Difference between revisions of "NONHSAT122160"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>GCGGTGTTCTAGCAGGTGGCTGCTTTCTCTGGGCTGGCTGTGGGAGGCTCCCGAGGTGGGGACCCGGCCGGGATGGCTGCAGCGGCGGCCGGGGCTGGGAGCGGGCCCTCGGCGGCCCAGGAGAAGCAGTTCCTGCCGGCGCTGCTGAGTTTCTTCATCTACAACCCGCGCTTCTGGCCGCGGGAAGGAGAGGTTGTTCGGAATCCTATAATTGAAAAACAGTAAAGATGGAAAACCAGTTATTGAATATCAAGAGGAGGAGTTGTTGGACAAGGTTTATAGCTCGGTGCTGCAGCAGTGCTACAGCATGTACAAGAAGTCTCAGGGGATCCAGAACTGCAGCCAGTCCTTGCTGGGCTGTTCCTGTCCATGTGCCTGGTCACGGTGCTGGGGAACCTGCTCATCATCCTGGCCATCAGCCCTGACTCCCACCTCCACACCCCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGATTGTGGACATCCAGTCTCACAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGTCTCTCTTTGCCATTTTTGGAGGCATGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTATGACTGGTTTGTAGCCATCTGTCACCCGCTATATCATTCACCATCATGAACCCGTGTTTCTGTGC</dnaseq>| | sequence = <dnaseq>GCGGTGTTCTAGCAGGTGGCTGCTTTCTCTGGGCTGGCTGTGGGAGGCTCCCGAGGTGGGGACCCGGCCGGGATGGCTGCAGCGGCGGCCGGGGCTGGGAGCGGGCCCTCGGCGGCCCAGGAGAAGCAGTTCCTGCCGGCGCTGCTGAGTTTCTTCATCTACAACCCGCGCTTCTGGCCGCGGGAAGGAGAGGTTGTTCGGAATCCTATAATTGAAAAACAGTAAAGATGGAAAACCAGTTATTGAATATCAAGAGGAGGAGTTGTTGGACAAGGTTTATAGCTCGGTGCTGCAGCAGTGCTACAGCATGTACAAGAAGTCTCAGGGGATCCAGAACTGCAGCCAGTCCTTGCTGGGCTGTTCCTGTCCATGTGCCTGGTCACGGTGCTGGGGAACCTGCTCATCATCCTGGCCATCAGCCCTGACTCCCACCTCCACACCCCCATGTACTTCTTCCTCTCCAACCTGTCCTTGCCTGACATCGGTTTCACCTCCACCACGGTCCCCAAGATGATTGTGGACATCCAGTCTCACAGCAGAGTCATCTCCTATGCAGGCTGCCTGACTCAGATGTCTCTCTTTGCCATTTTTGGAGGCATGGAAGAGAGACATGCTCCTGAGTGTGATGGCCTATGACTGGTTTGTAGCCATCTGTCACCCGCTATATCATTCACCATCATGAACCCGTGTTTCTGTGC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG048277]] |
Revision as of 07:32, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT122160 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
698 nt |
| Genomic location |
chr7-:97595659..97601656 |
| Exon number |
4 |
| Exons |
97595659..97596289,97598317..97598364,97599082..97599157,97601447..97601656 |
| Genome context |
|
| Sequence |
000001 GCGGTGTTCT AGCAGGTGGC TGCTTTCTCT GGGCTGGCTG TGGGAGGCTC CCGAGGTGGG GACCCGGCCG GGATGGCTGC 000080
000081 AGCGGCGGCC GGGGCTGGGA GCGGGCCCTC GGCGGCCCAG GAGAAGCAGT TCCTGCCGGC GCTGCTGAGT TTCTTCATCT 000160 000161 ACAACCCGCG CTTCTGGCCG CGGGAAGGAG AGGTTGTTCG GAATCCTATA ATTGAAAAAC AGTAAAGATG GAAAACCAGT 000240 000241 TATTGAATAT CAAGAGGAGG AGTTGTTGGA CAAGGTTTAT AGCTCGGTGC TGCAGCAGTG CTACAGCATG TACAAGAAGT 000320 000321 CTCAGGGGAT CCAGAACTGC AGCCAGTCCT TGCTGGGCTG TTCCTGTCCA TGTGCCTGGT CACGGTGCTG GGGAACCTGC 000400 000401 TCATCATCCT GGCCATCAGC CCTGACTCCC ACCTCCACAC CCCCATGTAC TTCTTCCTCT CCAACCTGTC CTTGCCTGAC 000480 000481 ATCGGTTTCA CCTCCACCAC GGTCCCCAAG ATGATTGTGG ACATCCAGTC TCACAGCAGA GTCATCTCCT ATGCAGGCTG 000560 000561 CCTGACTCAG ATGTCTCTCT TTGCCATTTT TGGAGGCATG GAAGAGAGAC ATGCTCCTGA GTGTGATGGC CTATGACTGG 000640 000641 TTTGTAGCCA TCTGTCACCC GCTATATCAT TCACCATCAT GAACCCGTGT TTCTGTGC |
Predicted Small Protein
| Name | NONHSAT122160_smProtein_227:424 |
| Length | 66 |
| Molecular weight | 7061.011 |
| Aromaticity | 0.0461538461538 |
| Instability index | 86.0907692308 |
| Isoelectric point | 9.93475341797 |
| Runs | 9 |
| Runs residual | 0.0118269230769 |
| Runs probability | 0.0334353961805 |
| Amino acid sequence | MENQLLNIKRRSCWTRFIARCCSSATACTRSLRGSRTAASPCWAVPVHVPGHGAGEPAHH PGHQP |
| Secondary structure | LLLHHHLLLHHHHHHHHHHHHLLLLHHHHHLLLLLLLLLLLLEEEEEELLLLLLLLLLLL LLLLL |
| PRMN | - |
| PiMo | - |
