCAAGCCTGCATTACGACCACGGCAAAATGCCAGAAGCCCAGAGAAGCGGGGTTTCTGAAGCGGATCGTTTGTTCAGCCCGAGTGCGTGGGGCAGGAACACACCTGGAGGTCATTAAAGAGAAGTCTTCACGGGGCACTCAAGGCACACTGCAAAACAACTTTTTATTTAAAAGGCCAATAATGAGAATAATGAGTTGCACAAGAATGAAAACCTTATCCCTTCCAAAAGATCGGCCTATACATTATGTATAAAGTTAGAATAATTCTAAATACAAAATGCCAAAGACCAGCGGGTCCACTCCTTCCTCTCCTAAGCCATCTTGACAGTTTCACATTTCAGCTTCCAGACGTCATTTCTGTTGCTTTTAAGGGTGCTTACCCAGCCGTGGTCTGTACCAGACAGGGTAGTTGGCACAGCGTAGGCACTGCCAGCAGGCCCTTGGGAGCTTGGCGAGGTGGGAGCCTTGAGAAATAGCTGGCTCGGACCCATGGCGGGGTTTGTGTGTCAACTCCCTGGTCCTCAGAGAATCCGAGCCACGGGAGAGCAAACGCTGCTTCCAAAACCAAAGGAGGAATTTTGCAATCGTTTAGACGGGTTATAATAGAATCTCATTCAGATCTTGAAGGTTATCGGTGCTTTCTGCAGGTTTTTATTCCTCAAAAATGCAGCCAAGCTTTGCTGTGCTTATCTTGGTGGATCTGAGCTAGGTTGGGCTATCTTTTCCTAATTCAATTGCCTTTTTTTTGCAAGGAAGGGGGTTTCTGGTCCATCGGAGGGATCAAGGGCATGGTCCTCACGTCTCGTCAGGAGACAAAAATAGACATTCAGCAGACAGACCACAGCCAGCGCATGCGACCAGCGTCGTTTGGCTATTTTAGTCTCTTCTTAATACACAGACAAACGAGCAAAGAAAAAGCTACTTTGTCCAACACCGGGCCCTGGGTTGGAGTTTAGCCCTGCTTGGCTCTGCCCGCTAGTCTCAGTCAGGTCACTCACCCCAGGCCTGCGGGAACGGTGGTCTTGGTGGTCTTCTCTGGCCCTTCCACCTCTTCTGCCTTGTGGGGACCACCCAAGCCCTCTCCCGACTTGCCCAGAGGCTGCACGCCTCTCTGGCATCACAGTCCGCACGGAGCCTGGCTGTAAGGCTCCACTGAAATCCCCCCGGCGCTGGCTTCGTGCCCCAGGCACACCCACCTCACTTCTGCCTCTTTTCTGCTGGTTTCTGGCCTGTTTGGTCCCAGCCCCTCCCTGCACTCTCTCCGCAGCTGTCTGGTGGGTGATGTGAACCAAGGGACACCCAGGGTCATGGCACTGCCTGGATTCAGTTTGGTAATCGTCGGCAGTCTGTCCCTGGCTTCTGAGCCTGGGGCCTCCTCCTCTTTCTCCCCATCCTGGATGAGCAGGACACGCTGGGGAGACAGCGTCCTACAAAGGCCTCCTAAGAGCTGTGCCCTGTGCCAGGAAAGCCTCCTGTATCTCCAAGGATGTCCCTGGAGCCCTCCAGCTGGTGCCTCTGCTGAGGTCTGTGAGCAGCGGGAATAGGCCTCTAGGGGAGGAGTTGGGGACAGGCCTCTAGGGGAGAGCACACCTCCGGGTACTGCACCTGTGGCTCACCAGCCACCTGCACGGGGCCAGCTTCAGCCTCAGCAGTGTCAGCTCAACAGACGTGACTGCTGTCAAC</dnaseq>|
 
sequence = <dnaseq>GGTGTTGGGGACGGAGCCGTGGATACACCCATACTCAACAGGCAGAGGGAATAGATATTCGACGGGGGACCGGGGTGTCAACAGATGTATCCGAGTTCATGCGTGGCAGGGAGCTGGCGGCGGGACCCGTCCCTCCAGCTGGCTCTCCAACCCCAAGCCTGCATTACGACCACGGCAAAATGCCAGAAGCCCAGAGAAGCGGGGTTTCTGAAGCGGATCGTTTGTTCAGCCCGAGTGCGTGGGGCAGGAACACACCTGGAGGTCATTAAAGAGAAGTCTTCACGGGGCACTCAAGGCACACTGCAAAACAACTTTTTATTTAAAAGGCCAATAATGAGAATAATGAGTTGCACAAGAATGAAAACCTTATCCCTTCCAAAAGATCGGCCTATACATTATGTATAAAGTTAGAATAATTCTAAATACAAAATGCCAAAGACCAGCGGGTCCACTCCTTCCTCTCCTAAGCCATCTTGACAGTTTCACATTTCAGCTTCCAGACGTCATTTCTGTTGCTTTTAAGGGTGCTTACCCAGCCGTGGTCTGTACCAGACAGGGTAGTTGGCACAGCGTAGGCACTGCCAGCAGGCCCTTGGGAGCTTGGCGAGGTGGGAGCCTTGAGAAATAGCTGGCTCGGACCCATGGCGGGGTTTGTGTGTCAACTCCCTGGTCCTCAGAGAATCCGAGCCACGGGAGAGCAAACGCTGCTTCCAAAACCAAAGGAGGAATTTTGCAATCGTTTAGACGGGTTATAATAGAATCTCATTCAGATCTTGAAGGTTATCGGTGCTTTCTGCAGGTTTTTATTCCTCAAAAATGCAGCCAAGCTTTGCTGTGCTTATCTTGGTGGATCTGAGCTAGGTTGGGCTATCTTTTCCTAATTCAATTGCCTTTTTTTTGCAAGGAAGGGGGTTTCTGGTCCATCGGAGGGATCAAGGGCATGGTCCTCACGTCTCGTCAGGAGACAAAAATAGACATTCAGCAGACAGACCACAGCCAGCGCATGCGACCAGCGTCGTTTGGCTATTTTAGTCTCTTCTTAATACACAGACAAACGAGCAAAGAAAAAGCTACTTTGTCCAACACCGGGCCCTGGGTTGGAGTTTAGCCCTGCTTGGCTCTGCCCGCTAGTCTCAGTCAGGTCACTCACCCCAGGCCTGCGGGAACGGTGGTCTTGGTGGTCTTCTCTGGCCCTTCCACCTCTTCTGCCTTGTGGGGACCACCCAAGCCCTCTCCCGACTTGCCCAGAGGCTGCACGCCTCTCTGGCATCACAGTCCGCACGGAGCCTGGCTGTAAGGCTCCACTGAAATCCCCCCGGCGCTGGCTTCGTGCCCCAGGCACACCCACCTCACTTCTGCCTCTTTTCTGCTGGTTTCTGGCCTGTTTGGTCCCAGCCCCTCCCTGCACTCTCTCCGCAGCTGTCTGGTGGGTGATGTGAACCAAGGGACACCCAGGGTCATGGCACTGCCTGGATTCAGTTTGGTAATCGTCGGCAGTCTGTCCCTGGCTTCTGAGCCTGGGGCCTCCTCCTCTTTCTCCCCATCCTGGATGAGCAGGACACGCTGGGGAGACAGCGTCCTACAAAGGCCTCCTAAGAGCTGTGCCCTGTGCCAGGAAAGCCTCCTGTATCTCCAAGGATGTCCCTGGAGCCCTCCAGCTGGTGCCTCTGCTGAGGTCTGTGAGCAGCGGGAATAGGCCTCTAGGGGAGGAGTTGGGGACAGGCCTCTAGGGGAGAGCACACCTCCGGGTACTGCACCTGTGGCTCACCAGCCACCTGCACGGGGCCAGCTTCAGCCTCAGCAGTGTCAGCTCAACAGACGTGACTGCTGTCAAC</dnaseq>|
 
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[[Category:Antisense]]
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[[Category:Antisense]][[Category:NONHSAG046801]]

Revision as of 06:02, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT118814

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1835 nt

Genomic location

chr7-:2652824..2657331

Exon number

2

Exons

2652824..2654610,2657284..2657331

Genome context

Sequence
000001 GGTGTTGGGG ACGGAGCCGT GGATACACCC ATACTCAACA GGCAGAGGGA ATAGATATTC GACGGGGGAC CGGGGTGTCA 000080
000081 ACAGATGTAT CCGAGTTCAT GCGTGGCAGG GAGCTGGCGG CGGGACCCGT CCCTCCAGCT GGCTCTCCAA CCCCAAGCCT 000160
000161 GCATTACGAC CACGGCAAAA TGCCAGAAGC CCAGAGAAGC GGGGTTTCTG AAGCGGATCG TTTGTTCAGC CCGAGTGCGT 000240
000241 GGGGCAGGAA CACACCTGGA GGTCATTAAA GAGAAGTCTT CACGGGGCAC TCAAGGCACA CTGCAAAACA ACTTTTTATT 000320
000321 TAAAAGGCCA ATAATGAGAA TAATGAGTTG CACAAGAATG AAAACCTTAT CCCTTCCAAA AGATCGGCCT ATACATTATG 000400
000401 TATAAAGTTA GAATAATTCT AAATACAAAA TGCCAAAGAC CAGCGGGTCC ACTCCTTCCT CTCCTAAGCC ATCTTGACAG 000480
000481 TTTCACATTT CAGCTTCCAG ACGTCATTTC TGTTGCTTTT AAGGGTGCTT ACCCAGCCGT GGTCTGTACC AGACAGGGTA 000560
000561 GTTGGCACAG CGTAGGCACT GCCAGCAGGC CCTTGGGAGC TTGGCGAGGT GGGAGCCTTG AGAAATAGCT GGCTCGGACC 000640
000641 CATGGCGGGG TTTGTGTGTC AACTCCCTGG TCCTCAGAGA ATCCGAGCCA CGGGAGAGCA AACGCTGCTT CCAAAACCAA 000720
000721 AGGAGGAATT TTGCAATCGT TTAGACGGGT TATAATAGAA TCTCATTCAG ATCTTGAAGG TTATCGGTGC TTTCTGCAGG 000800
000801 TTTTTATTCC TCAAAAATGC AGCCAAGCTT TGCTGTGCTT ATCTTGGTGG ATCTGAGCTA GGTTGGGCTA TCTTTTCCTA 000880
000881 ATTCAATTGC CTTTTTTTTG CAAGGAAGGG GGTTTCTGGT CCATCGGAGG GATCAAGGGC ATGGTCCTCA CGTCTCGTCA 000960
000961 GGAGACAAAA ATAGACATTC AGCAGACAGA CCACAGCCAG CGCATGCGAC CAGCGTCGTT TGGCTATTTT AGTCTCTTCT 001040
001041 TAATACACAG ACAAACGAGC AAAGAAAAAG CTACTTTGTC CAACACCGGG CCCTGGGTTG GAGTTTAGCC CTGCTTGGCT 001120
001121 CTGCCCGCTA GTCTCAGTCA GGTCACTCAC CCCAGGCCTG CGGGAACGGT GGTCTTGGTG GTCTTCTCTG GCCCTTCCAC 001200
001201 CTCTTCTGCC TTGTGGGGAC CACCCAAGCC CTCTCCCGAC TTGCCCAGAG GCTGCACGCC TCTCTGGCAT CACAGTCCGC 001280
001281 ACGGAGCCTG GCTGTAAGGC TCCACTGAAA TCCCCCCGGC GCTGGCTTCG TGCCCCAGGC ACACCCACCT CACTTCTGCC 001360
001361 TCTTTTCTGC TGGTTTCTGG CCTGTTTGGT CCCAGCCCCT CCCTGCACTC TCTCCGCAGC TGTCTGGTGG GTGATGTGAA 001440
001441 CCAAGGGACA CCCAGGGTCA TGGCACTGCC TGGATTCAGT TTGGTAATCG TCGGCAGTCT GTCCCTGGCT TCTGAGCCTG 001520
001521 GGGCCTCCTC CTCTTTCTCC CCATCCTGGA TGAGCAGGAC ACGCTGGGGA GACAGCGTCC TACAAAGGCC TCCTAAGAGC 001600
001601 TGTGCCCTGT GCCAGGAAAG CCTCCTGTAT CTCCAAGGAT GTCCCTGGAG CCCTCCAGCT GGTGCCTCTG CTGAGGTCTG 001680
001681 TGAGCAGCGG GAATAGGCCT CTAGGGGAGG AGTTGGGGAC AGGCCTCTAG GGGAGAGCAC ACCTCCGGGT ACTGCACCTG 001760
001761 TGGCTCACCA GCCACCTGCA CGGGGCCAGC TTCAGCCTCA GCAGTGTCAG CTCAACAGAC GTGACTGCTG TCAAC
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Predicted Small Protein

Name NONHSAT118814_smProtein_98:268
Length 57
Molecular weight 5879.4373
Aromaticity 0.0535714285714
Instability index 78.2285714286
Isoelectric point 8.39923095703
Runs 7
Runs residual 0.0282982045277
Runs probability 0.0238852297676
Amino acid sequence MRGRELAAGPVPPAGSPTPSLHYDHGKMPEAQRSGVSEADRLFSPSAWGRNTPGGH
Secondary structure LLLEEELLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLHHHHLLLLLLLLLLLLLLL
PRMN -
PiMo -