Difference between revisions of "NONHSAT129967"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>AAAATGGGCTTCAGAGTCTGATGGATctgggtgactgggcaagttctttagcttgtcaaaccttcatttctctaatttataacataaggacagtaccttcttcctgtcaaggttgaggcaagcattagtgagaaacgtctcaaggcctggttcacaGTTAAAGGTCAAAAAAGAGAGAAAACATCACTGTTCTCTTCAGCAGAACTTTTGTCAGTGTGATCGAGAATTGTCTCAAGTGACAAGTGAGCTGACCAGGggaaccctgggtggcaggtactattggcaccattttccagataaagaaaatgaagttctaagcagtcaaatgacatgtcaagatcacccaactgggaaaaggtgcttttacatgaaagatggtgattagctgatcttttaccagaaggagaagaGATATGAAAGGCAAGATTCAAGGATCACACCAACTAGAGgagactactgcccttcattgattgatgtccggtgcctggaaagccatggttttatgcagtttgtggattttttattttttttctttatttgaaatgggaagGGATCACATTACATCGAACAGAAACTGTTTTACCTTGCTTGCAAGGAGGTGGAGGCCTCCTTGCCCCCAAGTGTGGTGCCACTTCCGGGTTCCTTGAGCACTTCCAGGTTATCAGCCCAGCTCTCCTCCAGTTTCTGGGGCTGCTGAAGAAGCTGTTGGGG</dnaseq>|
 
sequence = <dnaseq>AAAATGGGCTTCAGAGTCTGATGGATctgggtgactgggcaagttctttagcttgtcaaaccttcatttctctaatttataacataaggacagtaccttcttcctgtcaaggttgaggcaagcattagtgagaaacgtctcaaggcctggttcacaGTTAAAGGTCAAAAAAGAGAGAAAACATCACTGTTCTCTTCAGCAGAACTTTTGTCAGTGTGATCGAGAATTGTCTCAAGTGACAAGTGAGCTGACCAGGggaaccctgggtggcaggtactattggcaccattttccagataaagaaaatgaagttctaagcagtcaaatgacatgtcaagatcacccaactgggaaaaggtgcttttacatgaaagatggtgattagctgatcttttaccagaaggagaagaGATATGAAAGGCAAGATTCAAGGATCACACCAACTAGAGgagactactgcccttcattgattgatgtccggtgcctggaaagccatggttttatgcagtttgtggattttttattttttttctttatttgaaatgggaagGGATCACATTACATCGAACAGAAACTGTTTTACCTTGCTTGCAAGGAGGTGGAGGCCTCCTTGCCCCCAAGTGTGGTGCCACTTCCGGGTTCCTTGAGCACTTCCAGGTTATCAGCCCAGCTCTCCTCCAGTTTCTGGGGCTGCTGAAGAAGCTGTTGGGG</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:NONHSAG051629]]

Revision as of 10:59, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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You can also add sub-section(s) at will.

Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT129967

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

711 nt

Genomic location

chr9+:1298276..1328584

Exon number

7

Exons

1298276..1298431,1299313..1299412,1310939..1311032,1312840..1312899,1321456..1321494,1327073..1327173,1328424..1328584

Genome context

Sequence
000001 AAAATGGGCT TCAGAGTCTG ATGGATctgg gtgactgggc aagttcttta gcttgtcaaa ccttcatttc tctaatttat 000080
000081 aacataagga cagtaccttc ttcctgtcaa ggttgaggca agcattagtg agaaacgtct caaggcctgg ttcacaGTTA 000160
000161 AAGGTCAAAA AAGAGAGAAA ACATCACTGT TCTCTTCAGC AGAACTTTTG TCAGTGTGAT CGAGAATTGT CTCAAGTGAC 000240
000241 AAGTGAGCTG ACCAGGggaa ccctgggtgg caggtactat tggcaccatt ttccagataa agaaaatgaa gttctaagca 000320
000321 gtcaaatgac atgtcaagat cacccaactg ggaaaaggtg cttttacatg aaagatggtg attagctgat cttttaccag 000400
000401 aaggagaaga GATATGAAAG GCAAGATTCA AGGATCACAC CAACTAGAGg agactactgc ccttcattga ttgatgtccg 000480
000481 gtgcctggaa agccatggtt ttatgcagtt tgtggatttt ttattttttt tctttatttg aaatgggaag GGATCACATT 000560
000561 ACATCGAACA GAAACTGTTT TACCTTGCTT GCAAGGAGGT GGAGGCCTCC TTGCCCCCAA GTGTGGTGCC ACTTCCGGGT 000640
000641 TCCTTGAGCA CTTCCAGGTT ATCAGCCCAG CTCTCCTCCA GTTTCTGGGG CTGCTGAAGA AGCTGTTGGG G
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Predicted Small Protein

Name NONHSAT129967_smProtein_473:646
Length 58
Molecular weight 6911.1417
Aromaticity 0.19298245614
Instability index 73.5335087719
Isoelectric point 9.68743896484
Runs 7
Runs residual 0.0311403508772
Runs probability 0.0425719837485
Amino acid sequence MSGAWKAMVLCSLWIFYFFSLFEMGRDHITSNRNCFTLLARRWRPPCPQVWCHFRVP
Secondary structure LLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHLLLLLLEEEEEELL
PRMN -
PiMo -