Difference between revisions of "NONHSAT131269"

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sequence = <dnaseq>CTTGTCCCAACCGTACAGATGAGAAAGCTGAGACTCAGGGCCAGCAACCCGGGTCCCAGCGGAGCGCCCGGCACACGCCGACACTTCAGCACCAGTGGCGGTGGCCACCACTGTGGGCGGAGATGGCTGCGACGCGTGCGCAGGTAAAGTCTATGCGCGCCTTGCCTCCCACCGGCGCCTTCCCCGGCCTCTGGTTTTTGTCCCCGCCAGCGGCTCCGACTCCATCCAGATCTCGATCCCAAACTCCCTCCTGCCAGAATCTGGACCCGAATCCACCCATTGCCCGTTTTCCGCTGCCGCTGGAGAGAATCTCTGAGGTCCCCAGGAGAGCCTGCCTGCACGGAAGAGACGCCTCCTCGATTAAATGCTGTTTTCCATGACCGTCTCTGTTCTTCCCATACGGGAATGTGGGATTGTTGTTAATGTAATTAGTTAAGATGAGGTCATGCTGTAATAGGGTGGGCCCCCTAATCCAATATGATTTGTGTCTTTATAAAAAAGGGAAATTTGTGCACAGAGATAACACAGGGGATATGCCATATGAAGATGAA</dnaseq>|
 
sequence = <dnaseq>CTTGTCCCAACCGTACAGATGAGAAAGCTGAGACTCAGGGCCAGCAACCCGGGTCCCAGCGGAGCGCCCGGCACACGCCGACACTTCAGCACCAGTGGCGGTGGCCACCACTGTGGGCGGAGATGGCTGCGACGCGTGCGCAGGTAAAGTCTATGCGCGCCTTGCCTCCCACCGGCGCCTTCCCCGGCCTCTGGTTTTTGTCCCCGCCAGCGGCTCCGACTCCATCCAGATCTCGATCCCAAACTCCCTCCTGCCAGAATCTGGACCCGAATCCACCCATTGCCCGTTTTCCGCTGCCGCTGGAGAGAATCTCTGAGGTCCCCAGGAGAGCCTGCCTGCACGGAAGAGACGCCTCCTCGATTAAATGCTGTTTTCCATGACCGTCTCTGTTCTTCCCATACGGGAATGTGGGATTGTTGTTAATGTAATTAGTTAAGATGAGGTCATGCTGTAATAGGGTGGGCCCCCTAATCCAATATGATTTGTGTCTTTATAAAAAAGGGAAATTTGTGCACAGAGATAACACAGGGGATATGCCATATGAAGATGAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG052261]]

Revision as of 11:31, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT131269

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

551 nt

Genomic location

chr9-:41948828..41954891

Exon number

4

Exons

41948828..41948970,41953731..41953779,41954504..41954636,41954666..41954891

Genome context

Sequence
000001 CTTGTCCCAA CCGTACAGAT GAGAAAGCTG AGACTCAGGG CCAGCAACCC GGGTCCCAGC GGAGCGCCCG GCACACGCCG 000080
000081 ACACTTCAGC ACCAGTGGCG GTGGCCACCA CTGTGGGCGG AGATGGCTGC GACGCGTGCG CAGGTAAAGT CTATGCGCGC 000160
000161 CTTGCCTCCC ACCGGCGCCT TCCCCGGCCT CTGGTTTTTG TCCCCGCCAG CGGCTCCGAC TCCATCCAGA TCTCGATCCC 000240
000241 AAACTCCCTC CTGCCAGAAT CTGGACCCGA ATCCACCCAT TGCCCGTTTT CCGCTGCCGC TGGAGAGAAT CTCTGAGGTC 000320
000321 CCCAGGAGAG CCTGCCTGCA CGGAAGAGAC GCCTCCTCGA TTAAATGCTG TTTTCCATGA CCGTCTCTGT TCTTCCCATA 000400
000401 CGGGAATGTG GGATTGTTGT TAATGTAATT AGTTAAGATG AGGTCATGCT GTAATAGGGT GGGCCCCCTA ATCCAATATG 000480
000481 ATTTGTGTCT TTATAAAAAA GGGAAATTTG TGCACAGAGA TAACACAGGG GATATGCCAT ATGAAGATGA A
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Predicted Small Protein

Name NONHSAT131269_smProtein_122:379
Length 86
Molecular weight 9224.645
Aromaticity 0.0588235294118
Instability index 79.9811764706
Isoelectric point 10.6895141602
Runs 9
Runs residual 0.0306595365419
Runs probability 0.0432000628078
Amino acid sequence MAATRAQVKSMRALPPTGAFPGLWFLSPPAAPTPSRSRSQTPSCQNLDPNPPIARFPLPL
ERISEVPRRACLHGRDASSIKCCFP
Secondary structure LLLHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH
HHHLLLLHHHHLLLLLLLLLEELLL
PRMN -
PiMo -