Difference between revisions of "NONHSAT119879"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>agaaacagaaacaaacagcaacaacaacaacaacaaaaacaatgcatttaattaaatgaagatgagctcatgctggagtagggtggactctgaacccagtgggacaagcgtccttattaagaagagggaaatctggacacacacagagcagagaccgccgtgtgaagatggaggcagagatcggagagatgctgccacacgccacaaatgcctggggctcccagaaactacacggagcctcccccagcggcttcagcaggagcatggctcggccaacactttgatcttggtcttccagcctccagaacgTTTTCCTAAAATTCCCTTTTCCACTGGTGTGTGGTGCAAGATGAGGCACATTTTCCATGGATGGTGAACAGAGGGAGGAGCCTTTTGATCACAACCAGGTCACCCCACTTCTAAGCCACTGTGCCTCCAGCCCCACAAGACTAAGGAGAGAGAGCGCAGCGTGGTGGAGAGTGAGCTGTGCTGGGACCATTGTTTCCGTAACCTCGTTTTCTGTGTCCAGCTGACACACCTTCAAAGTGGCATCAGGTCCTAAACTGTAGCTTGCAATGTGCCTGTTTCCAGAAACCAAGGTGAAAGTGCTTTTAGACagtgttcccatgcaagagtcccttcccagcttttttctggaaatgcatgtttctctgaactctgagtcccaagaaaaatcacttgagacaccaagaaaatgggggaagtgctaaaattgtgtgggaattcaagcttaacaataaacatcaagacatttttgataaaaatgaatccactgacatcggggaggagcaagagaacagcacgctgacactgggtcagaggctaagaccgacatttctgggaaccactcccggaagggcacagaggagacgctttcagcctctcatcagccagcctggcctgtagctgctgcacgttatgagtgtgttcctggcatgactgcttctaacaAAGAAATGCTGAGGCAGTGTCACGCTGGTGTCTGTCCTCCTTACAGAATGCCTGAACAGTTCCATTGACTCAAAGTGAAGATCAAAAGAACCAAATGACAGCAATAGCCAAGTGTAATCATCAGTAACCCTGTGTTCTATCCACAGTTAAAAGAATATTGGCAGAGAAACAGCCTTGGTGTTCCAGCAGGAGTGAAGAGGAACAGGAAAACGAGTGGCAGTAGCCCTGAAACAGCCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCAGGCCAGGCTTCTGGGGACAGGGGGCCCAAGGCACAGTAGACGGTAATTTTTAAGATTATGGATGGACTGTTGGGtactggttaagaattctgggtttggccaggcacagtggctcatgcctgtaatcccagcactttgggagactgaggccggtggatcacgagctcaggaaattgagaccatcctggctaaca</dnaseq>|
 
sequence = <dnaseq>agaaacagaaacaaacagcaacaacaacaacaacaaaaacaatgcatttaattaaatgaagatgagctcatgctggagtagggtggactctgaacccagtgggacaagcgtccttattaagaagagggaaatctggacacacacagagcagagaccgccgtgtgaagatggaggcagagatcggagagatgctgccacacgccacaaatgcctggggctcccagaaactacacggagcctcccccagcggcttcagcaggagcatggctcggccaacactttgatcttggtcttccagcctccagaacgTTTTCCTAAAATTCCCTTTTCCACTGGTGTGTGGTGCAAGATGAGGCACATTTTCCATGGATGGTGAACAGAGGGAGGAGCCTTTTGATCACAACCAGGTCACCCCACTTCTAAGCCACTGTGCCTCCAGCCCCACAAGACTAAGGAGAGAGAGCGCAGCGTGGTGGAGAGTGAGCTGTGCTGGGACCATTGTTTCCGTAACCTCGTTTTCTGTGTCCAGCTGACACACCTTCAAAGTGGCATCAGGTCCTAAACTGTAGCTTGCAATGTGCCTGTTTCCAGAAACCAAGGTGAAAGTGCTTTTAGACagtgttcccatgcaagagtcccttcccagcttttttctggaaatgcatgtttctctgaactctgagtcccaagaaaaatcacttgagacaccaagaaaatgggggaagtgctaaaattgtgtgggaattcaagcttaacaataaacatcaagacatttttgataaaaatgaatccactgacatcggggaggagcaagagaacagcacgctgacactgggtcagaggctaagaccgacatttctgggaaccactcccggaagggcacagaggagacgctttcagcctctcatcagccagcctggcctgtagctgctgcacgttatgagtgtgttcctggcatgactgcttctaacaAAGAAATGCTGAGGCAGTGTCACGCTGGTGTCTGTCCTCCTTACAGAATGCCTGAACAGTTCCATTGACTCAAAGTGAAGATCAAAAGAACCAAATGACAGCAATAGCCAAGTGTAATCATCAGTAACCCTGTGTTCTATCCACAGTTAAAAGAATATTGGCAGAGAAACAGCCTTGGTGTTCCAGCAGGAGTGAAGAGGAACAGGAAAACGAGTGGCAGTAGCCCTGAAACAGCCACTTCTGGTGGTTGCCACTCACCTGAGGATGTGAGTCTTGGCAGGCCAGGCTTCTGGGGACAGGGGGCCCAAGGCACAGTAGACGGTAATTTTTAAGATTATGGATGGACTGTTGGGtactggttaagaattctgggtttggccaggcacagtggctcatgcctgtaatcccagcactttgggagactgaggccggtggatcacgagctcaggaaattgagaccatcctggctaaca</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG047260]]

Revision as of 06:25, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT119879

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1445 nt

Genomic location

chr7-:30563776..30608489

Exon number

5

Exons

30563776..30564102,30590252..30590397,30601082..30601744,30603347..30603614,30608449..30608489

Genome context

Sequence
000001 agaaacagaa acaaacagca acaacaacaa caacaaaaac aatgcattta attaaatgaa gatgagctca tgctggagta 000080
000081 gggtggactc tgaacccagt gggacaagcg tccttattaa gaagagggaa atctggacac acacagagca gagaccgccg 000160
000161 tgtgaagatg gaggcagaga tcggagagat gctgccacac gccacaaatg cctggggctc ccagaaacta cacggagcct 000240
000241 cccccagcgg cttcagcagg agcatggctc ggccaacact ttgatcttgg tcttccagcc tccagaacgT TTTCCTAAAA 000320
000321 TTCCCTTTTC CACTGGTGTG TGGTGCAAGA TGAGGCACAT TTTCCATGGA TGGTGAACAG AGGGAGGAGC CTTTTGATCA 000400
000401 CAACCAGGTC ACCCCACTTC TAAGCCACTG TGCCTCCAGC CCCACAAGAC TAAGGAGAGA GAGCGCAGCG TGGTGGAGAG 000480
000481 TGAGCTGTGC TGGGACCATT GTTTCCGTAA CCTCGTTTTC TGTGTCCAGC TGACACACCT TCAAAGTGGC ATCAGGTCCT 000560
000561 AAACTGTAGC TTGCAATGTG CCTGTTTCCA GAAACCAAGG TGAAAGTGCT TTTAGACagt gttcccatgc aagagtccct 000640
000641 tcccagcttt tttctggaaa tgcatgtttc tctgaactct gagtcccaag aaaaatcact tgagacacca agaaaatggg 000720
000721 ggaagtgcta aaattgtgtg ggaattcaag cttaacaata aacatcaaga catttttgat aaaaatgaat ccactgacat 000800
000801 cggggaggag caagagaaca gcacgctgac actgggtcag aggctaagac cgacatttct gggaaccact cccggaaggg 000880
000881 cacagaggag acgctttcag cctctcatca gccagcctgg cctgtagctg ctgcacgtta tgagtgtgtt cctggcatga 000960
000961 ctgcttctaa caAAGAAATG CTGAGGCAGT GTCACGCTGG TGTCTGTCCT CCTTACAGAA TGCCTGAACA GTTCCATTGA 001040
001041 CTCAAAGTGA AGATCAAAAG AACCAAATGA CAGCAATAGC CAAGTGTAAT CATCAGTAAC CCTGTGTTCT ATCCACAGTT 001120
001121 AAAAGAATAT TGGCAGAGAA ACAGCCTTGG TGTTCCAGCA GGAGTGAAGA GGAACAGGAA AACGAGTGGC AGTAGCCCTG 001200
001201 AAACAGCCAC TTCTGGTGGT TGCCACTCAC CTGAGGATGT GAGTCTTGGC AGGCCAGGCT TCTGGGGACA GGGGGCCCAA 001280
001281 GGCACAGTAG ACGGTAATTT TTAAGATTAT GGATGGACTG TTGGGtactg gttaagaatt ctgggtttgg ccaggcacag 001360
001361 tggctcatgc ctgtaatccc agcactttgg gagactgagg ccggtggatc acgagctcag gaaattgaga ccatcctggc 001440
001441 taaca
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Predicted Small Protein

Name NONHSAT119879_smProtein_365:532
Length 56
Molecular weight 6107.6972
Aromaticity 0.0727272727273
Instability index 60.8509090909
Isoelectric point 6.01177978516
Runs 8
Runs residual 0.00606060606061
Runs probability 0.0452989754461
Amino acid sequence MDGEQREEPFDHNQVTPLLSHCASSPTRLRRESAAWWRVSCAGTIVSVTSFSVSS
Secondary structure LLLLLLLLLLLLLLLLLLLEELLLLLLHHHHHHHHEEEEELLLEEEEEEEEEEEL
PRMN -
PiMo -