Difference between revisions of "NONHSAT131229"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>attgtccttcttaatctgtataccttttcttttcttgtcttgtctgtttgcattagcttggtctgctggTTGGAAACCCAACTCACCATTAAATTGCAGTGTCTTAAATTGTACTCTCTTTGCATACTGATTTATCCTCTGGTACTCAGCTAATTGTTTTTGCCATCGAGGAGATCAACAGGGGCCCGCTGCTCTTACTCAACATGTCTTTGGGGTATCACGTCTACAATGCCTGCAACACTGATCAGAGGACTTTGGAGGGCCCTCTGTTTTGGCTGTCAGGAGGGGCCGAGAACCTTCCCAATTATACATGTCCATTTGATCCTTTGCCTAGTGATGAAGGACAGTTTCCATCTCTGTATCAGATGGTCCCAAGGAATCATCTTTGCCTCTTGGCATGGTGAAGCTGTTGCAGCATTTTAGCTAGACCTGGTAGGGCTGCTTGTCTCAGATGACATAAAAGGTGGGCATTTTGTTACCACCTCCCAGTGGGACTTTATCACACATGGGGGAAGTTTCATACTTAATCCATTCCATGGGACTCTCACTTTTTCAAAGCAGAACAGTGAGATGCCTGGCTTCCAGCATTTTGTTCAGACAGAATGTGCAAAATGTCCAGACAACCAGTATTCAGTGAGAGAGATCACTGCCTCACAGAGTTGTGACCTTCCTGGATTTTGAAGATGCACTGGGGACAGCACTGGCCAGCATAGCTCTCTGTTTCTCTGTCCTCACTGCCATGGTTCTTATGATCTTTGTGAAGCACATACACACACTCATAGTCAAGACTCTCAGCGACATTTCTCTGTCTGTTTTCTTCTGCTCCTTGCTCTTCACTGGCTGTACAAACACAGTCACTTGTATCCTCTGACAGACAACATTTGGAATCATTTTTACTGTGGTTGTTTCAACTGCGTTAGCTAAAACTATCACTGTGCTTATAGCCTGTAAGGCTACAGCATCAGAGAGAAAGCCAAAGTGGTTTTGGGGACTGGGAGTATTTAGCACAGTTATTTTCATCTGTTTCCTTATCCAAGTAACTCTCTGGAATTTGGCATGGGATCAAAGAGTGCCATCAGGACTCTCAATGATGAGGTATTCTTTGCCTTCCACTCTGTTCTGGGATTCTTGACCTTTTTGGCACTGGGGAGCTTCATCTTGGCTTTCCTGGCCAGCAGCCTGCCTGACACCTTCAATGAAGCCAAGTTCTTGATGTTCAGCATGCTGATGTTATGTACTGTTTGAATTACCTTCCAAACTGTGTAACATAGCACCAAAGGGAAGGTCATGGTTGCCTTGGAAATATTCTCCACCTTGACTTCCAGTGCTGAGTGCTAGGCGGTATCTTTGCTCCCAGAGGCCGTATTATTCTAATAAAACCAGGTAAGAATACTCTTGGAGAGTTAAGGGAAAAAAGCAAGT</dnaseq>| | sequence = <dnaseq>attgtccttcttaatctgtataccttttcttttcttgtcttgtctgtttgcattagcttggtctgctggTTGGAAACCCAACTCACCATTAAATTGCAGTGTCTTAAATTGTACTCTCTTTGCATACTGATTTATCCTCTGGTACTCAGCTAATTGTTTTTGCCATCGAGGAGATCAACAGGGGCCCGCTGCTCTTACTCAACATGTCTTTGGGGTATCACGTCTACAATGCCTGCAACACTGATCAGAGGACTTTGGAGGGCCCTCTGTTTTGGCTGTCAGGAGGGGCCGAGAACCTTCCCAATTATACATGTCCATTTGATCCTTTGCCTAGTGATGAAGGACAGTTTCCATCTCTGTATCAGATGGTCCCAAGGAATCATCTTTGCCTCTTGGCATGGTGAAGCTGTTGCAGCATTTTAGCTAGACCTGGTAGGGCTGCTTGTCTCAGATGACATAAAAGGTGGGCATTTTGTTACCACCTCCCAGTGGGACTTTATCACACATGGGGGAAGTTTCATACTTAATCCATTCCATGGGACTCTCACTTTTTCAAAGCAGAACAGTGAGATGCCTGGCTTCCAGCATTTTGTTCAGACAGAATGTGCAAAATGTCCAGACAACCAGTATTCAGTGAGAGAGATCACTGCCTCACAGAGTTGTGACCTTCCTGGATTTTGAAGATGCACTGGGGACAGCACTGGCCAGCATAGCTCTCTGTTTCTCTGTCCTCACTGCCATGGTTCTTATGATCTTTGTGAAGCACATACACACACTCATAGTCAAGACTCTCAGCGACATTTCTCTGTCTGTTTTCTTCTGCTCCTTGCTCTTCACTGGCTGTACAAACACAGTCACTTGTATCCTCTGACAGACAACATTTGGAATCATTTTTACTGTGGTTGTTTCAACTGCGTTAGCTAAAACTATCACTGTGCTTATAGCCTGTAAGGCTACAGCATCAGAGAGAAAGCCAAAGTGGTTTTGGGGACTGGGAGTATTTAGCACAGTTATTTTCATCTGTTTCCTTATCCAAGTAACTCTCTGGAATTTGGCATGGGATCAAAGAGTGCCATCAGGACTCTCAATGATGAGGTATTCTTTGCCTTCCACTCTGTTCTGGGATTCTTGACCTTTTTGGCACTGGGGAGCTTCATCTTGGCTTTCCTGGCCAGCAGCCTGCCTGACACCTTCAATGAAGCCAAGTTCTTGATGTTCAGCATGCTGATGTTATGTACTGTTTGAATTACCTTCCAAACTGTGTAACATAGCACCAAAGGGAAGGTCATGGTTGCCTTGGAAATATTCTCCACCTTGACTTCCAGTGCTGAGTGCTAGGCGGTATCTTTGCTCCCAGAGGCCGTATTATTCTAATAAAACCAGGTAAGAATACTCTTGGAGAGTTAAGGGAAAAAAGCAAGT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG052231]] |
Revision as of 11:29, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT131229 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1422 nt |
| Genomic location |
chr9-:40063116..40085739 |
| Exon number |
7 |
| Exons |
40063116..40063798,40064155..40064293,40073743..40073868,40074394..40074553,40075897..40076055,40076187..40076272,40085671..40085739 |
| Genome context |
|
| Sequence |
000001 attgtccttc ttaatctgta taccttttct tttcttgtct tgtctgtttg cattagcttg gtctgctggT TGGAAACCCA 000080
000081 ACTCACCATT AAATTGCAGT GTCTTAAATT GTACTCTCTT TGCATACTGA TTTATCCTCT GGTACTCAGC TAATTGTTTT 000160 000161 TGCCATCGAG GAGATCAACA GGGGCCCGCT GCTCTTACTC AACATGTCTT TGGGGTATCA CGTCTACAAT GCCTGCAACA 000240 000241 CTGATCAGAG GACTTTGGAG GGCCCTCTGT TTTGGCTGTC AGGAGGGGCC GAGAACCTTC CCAATTATAC ATGTCCATTT 000320 000321 GATCCTTTGC CTAGTGATGA AGGACAGTTT CCATCTCTGT ATCAGATGGT CCCAAGGAAT CATCTTTGCC TCTTGGCATG 000400 000401 GTGAAGCTGT TGCAGCATTT TAGCTAGACC TGGTAGGGCT GCTTGTCTCA GATGACATAA AAGGTGGGCA TTTTGTTACC 000480 000481 ACCTCCCAGT GGGACTTTAT CACACATGGG GGAAGTTTCA TACTTAATCC ATTCCATGGG ACTCTCACTT TTTCAAAGCA 000560 000561 GAACAGTGAG ATGCCTGGCT TCCAGCATTT TGTTCAGACA GAATGTGCAA AATGTCCAGA CAACCAGTAT TCAGTGAGAG 000640 000641 AGATCACTGC CTCACAGAGT TGTGACCTTC CTGGATTTTG AAGATGCACT GGGGACAGCA CTGGCCAGCA TAGCTCTCTG 000720 000721 TTTCTCTGTC CTCACTGCCA TGGTTCTTAT GATCTTTGTG AAGCACATAC ACACACTCAT AGTCAAGACT CTCAGCGACA 000800 000801 TTTCTCTGTC TGTTTTCTTC TGCTCCTTGC TCTTCACTGG CTGTACAAAC ACAGTCACTT GTATCCTCTG ACAGACAACA 000880 000881 TTTGGAATCA TTTTTACTGT GGTTGTTTCA ACTGCGTTAG CTAAAACTAT CACTGTGCTT ATAGCCTGTA AGGCTACAGC 000960 000961 ATCAGAGAGA AAGCCAAAGT GGTTTTGGGG ACTGGGAGTA TTTAGCACAG TTATTTTCAT CTGTTTCCTT ATCCAAGTAA 001040 001041 CTCTCTGGAA TTTGGCATGG GATCAAAGAG TGCCATCAGG ACTCTCAATG ATGAGGTATT CTTTGCCTTC CACTCTGTTC 001120 001121 TGGGATTCTT GACCTTTTTG GCACTGGGGA GCTTCATCTT GGCTTTCCTG GCCAGCAGCC TGCCTGACAC CTTCAATGAA 001200 001201 GCCAAGTTCT TGATGTTCAG CATGCTGATG TTATGTACTG TTTGAATTAC CTTCCAAACT GTGTAACATA GCACCAAAGG 001280 001281 GAAGGTCATG GTTGCCTTGG AAATATTCTC CACCTTGACT TCCAGTGCTG AGTGCTAGGC GGTATCTTTG CTCCCAGAGG 001360 001361 CCGTATTATT CTAATAAAAC CAGGTAAGAA TACTCTTGGA GAGTTAAGGG AAAAAAGCAA GT |
Predicted Small Protein
| Name | NONHSAT131229_smProtein_203:403 |
| Length | 67 |
| Molecular weight | 7490.3803 |
| Aromaticity | 0.136363636364 |
| Instability index | 50.203030303 |
| Isoelectric point | 4.56951904297 |
| Runs | 9 |
| Runs residual | 0.0142442387951 |
| Runs probability | 0.0257904963788 |
| Amino acid sequence | MSLGYHVYNACNTDQRTLEGPLFWLSGGAENLPNYTCPFDPLPSDEGQFPSLYQMVPRNH LCLLAW |
| Secondary structure | LLLLEEEELLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLL EEEEEL |
| PRMN | - |
| PiMo | - |
