Difference between revisions of "NONHSAT119879"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>agaaacagaaacaaacagcaacaacaacaacaacaaaaacaatgcatttaattaaatgaagatgagctcatgctggagtagggtggactctgaacccagtgggacaagcgtccttattaagaagagggaaatctggacacacacagagcagagaccgccgtgtgaagatggaggcagagatcggagagatgctgccacacgccacaaatgcctggggctcccagaaactacacggagcctcccccagcggcttcagcaggagcatggctcggccaacactttgatcttggtcttccagcctccagaacgTTTTCCTAAAATTCCCTTTTCCACTGGTGTGTGGTGCAAGATGAGGCACATTTTCCATGGATGGTGAACAGAGGGAGGAGCCTTTTGATCACAACCAGGTCACCCCACTTCTAAGCCACTGTGCCTCCAGCCCCACAAGACTAAGGAGAGAGAGCGCAGCGTGGTGGAGAGTGAGCTGTGCTGGGACCATTGTTTCCGTAACCTCGTTTTCTGTGTCCAGCTGACACACCTTCAAAGTGGCATCAGGTCCTAAACTGTAGCTTGCAATGTGCCTGTTTCCAGAAACCAAGGTGAAAGTGCTTTTAGACagtgttcccatgcaagagtcccttcccagcttttttctggaaatgcatgtttctctgaactctgagtcccaagaaaaatcacttgagacaccaagaaaatgggggaagtgctaaaattgtgtgggaattcaagcttaacaataaacatcaagacatttttgataaaaatgaatccactgacatcggggaggagcaagagaacagcacgctgacactgggtcagaggctaagaccgacatttctgggaaccactcccggaagggcacagaggagacgctttcagcctctcatcagccagcctggcctgtagctgctgcacgttatgagtgtgttcctggcatgactgcttctaacaAAGAAATGCTGAGGCAGTGTCACGCTGGTGTCTGTCCTCCTTACAGAATGCCTGAACAGTTCCATTGACTCAAAGTGAAGATCAAAAGAACCAAATGACAGCAATAGCCAAGTGTAATCATCAGTAACCCTGTGTTCTATCCACAGTTAAAAGAATATTGGCAGAGAAACAGCCTTGGTGTTCCAGCAGGAGTGAAGAGGAACAGGAAAACGAGTGGCAGTAGCCCTGAAACAGCCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCAGGCCAGGCTTCTGGGGACAGGGGGCCCAAGGCACAGTAGACGGTAATTTTTAAGATTATGGATGGACTGTTGGGtactggttaagaattctgggtttggccaggcacagtggctcatgcctgtaatcccagcactttgggagactgaggccggtggatcacgagctcaggaaattgagaccatcctggctaaca</dnaseq>| | sequence = <dnaseq>agaaacagaaacaaacagcaacaacaacaacaacaaaaacaatgcatttaattaaatgaagatgagctcatgctggagtagggtggactctgaacccagtgggacaagcgtccttattaagaagagggaaatctggacacacacagagcagagaccgccgtgtgaagatggaggcagagatcggagagatgctgccacacgccacaaatgcctggggctcccagaaactacacggagcctcccccagcggcttcagcaggagcatggctcggccaacactttgatcttggtcttccagcctccagaacgTTTTCCTAAAATTCCCTTTTCCACTGGTGTGTGGTGCAAGATGAGGCACATTTTCCATGGATGGTGAACAGAGGGAGGAGCCTTTTGATCACAACCAGGTCACCCCACTTCTAAGCCACTGTGCCTCCAGCCCCACAAGACTAAGGAGAGAGAGCGCAGCGTGGTGGAGAGTGAGCTGTGCTGGGACCATTGTTTCCGTAACCTCGTTTTCTGTGTCCAGCTGACACACCTTCAAAGTGGCATCAGGTCCTAAACTGTAGCTTGCAATGTGCCTGTTTCCAGAAACCAAGGTGAAAGTGCTTTTAGACagtgttcccatgcaagagtcccttcccagcttttttctggaaatgcatgtttctctgaactctgagtcccaagaaaaatcacttgagacaccaagaaaatgggggaagtgctaaaattgtgtgggaattcaagcttaacaataaacatcaagacatttttgataaaaatgaatccactgacatcggggaggagcaagagaacagcacgctgacactgggtcagaggctaagaccgacatttctgggaaccactcccggaagggcacagaggagacgctttcagcctctcatcagccagcctggcctgtagctgctgcacgttatgagtgtgttcctggcatgactgcttctaacaAAGAAATGCTGAGGCAGTGTCACGCTGGTGTCTGTCCTCCTTACAGAATGCCTGAACAGTTCCATTGACTCAAAGTGAAGATCAAAAGAACCAAATGACAGCAATAGCCAAGTGTAATCATCAGTAACCCTGTGTTCTATCCACAGTTAAAAGAATATTGGCAGAGAAACAGCCTTGGTGTTCCAGCAGGAGTGAAGAGGAACAGGAAAACGAGTGGCAGTAGCCCTGAAACAGCCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCAGGCCAGGCTTCTGGGGACAGGGGGCCCAAGGCACAGTAGACGGTAATTTTTAAGATTATGGATGGACTGTTGGGtactggttaagaattctgggtttggccaggcacagtggctcatgcctgtaatcccagcactttgggagactgaggccggtggatcacgagctcaggaaattgagaccatcctggctaaca</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG047260]] |
Revision as of 06:25, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119879 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1445 nt |
Genomic location |
chr7-:30563776..30608489 |
Exon number |
5 |
Exons |
30563776..30564102,30590252..30590397,30601082..30601744,30603347..30603614,30608449..30608489 |
Genome context |
|
Sequence |
000001 agaaacagaa acaaacagca acaacaacaa caacaaaaac aatgcattta attaaatgaa gatgagctca tgctggagta 000080
000081 gggtggactc tgaacccagt gggacaagcg tccttattaa gaagagggaa atctggacac acacagagca gagaccgccg 000160 000161 tgtgaagatg gaggcagaga tcggagagat gctgccacac gccacaaatg cctggggctc ccagaaacta cacggagcct 000240 000241 cccccagcgg cttcagcagg agcatggctc ggccaacact ttgatcttgg tcttccagcc tccagaacgT TTTCCTAAAA 000320 000321 TTCCCTTTTC CACTGGTGTG TGGTGCAAGA TGAGGCACAT TTTCCATGGA TGGTGAACAG AGGGAGGAGC CTTTTGATCA 000400 000401 CAACCAGGTC ACCCCACTTC TAAGCCACTG TGCCTCCAGC CCCACAAGAC TAAGGAGAGA GAGCGCAGCG TGGTGGAGAG 000480 000481 TGAGCTGTGC TGGGACCATT GTTTCCGTAA CCTCGTTTTC TGTGTCCAGC TGACACACCT TCAAAGTGGC ATCAGGTCCT 000560 000561 AAACTGTAGC TTGCAATGTG CCTGTTTCCA GAAACCAAGG TGAAAGTGCT TTTAGACagt gttcccatgc aagagtccct 000640 000641 tcccagcttt tttctggaaa tgcatgtttc tctgaactct gagtcccaag aaaaatcact tgagacacca agaaaatggg 000720 000721 ggaagtgcta aaattgtgtg ggaattcaag cttaacaata aacatcaaga catttttgat aaaaatgaat ccactgacat 000800 000801 cggggaggag caagagaaca gcacgctgac actgggtcag aggctaagac cgacatttct gggaaccact cccggaaggg 000880 000881 cacagaggag acgctttcag cctctcatca gccagcctgg cctgtagctg ctgcacgtta tgagtgtgtt cctggcatga 000960 000961 ctgcttctaa caAAGAAATG CTGAGGCAGT GTCACGCTGG TGTCTGTCCT CCTTACAGAA TGCCTGAACA GTTCCATTGA 001040 001041 CTCAAAGTGA AGATCAAAAG AACCAAATGA CAGCAATAGC CAAGTGTAAT CATCAGTAAC CCTGTGTTCT ATCCACAGTT 001120 001121 AAAAGAATAT TGGCAGAGAA ACAGCCTTGG TGTTCCAGCA GGAGTGAAGA GGAACAGGAA AACGAGTGGC AGTAGCCCTG 001200 001201 AAACAGCCAC TTCTGGTGGT TGCCACTCAC CTGAGGATGT GAGTCTTGGC AGGCCAGGCT TCTGGGGACA GGGGGCCCAA 001280 001281 GGCACAGTAG ACGGTAATTT TTAAGATTAT GGATGGACTG TTGGGtactg gttaagaatt ctgggtttgg ccaggcacag 001360 001361 tggctcatgc ctgtaatccc agcactttgg gagactgagg ccggtggatc acgagctcag gaaattgaga ccatcctggc 001440 001441 taaca |
Predicted Small Protein
Name | NONHSAT119879_smProtein_365:532 |
Length | 56 |
Molecular weight | 6107.6972 |
Aromaticity | 0.0727272727273 |
Instability index | 60.8509090909 |
Isoelectric point | 6.01177978516 |
Runs | 8 |
Runs residual | 0.00606060606061 |
Runs probability | 0.0452989754461 |
Amino acid sequence | MDGEQREEPFDHNQVTPLLSHCASSPTRLRRESAAWWRVSCAGTIVSVTSFSVSS |
Secondary structure | LLLLLLLLLLLLLLLLLLLEELLLLLLHHHHHHHHEEEEELLLEEEEEEEEEEEL |
PRMN | - |
PiMo | - |