Difference between revisions of "NONHSAT131953"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AAGGCCTCTCTCCTTCACAGTGACTCCGTTCACATGCTCCCGTCTTGTCATCAAGCCCTGTTCATCTCTCACCATCTCTCACCTGGACCATTGCCAGTTTCTGAGCTGCCTGCTCTTGAATACCAGCttcctgaaaatatcaccaaaacgatctggtcctcagacaaagcagagtctattgctcactgcagtaacagagagctccgtcttcagagtcttggtaacatttcgctgagaggacaacccaatcacactgtttaggagattttggattctgactaaggtgagtctgacaatgtggggtcttggcaaataatcatgatgaaatagtttaagatgagaagacacagcaaagtaaggattttgaggcaaagggttcaaacaatcttagagtataaactgctttttattgatgtaactctgaagatgttcctggagtaaaaaaaggaagttatttgcaaattttacctccagggtgagagcttctggaataagaaatttctgctgatgaagatcgtaaaCTGTGTGGGTGTAGCTGGTTTTGCCTGTCACCTCCATGCCTCCTATCTCAAACTCTTCCACTTCGTTAGCAACAGCAACAATAATAACAATAGTTACAATATGAGTAGCAGCAAAtatttagctctcattaaatgccaagcactgtcctaagcattttacaaatactgtctcattaaagttcgccataatcctatggtattggcactatttttgtccacattatacaaatgtaaacactgaagcagcttagagaggacaagttatttgaccaagtcacacagTACCTTCCCACTGTCAGAGTTCTATCAGAAATGAAAATTTGATAATTGCACACTCTTGCATAAACTTTTTCAAAGATTCCCTGTTGCCTAAAACATAAAAATCTTGATTTCTTCAAATGGTACACAGAACACTCCATGATCTGGCCTCAGTCCCACCTCTCCAGTCTTCTTTATTGTATAGGTTGCTCTACCCATTCCTGGACCACACATGATGCTGTTTCACGTCTTCATGAATCGTGCTCATTTGGAGTTTTTACTCCTGGTATCTACTCATCATCCATCTAATAAAACAGTAGCCTGGGGAAACAGTCTCTTCCCTCACTTTCAGCCTGTTTGCATTGTCCCCACTTAATGTGAACTGAGAGTAAGAAGGTGCTGGGATTGTTGCACTCTCTTACAGGAAGCAGGAGAATTAACCAACACTGAGGAGAAATGGGGAGATACAAACTATCTCATGAGGCTGTCCTGCAAGCCCTGGAGCAAGCTGAGCCCAAGCCTGTTCATTTATATCATCCAATACATTTGATTGTTTAAGGGAGAGTGATTTTTTTTTTAAGCATTTCCATCGGAAaaggtcttcattcacactgcagtctgttagaacatatttcttcaggctttcagactagaacaccctcacctttcaacattcagctcagatatcaccacctccatgaggtttttttgtttttgtttttgtttttgagacagtctcgctccatcacctaggctggagtgcagtggtgcaatcttggctcactggaacttctgcctccagagttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcgcccaccatcacgcctgtataatttttgtatttGTGCCTGGAGCAAAAAtgtgtccagaattggtgggttgttggtctcgctgacctcaagaacggagccgtggaccctcgcggtaagtgttgtgtcccgagtttgttccttctgatgttcagatgtgtccagagtttcttccttctggggggttgctggtcttgctgacttcaggagtgaagctgcagaccttcgcagtgagtgggcggcgcatctggagttgttcgttccttccagtgggttcgtggtctcactggcctcaggagtgaaactgcagacctttgctgtgagtgttacagttcataaaggtggcacgtccagagttgttcgt</dnaseq>| | sequence = <dnaseq>AAGGCCTCTCTCCTTCACAGTGACTCCGTTCACATGCTCCCGTCTTGTCATCAAGCCCTGTTCATCTCTCACCATCTCTCACCTGGACCATTGCCAGTTTCTGAGCTGCCTGCTCTTGAATACCAGCttcctgaaaatatcaccaaaacgatctggtcctcagacaaagcagagtctattgctcactgcagtaacagagagctccgtcttcagagtcttggtaacatttcgctgagaggacaacccaatcacactgtttaggagattttggattctgactaaggtgagtctgacaatgtggggtcttggcaaataatcatgatgaaatagtttaagatgagaagacacagcaaagtaaggattttgaggcaaagggttcaaacaatcttagagtataaactgctttttattgatgtaactctgaagatgttcctggagtaaaaaaaggaagttatttgcaaattttacctccagggtgagagcttctggaataagaaatttctgctgatgaagatcgtaaaCTGTGTGGGTGTAGCTGGTTTTGCCTGTCACCTCCATGCCTCCTATCTCAAACTCTTCCACTTCGTTAGCAACAGCAACAATAATAACAATAGTTACAATATGAGTAGCAGCAAAtatttagctctcattaaatgccaagcactgtcctaagcattttacaaatactgtctcattaaagttcgccataatcctatggtattggcactatttttgtccacattatacaaatgtaaacactgaagcagcttagagaggacaagttatttgaccaagtcacacagTACCTTCCCACTGTCAGAGTTCTATCAGAAATGAAAATTTGATAATTGCACACTCTTGCATAAACTTTTTCAAAGATTCCCTGTTGCCTAAAACATAAAAATCTTGATTTCTTCAAATGGTACACAGAACACTCCATGATCTGGCCTCAGTCCCACCTCTCCAGTCTTCTTTATTGTATAGGTTGCTCTACCCATTCCTGGACCACACATGATGCTGTTTCACGTCTTCATGAATCGTGCTCATTTGGAGTTTTTACTCCTGGTATCTACTCATCATCCATCTAATAAAACAGTAGCCTGGGGAAACAGTCTCTTCCCTCACTTTCAGCCTGTTTGCATTGTCCCCACTTAATGTGAACTGAGAGTAAGAAGGTGCTGGGATTGTTGCACTCTCTTACAGGAAGCAGGAGAATTAACCAACACTGAGGAGAAATGGGGAGATACAAACTATCTCATGAGGCTGTCCTGCAAGCCCTGGAGCAAGCTGAGCCCAAGCCTGTTCATTTATATCATCCAATACATTTGATTGTTTAAGGGAGAGTGATTTTTTTTTTAAGCATTTCCATCGGAAaaggtcttcattcacactgcagtctgttagaacatatttcttcaggctttcagactagaacaccctcacctttcaacattcagctcagatatcaccacctccatgaggtttttttgtttttgtttttgtttttgagacagtctcgctccatcacctaggctggagtgcagtggtgcaatcttggctcactggaacttctgcctccagagttcaagagattctcctgcctcagcctcctgagtagctgggattacaggcgcccaccatcacgcctgtataatttttgtatttGTGCCTGGAGCAAAAAtgtgtccagaattggtgggttgttggtctcgctgacctcaagaacggagccgtggaccctcgcggtaagtgttgtgtcccgagtttgttccttctgatgttcagatgtgtccagagtttcttccttctggggggttgctggtcttgctgacttcaggagtgaagctgcagaccttcgcagtgagtgggcggcgcatctggagttgttcgttccttccagtgggttcgtggtctcactggcctcaggagtgaaactgcagacctttgctgtgagtgttacagttcataaaggtggcacgtccagagttgttcgt</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG052604]] |
Revision as of 11:47, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131953 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1994 nt |
Genomic location |
chr9+:79131410..79143060 |
Exon number |
2 |
Exons |
79131410..79133074,79142732..79143060 |
Genome context |
|
Sequence |
000001 AAGGCCTCTC TCCTTCACAG TGACTCCGTT CACATGCTCC CGTCTTGTCA TCAAGCCCTG TTCATCTCTC ACCATCTCTC 000080
000081 ACCTGGACCA TTGCCAGTTT CTGAGCTGCC TGCTCTTGAA TACCAGCttc ctgaaaatat caccaaaacg atctggtcct 000160 000161 cagacaaagc agagtctatt gctcactgca gtaacagaga gctccgtctt cagagtcttg gtaacatttc gctgagagga 000240 000241 caacccaatc acactgttta ggagattttg gattctgact aaggtgagtc tgacaatgtg gggtcttggc aaataatcat 000320 000321 gatgaaatag tttaagatga gaagacacag caaagtaagg attttgaggc aaagggttca aacaatctta gagtataaac 000400 000401 tgctttttat tgatgtaact ctgaagatgt tcctggagta aaaaaaggaa gttatttgca aattttacct ccagggtgag 000480 000481 agcttctgga ataagaaatt tctgctgatg aagatcgtaa aCTGTGTGGG TGTAGCTGGT TTTGCCTGTC ACCTCCATGC 000560 000561 CTCCTATCTC AAACTCTTCC ACTTCGTTAG CAACAGCAAC AATAATAACA ATAGTTACAA TATGAGTAGC AGCAAAtatt 000640 000641 tagctctcat taaatgccaa gcactgtcct aagcatttta caaatactgt ctcattaaag ttcgccataa tcctatggta 000720 000721 ttggcactat ttttgtccac attatacaaa tgtaaacact gaagcagctt agagaggaca agttatttga ccaagtcaca 000800 000801 cagTACCTTC CCACTGTCAG AGTTCTATCA GAAATGAAAA TTTGATAATT GCACACTCTT GCATAAACTT TTTCAAAGAT 000880 000881 TCCCTGTTGC CTAAAACATA AAAATCTTGA TTTCTTCAAA TGGTACACAG AACACTCCAT GATCTGGCCT CAGTCCCACC 000960 000961 TCTCCAGTCT TCTTTATTGT ATAGGTTGCT CTACCCATTC CTGGACCACA CATGATGCTG TTTCACGTCT TCATGAATCG 001040 001041 TGCTCATTTG GAGTTTTTAC TCCTGGTATC TACTCATCAT CCATCTAATA AAACAGTAGC CTGGGGAAAC AGTCTCTTCC 001120 001121 CTCACTTTCA GCCTGTTTGC ATTGTCCCCA CTTAATGTGA ACTGAGAGTA AGAAGGTGCT GGGATTGTTG CACTCTCTTA 001200 001201 CAGGAAGCAG GAGAATTAAC CAACACTGAG GAGAAATGGG GAGATACAAA CTATCTCATG AGGCTGTCCT GCAAGCCCTG 001280 001281 GAGCAAGCTG AGCCCAAGCC TGTTCATTTA TATCATCCAA TACATTTGAT TGTTTAAGGG AGAGTGATTT TTTTTTTAAG 001360 001361 CATTTCCATC GGAAaaggtc ttcattcaca ctgcagtctg ttagaacata tttcttcagg ctttcagact agaacaccct 001440 001441 cacctttcaa cattcagctc agatatcacc acctccatga ggtttttttg tttttgtttt tgtttttgag acagtctcgc 001520 001521 tccatcacct aggctggagt gcagtggtgc aatcttggct cactggaact tctgcctcca gagttcaaga gattctcctg 001600 001601 cctcagcctc ctgagtagct gggattacag gcgcccacca tcacgcctgt ataatttttg tatttGTGCC TGGAGCAAAA 001680 001681 Atgtgtccag aattggtggg ttgttggtct cgctgacctc aagaacggag ccgtggaccc tcgcggtaag tgttgtgtcc 001760 001761 cgagtttgtt ccttctgatg ttcagatgtg tccagagttt cttccttctg gggggttgct ggtcttgctg acttcaggag 001840 001841 tgaagctgca gaccttcgca gtgagtgggc ggcgcatctg gagttgttcg ttccttccag tgggttcgtg gtctcactgg 001920 001921 cctcaggagt gaaactgcag acctttgctg tgagtgttac agttcataaa ggtggcacgt ccagagttgt tcgt |
Predicted Small Protein
Name | NONHSAT131953_smProtein_938:1087 |
Length | 50 |
Molecular weight | 5431.0782 |
Aromaticity | 0.122448979592 |
Instability index | 44.2 |
Isoelectric point | 6.36077880859 |
Runs | 10 |
Runs residual | 0.0420297848869 |
Runs probability | 0.0449478890656 |
Amino acid sequence | MIWPQSHLSSLLYCIGCSTHSWTTHDAVSRLHESCSFGVFTPGIYSSSI |
Secondary structure | LLLLLLLHHHHEEEELLLLLLLLHHHHHHHHHHLLLLLEELLLEEELLL |
PRMN | - |
PiMo | - |