Difference between revisions of "NONHSAT133190"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>AGATAAGAAAAAATGACAGAGTATGCCCATGAAGCCACGAGATTTCTGGATAAAACAACTGAGTCCCCCCACATGAGCTGGAGCAGAAGGCAGCACAGAAAAAGATACCAATTGTGGAAAAAGTGACCAACTATGAGAGTGAGGTTGGGAAAGGTGGAGAGAAATCAGTTAAGGAAAAATTCCAGATGTTGTCTAAGGAGACAATGAAGATATTCCTCCTTCAGGGACACTGAATACATTAAGGCAATAGAAAGATTTTGGGAATACAGAGTTAGGTAAGATAATCTGTTTCTGTTTTTACGATGTTTATTAGCTTTTTCATTATAAAGGTAATACTCATTGCTCATTATGAAAGTTAAAGGAAAAAGGAAAACACAAGTCATCTATGGTTCTAGTGCCCAGAGTTTATCATCAATCAGGTATATTCCTGCCAGGTTTGTTTTTGTTTGTTTATGAGTGTTTGTAAGTATACAGTTTATGGATTTTTTATATTTGCTTTTTTTTATTTCACAAAAGATAATATCCCATATTTAAAAGTGTCTTTGCAAGCATTTTGTGGGTTCCAAAATATTTCATGGAATAAATATACTCTTTTATTTTACTATTCCCCTTTAACCATTATATAATTGTCTCAAATATTTCTGCTATTATAATTCTGTGATGAACATCTTTGTGCACTTTAGAAATGTTT</dnaseq>| | sequence = <dnaseq>AGATAAGAAAAAATGACAGAGTATGCCCATGAAGCCACGAGATTTCTGGATAAAACAACTGAGTCCCCCCACATGAGCTGGAGCAGAAGGCAGCACAGAAAAAGATACCAATTGTGGAAAAAGTGACCAACTATGAGAGTGAGGTTGGGAAAGGTGGAGAGAAATCAGTTAAGGAAAAATTCCAGATGTTGTCTAAGGAGACAATGAAGATATTCCTCCTTCAGGGACACTGAATACATTAAGGCAATAGAAAGATTTTGGGAATACAGAGTTAGGTAAGATAATCTGTTTCTGTTTTTACGATGTTTATTAGCTTTTTCATTATAAAGGTAATACTCATTGCTCATTATGAAAGTTAAAGGAAAAAGGAAAACACAAGTCATCTATGGTTCTAGTGCCCAGAGTTTATCATCAATCAGGTATATTCCTGCCAGGTTTGTTTTTGTTTGTTTATGAGTGTTTGTAAGTATACAGTTTATGGATTTTTTATATTTGCTTTTTTTTATTTCACAAAAGATAATATCCCATATTTAAAAGTGTCTTTGCAAGCATTTTGTGGGTTCCAAAATATTTCATGGAATAAATATACTCTTTTATTTTACTATTCCCCTTTAACCATTATATAATTGTCTCAAATATTTCTGCTATTATAATTCTGTGATGAACATCTTTGTGCACTTTAGAAATGTTT</dnaseq>| | ||
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| − | [[Category:Intronic(AS)]] | + | [[Category:Intronic(AS)]][[Category:Transcripts]] |
Latest revision as of 02:29, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT133190 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
691 nt |
| Genomic location |
chr9-:95237435..95239224 |
| Exon number |
2 |
| Exons |
95237435..95238025,95239125..95239224 |
| Genome context |
|
| Sequence |
000001 AGATAAGAAA AAATGACAGA GTATGCCCAT GAAGCCACGA GATTTCTGGA TAAAACAACT GAGTCCCCCC ACATGAGCTG 000080
000081 GAGCAGAAGG CAGCACAGAA AAAGATACCA ATTGTGGAAA AAGTGACCAA CTATGAGAGT GAGGTTGGGA AAGGTGGAGA 000160 000161 GAAATCAGTT AAGGAAAAAT TCCAGATGTT GTCTAAGGAG ACAATGAAGA TATTCCTCCT TCAGGGACAC TGAATACATT 000240 000241 AAGGCAATAG AAAGATTTTG GGAATACAGA GTTAGGTAAG ATAATCTGTT TCTGTTTTTA CGATGTTTAT TAGCTTTTTC 000320 000321 ATTATAAAGG TAATACTCAT TGCTCATTAT GAAAGTTAAA GGAAAAAGGA AAACACAAGT CATCTATGGT TCTAGTGCCC 000400 000401 AGAGTTTATC ATCAATCAGG TATATTCCTG CCAGGTTTGT TTTTGTTTGT TTATGAGTGT TTGTAAGTAT ACAGTTTATG 000480 000481 GATTTTTTAT ATTTGCTTTT TTTTATTTCA CAAAAGATAA TATCCCATAT TTAAAAGTGT CTTTGCAAGC ATTTTGTGGG 000560 000561 TTCCAAAATA TTTCATGGAA TAAATATACT CTTTTATTTT ACTATTCCCC TTTAACCATT ATATAATTGT CTCAAATATT 000640 000641 TCTGCTATTA TAATTCTGTG ATGAACATCT TTGTGCACTT TAGAAATGTT T |
Predicted Small Protein
| Name | NONHSAT133190_smProtein_452:625 |
| Length | 58 |
| Molecular weight | 6867.009 |
| Aromaticity | 0.298245614035 |
| Instability index | 57.0266666667 |
| Isoelectric point | 9.00299072266 |
| Runs | 14 |
| Runs residual | 0.0916666666667 |
| Runs probability | 0.0451964569611 |
| Amino acid sequence | MSVCKYTVYGFFIFAFFYFTKDNIPYLKVSLQAFCGFQNISWNKYTLLFYYSPLTII |
| Secondary structure | LEEEEEEEELEEEEEEEEELLLLLLLEEEEHHHHLLLEEELLLLEEEEEEELLLEEL |
| PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL |
| PiMo | oooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiTTTTTTTTTTTTTTTTTTooo |
