Difference between revisions of "NONHSAT123343"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>gatggctcccacatttttactgtcataaataggcttcagtggacaCATTAGGCATAGAAGTTGTtctatttcttcatctgtaaaatggggattgtaatatttactttccagggtcatagggataagagagctaaaggatgtaaagtccggaactagtgcTGTCTTTTAGATCATGGTAACATCAGTTTGCAAAAGAAACGAATACCAGCTTGTGTGGTTTCCATGATGGGAAACCATCCAGTCCCTGCTGGTGTGACGGTAGGAATGGGCTTGTCCATCGTTCCCGGGAACTCAGACAGGTGGACCTGACCTTTTATTCCTTGGGGGTTTCTCGTAGTCTTGGGACATCAGCCCAGTGCCTTGGAACCTTAACTCATCTGACTCTTAGAAAAATGCCCATGGCAAGATCATCATTCTGTATGACGATGATGAAAGGCTGGCCAGTCAGGCGGCCACCACCATGTGCGAGCGTGGATTTGAAAACCTCTTCATGCTTTCCGGAGGTGAGCAAGGTGATACTCTGCTTGGGACTTCAAAGGCTGATCATCCTTCAGTCCCACCTGCATCCCCTTTTCTCTCTTGGTGCTCAGAATTCAGTGTTCTGGAAAGAGAAAAAGCCATGCTGGCTGAAAGGAGTCAGGAGTTATGTGAAACTTCCCTTAGCTTCATCAGCACATGTTTTTAATTCCTGATGTTGCTTCAGGGCTCTGTCACAAAGCCCTAATGCTGAAGACTCGAGCAAAAGGATTTCTTGTGGAATTCTCAGAATCCCATGTAACAACAGATATTTTCTGGTATAATTTGCTTAATGATGAAATAGTTAAGAAAGATTTCATGTCCTTGTGTTGGCCTCAACTTGATGACCAGAGATTAGAAGACATGCAGGCTTCTTTCCAGGTTTTGGCCTGGCCTTGCCATATTAATGCAGCTTTTTCTGATGATTTTCCAAACCTAGGTCTAAAAGTCTTAGCTCAGAAATTCCCGGAAGGACTGATTACTGGTTCCCTGCCAGCATCTTGCCAGCAGGCCCTTCCTCCTGGGTCTGCCCGGAAACGATCCAGCCCCAAAGGGCCACCCCTACCAGCTGAGAATAAATGGAGATTTACCCCAGAAGACTTAAAAAAGATAGAATATTATCTGGAAGAGGAGCAAGGGCCTGCAGATCATCCTAGTAAGATCTTTTGACCTTTAAAGATAATGTTTGGTTTGCAGCTTTGAATATCACCTCATCATATGAAAACCTTCATCTCTTATATTTAGATTCTTAAAATACTAGGGAGGTATGTTACAGGTGCTGGGGAGGGGAGGCAGTGGAGGTGACCCCAGATAGTGGCAAGAATTACGCATTGAAGAGAGACTTTATCAAAACATAGCGACtttttttttttttgagacagagtcttgctctgtcacccaggctggaatgcaatgggatgatcttggctcactgcaacctccgtctccccggttcaagcgattctcccacatcagcctcccgagtaggtgggattacaggtgcccgccaccacaccaggctaatttttttgtattttaagtagagacagggtttcaccatgttggccaggctggtctcgaacttctggccacaagtgatccacccacctcagccttccaaagtgctaggattacaggcatgagccaccacgcccagGCAAAAATGTAGAGACTTCATCAAAAAGTATATCTCAGGTAAAATTGAGGAGTTAAGCATCAGACCTTCAGATTCCTTCTTGGAAAGTTTTCGATTCCTTCTGCAGCTTTTGCTTCTCCACTCTGAGAGCCTCTGTGGTTTGTCTTCCTACCTTAGTTTCACCGTACTGCTTTCTCTTTTCTTTCCCCAAATCACTCCTCGTCTGCATCCTCTCTACCAAGGAAGTAGTGGAGGACAGACTAGGTTTGTTGGGGATGTTGGAGAGGAAGGGAAAAAAAACCTATCTGGGTTTCCCTTCATTTCTGTCCCCCTCCCCACCTTCAGGCTGATCTCAAGGATGAGGAGTAGGCCATCGTTGGCCTAAAGTAGATACTGCATAGGACTTCATTAGCTTAAAAGTGGTTGTAGGCTAGGACTTCATTAGCTTAAAACTGTACTTGGCAGATTGTCCCTGGAATCATTCTTGCAGCTCTGTTCCTTCTTTCTTGCTCCCTTCAGGCCGACTGAACCAAGCTAACTCCTCCGGAAGAGAGTCCAAGGTGCCTGGTGCCCGAAGCGCTCAGAATCTGCCAGGTGGCGGCCCCGCCAGCCACTCAAACCCCCGCTCCCTCAGCAGTGGTCACCTGCAAGGCAAACCCTGGAAGTAAAGACTTTGTCTCACTTAGGCAAATAAATGTTCTTCCTCTTTTCAGAACC</dnaseq>|
 
sequence = <dnaseq>gatggctcccacatttttactgtcataaataggcttcagtggacaCATTAGGCATAGAAGTTGTtctatttcttcatctgtaaaatggggattgtaatatttactttccagggtcatagggataagagagctaaaggatgtaaagtccggaactagtgcTGTCTTTTAGATCATGGTAACATCAGTTTGCAAAAGAAACGAATACCAGCTTGTGTGGTTTCCATGATGGGAAACCATCCAGTCCCTGCTGGTGTGACGGTAGGAATGGGCTTGTCCATCGTTCCCGGGAACTCAGACAGGTGGACCTGACCTTTTATTCCTTGGGGGTTTCTCGTAGTCTTGGGACATCAGCCCAGTGCCTTGGAACCTTAACTCATCTGACTCTTAGAAAAATGCCCATGGCAAGATCATCATTCTGTATGACGATGATGAAAGGCTGGCCAGTCAGGCGGCCACCACCATGTGCGAGCGTGGATTTGAAAACCTCTTCATGCTTTCCGGAGGTGAGCAAGGTGATACTCTGCTTGGGACTTCAAAGGCTGATCATCCTTCAGTCCCACCTGCATCCCCTTTTCTCTCTTGGTGCTCAGAATTCAGTGTTCTGGAAAGAGAAAAAGCCATGCTGGCTGAAAGGAGTCAGGAGTTATGTGAAACTTCCCTTAGCTTCATCAGCACATGTTTTTAATTCCTGATGTTGCTTCAGGGCTCTGTCACAAAGCCCTAATGCTGAAGACTCGAGCAAAAGGATTTCTTGTGGAATTCTCAGAATCCCATGTAACAACAGATATTTTCTGGTATAATTTGCTTAATGATGAAATAGTTAAGAAAGATTTCATGTCCTTGTGTTGGCCTCAACTTGATGACCAGAGATTAGAAGACATGCAGGCTTCTTTCCAGGTTTTGGCCTGGCCTTGCCATATTAATGCAGCTTTTTCTGATGATTTTCCAAACCTAGGTCTAAAAGTCTTAGCTCAGAAATTCCCGGAAGGACTGATTACTGGTTCCCTGCCAGCATCTTGCCAGCAGGCCCTTCCTCCTGGGTCTGCCCGGAAACGATCCAGCCCCAAAGGGCCACCCCTACCAGCTGAGAATAAATGGAGATTTACCCCAGAAGACTTAAAAAAGATAGAATATTATCTGGAAGAGGAGCAAGGGCCTGCAGATCATCCTAGTAAGATCTTTTGACCTTTAAAGATAATGTTTGGTTTGCAGCTTTGAATATCACCTCATCATATGAAAACCTTCATCTCTTATATTTAGATTCTTAAAATACTAGGGAGGTATGTTACAGGTGCTGGGGAGGGGAGGCAGTGGAGGTGACCCCAGATAGTGGCAAGAATTACGCATTGAAGAGAGACTTTATCAAAACATAGCGACtttttttttttttgagacagagtcttgctctgtcacccaggctggaatgcaatgggatgatcttggctcactgcaacctccgtctccccggttcaagcgattctcccacatcagcctcccgagtaggtgggattacaggtgcccgccaccacaccaggctaatttttttgtattttaagtagagacagggtttcaccatgttggccaggctggtctcgaacttctggccacaagtgatccacccacctcagccttccaaagtgctaggattacaggcatgagccaccacgcccagGCAAAAATGTAGAGACTTCATCAAAAAGTATATCTCAGGTAAAATTGAGGAGTTAAGCATCAGACCTTCAGATTCCTTCTTGGAAAGTTTTCGATTCCTTCTGCAGCTTTTGCTTCTCCACTCTGAGAGCCTCTGTGGTTTGTCTTCCTACCTTAGTTTCACCGTACTGCTTTCTCTTTTCTTTCCCCAAATCACTCCTCGTCTGCATCCTCTCTACCAAGGAAGTAGTGGAGGACAGACTAGGTTTGTTGGGGATGTTGGAGAGGAAGGGAAAAAAAACCTATCTGGGTTTCCCTTCATTTCTGTCCCCCTCCCCACCTTCAGGCTGATCTCAAGGATGAGGAGTAGGCCATCGTTGGCCTAAAGTAGATACTGCATAGGACTTCATTAGCTTAAAAGTGGTTGTAGGCTAGGACTTCATTAGCTTAAAACTGTACTTGGCAGATTGTCCCTGGAATCATTCTTGCAGCTCTGTTCCTTCTTTCTTGCTCCCTTCAGGCCGACTGAACCAAGCTAACTCCTCCGGAAGAGAGTCCAAGGTGCCTGGTGCCCGAAGCGCTCAGAATCTGCCAGGTGGCGGCCCCGCCAGCCACTCAAACCCCCGCTCCCTCAGCAGTGGTCACCTGCAAGGCAAACCCTGGAAGTAAAGACTTTGTCTCACTTAGGCAAATAAATGTTCTTCCTCTTTTCAGAACC</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG048802]]

Revision as of 08:13, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT123343

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2368 nt

Genomic location

chr7-:130038683..130041050

Exon number

1

Exons

130038683..130041050

Genome context

Sequence
000001 gatggctccc acatttttac tgtcataaat aggcttcagt ggacaCATTA GGCATAGAAG TTGTtctatt tcttcatctg 000080
000081 taaaatgggg attgtaatat ttactttcca gggtcatagg gataagagag ctaaaggatg taaagtccgg aactagtgcT 000160
000161 GTCTTTTAGA TCATGGTAAC ATCAGTTTGC AAAAGAAACG AATACCAGCT TGTGTGGTTT CCATGATGGG AAACCATCCA 000240
000241 GTCCCTGCTG GTGTGACGGT AGGAATGGGC TTGTCCATCG TTCCCGGGAA CTCAGACAGG TGGACCTGAC CTTTTATTCC 000320
000321 TTGGGGGTTT CTCGTAGTCT TGGGACATCA GCCCAGTGCC TTGGAACCTT AACTCATCTG ACTCTTAGAA AAATGCCCAT 000400
000401 GGCAAGATCA TCATTCTGTA TGACGATGAT GAAAGGCTGG CCAGTCAGGC GGCCACCACC ATGTGCGAGC GTGGATTTGA 000480
000481 AAACCTCTTC ATGCTTTCCG GAGGTGAGCA AGGTGATACT CTGCTTGGGA CTTCAAAGGC TGATCATCCT TCAGTCCCAC 000560
000561 CTGCATCCCC TTTTCTCTCT TGGTGCTCAG AATTCAGTGT TCTGGAAAGA GAAAAAGCCA TGCTGGCTGA AAGGAGTCAG 000640
000641 GAGTTATGTG AAACTTCCCT TAGCTTCATC AGCACATGTT TTTAATTCCT GATGTTGCTT CAGGGCTCTG TCACAAAGCC 000720
000721 CTAATGCTGA AGACTCGAGC AAAAGGATTT CTTGTGGAAT TCTCAGAATC CCATGTAACA ACAGATATTT TCTGGTATAA 000800
000801 TTTGCTTAAT GATGAAATAG TTAAGAAAGA TTTCATGTCC TTGTGTTGGC CTCAACTTGA TGACCAGAGA TTAGAAGACA 000880
000881 TGCAGGCTTC TTTCCAGGTT TTGGCCTGGC CTTGCCATAT TAATGCAGCT TTTTCTGATG ATTTTCCAAA CCTAGGTCTA 000960
000961 AAAGTCTTAG CTCAGAAATT CCCGGAAGGA CTGATTACTG GTTCCCTGCC AGCATCTTGC CAGCAGGCCC TTCCTCCTGG 001040
001041 GTCTGCCCGG AAACGATCCA GCCCCAAAGG GCCACCCCTA CCAGCTGAGA ATAAATGGAG ATTTACCCCA GAAGACTTAA 001120
001121 AAAAGATAGA ATATTATCTG GAAGAGGAGC AAGGGCCTGC AGATCATCCT AGTAAGATCT TTTGACCTTT AAAGATAATG 001200
001201 TTTGGTTTGC AGCTTTGAAT ATCACCTCAT CATATGAAAA CCTTCATCTC TTATATTTAG ATTCTTAAAA TACTAGGGAG 001280
001281 GTATGTTACA GGTGCTGGGG AGGGGAGGCA GTGGAGGTGA CCCCAGATAG TGGCAAGAAT TACGCATTGA AGAGAGACTT 001360
001361 TATCAAAACA TAGCGACttt tttttttttt gagacagagt cttgctctgt cacccaggct ggaatgcaat gggatgatct 001440
001441 tggctcactg caacctccgt ctccccggtt caagcgattc tcccacatca gcctcccgag taggtgggat tacaggtgcc 001520
001521 cgccaccaca ccaggctaat ttttttgtat tttaagtaga gacagggttt caccatgttg gccaggctgg tctcgaactt 001600
001601 ctggccacaa gtgatccacc cacctcagcc ttccaaagtg ctaggattac aggcatgagc caccacgccc agGCAAAAAT 001680
001681 GTAGAGACTT CATCAAAAAG TATATCTCAG GTAAAATTGA GGAGTTAAGC ATCAGACCTT CAGATTCCTT CTTGGAAAGT 001760
001761 TTTCGATTCC TTCTGCAGCT TTTGCTTCTC CACTCTGAGA GCCTCTGTGG TTTGTCTTCC TACCTTAGTT TCACCGTACT 001840
001841 GCTTTCTCTT TTCTTTCCCC AAATCACTCC TCGTCTGCAT CCTCTCTACC AAGGAAGTAG TGGAGGACAG ACTAGGTTTG 001920
001921 TTGGGGATGT TGGAGAGGAA GGGAAAAAAA ACCTATCTGG GTTTCCCTTC ATTTCTGTCC CCCTCCCCAC CTTCAGGCTG 002000
002001 ATCTCAAGGA TGAGGAGTAG GCCATCGTTG GCCTAAAGTA GATACTGCAT AGGACTTCAT TAGCTTAAAA GTGGTTGTAG 002080
002081 GCTAGGACTT CATTAGCTTA AAACTGTACT TGGCAGATTG TCCCTGGAAT CATTCTTGCA GCTCTGTTCC TTCTTTCTTG 002160
002161 CTCCCTTCAG GCCGACTGAA CCAAGCTAAC TCCTCCGGAA GAGAGTCCAA GGTGCCTGGT GCCCGAAGCG CTCAGAATCT 002240
002241 GCCAGGTGGC GGCCCCGCCA GCCACTCAAA CCCCCGCTCC CTCAGCAGTG GTCACCTGCA AGGCAAACCC TGGAAGTAAA 002320
002321 GACTTTGTCT CACTTAGGCA AATAAATGTT CTTCCTCTTT TCAGAACC
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Predicted Small Protein

Name NONHSAT123343_smProtein_392:691
Length 100
Molecular weight 11133.2709
Aromaticity 0.0909090909091
Instability index 65.2535353535
Isoelectric point 9.98504638672
Runs 13
Runs residual 0.00237670825906
Runs probability 0.0339910045792
Amino acid sequence MPMARSSFCMTMMKGWPVRRPPPCASVDLKTSSCFPEVSKVILCLGLQRLIILQSHLHPL
FSLGAQNSVFWKEKKPCWLKGVRSYVKLPLASSAHVFNS
Secondary structure LLLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLHH
HLLLLLLEEEELLLLLLEELLLLEEEELLLLLLLLLLLL
PRMN -
PiMo -