Difference between revisions of "NONHSAT119197"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
Line 42: Line 42:
 
sequence = <dnaseq>tttcacaagacagTGCCGAAAGTGAAGGAAGCTCCTGTCCCTCCTAAAGCTGAAGCCAAACCGAAGGCTTTCAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCACAGCCACCAAAAAAGAAGATCCGCATGTCACCCACCTTCCAGCAGCCCAAGACACTGAGACTCTGGAGGCAGCCCAGATATCCTCGGAAGAGCTCCCCCAGGAGAAACAAGCTTGACTACTATACCATCATCAAGTTTCTGCTGACCACTGAGTCTGCCATGAAGAAGATAGAAGACAACAACATGCTTGTGTTCACTGAGGAAGTTAAAGCCAACAAGCACCAGATCAAACAGGCTGTGAAGGAGCTCTGTGACATTGATGTGGCCAAGGTGTCAACACCCTAATTCGGCCTGATGGAGAAAAGAAGGCATATGTTCGACTGGCTCCTGATTACAATGCTTTGAATCTTGCCAACAAAATTGGGATCATCTAA</dnaseq>|
 
sequence = <dnaseq>tttcacaagacagTGCCGAAAGTGAAGGAAGCTCCTGTCCCTCCTAAAGCTGAAGCCAAACCGAAGGCTTTCAAGGCCAAGAAGGCAGTGTTGAAAGGTGTCCACAGCCACCAAAAAAGAAGATCCGCATGTCACCCACCTTCCAGCAGCCCAAGACACTGAGACTCTGGAGGCAGCCCAGATATCCTCGGAAGAGCTCCCCCAGGAGAAACAAGCTTGACTACTATACCATCATCAAGTTTCTGCTGACCACTGAGTCTGCCATGAAGAAGATAGAAGACAACAACATGCTTGTGTTCACTGAGGAAGTTAAAGCCAACAAGCACCAGATCAAACAGGCTGTGAAGGAGCTCTGTGACATTGATGTGGCCAAGGTGTCAACACCCTAATTCGGCCTGATGGAGAAAAGAAGGCATATGTTCGACTGGCTCCTGATTACAATGCTTTGAATCTTGCCAACAAAATTGGGATCATCTAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG046944]]

Revision as of 06:10, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT119197

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

478 nt

Genomic location

chr7-:11046026..11046503

Exon number

1

Exons

11046026..11046503

Genome context

Sequence
000001 tttcacaaga cagTGCCGAA AGTGAAGGAA GCTCCTGTCC CTCCTAAAGC TGAAGCCAAA CCGAAGGCTT TCAAGGCCAA 000080
000081 GAAGGCAGTG TTGAAAGGTG TCCACAGCCA CCAAAAAAGA AGATCCGCAT GTCACCCACC TTCCAGCAGC CCAAGACACT 000160
000161 GAGACTCTGG AGGCAGCCCA GATATCCTCG GAAGAGCTCC CCCAGGAGAA ACAAGCTTGA CTACTATACC ATCATCAAGT 000240
000241 TTCTGCTGAC CACTGAGTCT GCCATGAAGA AGATAGAAGA CAACAACATG CTTGTGTTCA CTGAGGAAGT TAAAGCCAAC 000320
000321 AAGCACCAGA TCAAACAGGC TGTGAAGGAG CTCTGTGACA TTGATGTGGC CAAGGTGTCA ACACCCTAAT TCGGCCTGAT 000400
000401 GGAGAAAAGA AGGCATATGT TCGACTGGCT CCTGATTACA ATGCTTTGAA TCTTGCCAAC AAAATTGGGA TCATCTAA
[back to top]

Predicted Small Protein

Name NONHSAT119197_smProtein_128:388
Length 87
Molecular weight 10182.7847
Aromaticity 0.0813953488372
Instability index 72.0558139535
Isoelectric point 9.88409423828
Runs 14
Runs residual 0.0231690385283
Runs probability 0.0458841194135
Amino acid sequence MSPTFQQPKTLRLWRQPRYPRKSSPRRNKLDYYTIIKFLLTTESAMKKIEDNNMLVFTEE
VKANKHQIKQAVKELCDIDVAKVSTP
Secondary structure LLLLLLLLLEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHLLHHHHHHHHLLLLEEEEEH
HHHLHHHHHHHHHHHHLLLLEEELLL
PRMN -
PiMo -