Difference between revisions of "NONHSAT133710"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTTGAGCCAGGATGAGCCAGGAGAAGGAATTTCACAAGATAATGTCATCAGTTAAGGCAAGAATAGGCCATTTTCATTTCTTTTGTGGTGGAATGTCATCAGTTAAGGCAGGAACCGGCCATCTGGATGTGTACGTGTAGGTCACAGGAGATATGATGGCTTAGCTTGGGCTCAGAGGCCTGACATTCCTGTCTTCTTATATTAATAAGAAAAATAAAACAAAATAGTGGTGAAGTGTTGGGACAGCGAAAATTTTGGGGGATGGTACGGAGAGATAATGGGCGATGTTTCTTAGGGCTGCTTCGAGCGGAATTAGGGGCGGTGTGGGAACCTAGAATGGGAGAGATTAAGCTGAAGGAAGATTTTGTGGTAAGGGGTGATATTGTGGGACTGTTAGGAGAAACGTTCGTCATTTAGAATTACTGGTGATGGCCTAGATACGGTTTTGTATGAATTGAAAAACTAAATGGAATAAGAGAAGGAGAAAAACAGGTATTAAAGGACTAAGAATTGGGAGGACCTAGGACATTTAATTAGAGAGTGCCTAAGGAGGTTCAGCATAGTTCTGCCAGCAAAGATTATTTATTTACTTCAAGAGTTAAGAGTGGCAGTTTGGGGATAGCTCCAGGAGATATCAGCTGTGATGGCTTGGAGAAACAGTGTAAACCAGCAGTGTAAACAAGAGCAGGGCATGTGTGAGTAGTTGAGAACAGTGAATAGGAGTATGATTAGACAGAAGATAGTAGGGATGACAAGTTTTTTGGGGCACAGTCCAAGTTGGTCTTGGAATGATACTGGGGCCTAATAAAAAGGAGCATCTATACAGGAGCTTAAATGAGCTGTACCTTGTAACATTCTGAGGACAGGCCTGAATTCTGAGAAGGGAAAGTGGTAAAAGTATTGTCTAGTCCTTTTTAAGTTGGTGGCTGAGCTTGGTGAGGTGTGTTTTTAAAAGACCGTTAGTCCATTCTACCTTTCCTGAAGACTGAGGACCGTAAGGGAAATAAAGGTTTCACTGAATACCAAGAGCCTGAAAAAATGCTTGGCTGATTTGACTAATAAAGGCCGGTCTGCTATCAGACTGTATAGAGGTGGGAAGGCCAAACCGAGGAATTATGTCTAACAGAAGGGAAAAAATGACCGCGGTGGCCTTCTCAGACCCTGTAGGAAAGGCCTCTACCCATCCAGTGAAAGCGTCTACCTAGACTAAGAGGTATTTTAGTTTTCTGACTCGGGGCACGTGAGTAAAGTCAACTTGCCAGTCCTGGGCAGGGGCAAATCTCCGAGCTTGATATGTAGGAAAGGGAGGAGGCCTGAACAATCCCTGAGGGGTAGTAGAATAGCAAATGGAACACTGAGAAGTGATTTCTTTGAGGATAGATTTCCAGGATGGAAAGGAAATGAGAGGTTCTAAGAGACGGGCTAGCGGCTTGTAACCTACATGGAAGAGGTTATGAAATGACGACAGAATAGAATGGGCCTGTGAGGCTGGAAGGAGATATTTTCCTTGGTCTAAGAACCATTTGCCTTCTGTGGGAAGAGATTGATAGGTGGAAGTTTCAGTGGGGGAGTAGGTGGGAGTGACTGACGTGAAGGAGAAAAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAACGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACAT</dnaseq>| | sequence = <dnaseq>TTTGAGCCAGGATGAGCCAGGAGAAGGAATTTCACAAGATAATGTCATCAGTTAAGGCAAGAATAGGCCATTTTCATTTCTTTTGTGGTGGAATGTCATCAGTTAAGGCAGGAACCGGCCATCTGGATGTGTACGTGTAGGTCACAGGAGATATGATGGCTTAGCTTGGGCTCAGAGGCCTGACATTCCTGTCTTCTTATATTAATAAGAAAAATAAAACAAAATAGTGGTGAAGTGTTGGGACAGCGAAAATTTTGGGGGATGGTACGGAGAGATAATGGGCGATGTTTCTTAGGGCTGCTTCGAGCGGAATTAGGGGCGGTGTGGGAACCTAGAATGGGAGAGATTAAGCTGAAGGAAGATTTTGTGGTAAGGGGTGATATTGTGGGACTGTTAGGAGAAACGTTCGTCATTTAGAATTACTGGTGATGGCCTAGATACGGTTTTGTATGAATTGAAAAACTAAATGGAATAAGAGAAGGAGAAAAACAGGTATTAAAGGACTAAGAATTGGGAGGACCTAGGACATTTAATTAGAGAGTGCCTAAGGAGGTTCAGCATAGTTCTGCCAGCAAAGATTATTTATTTACTTCAAGAGTTAAGAGTGGCAGTTTGGGGATAGCTCCAGGAGATATCAGCTGTGATGGCTTGGAGAAACAGTGTAAACCAGCAGTGTAAACAAGAGCAGGGCATGTGTGAGTAGTTGAGAACAGTGAATAGGAGTATGATTAGACAGAAGATAGTAGGGATGACAAGTTTTTTGGGGCACAGTCCAAGTTGGTCTTGGAATGATACTGGGGCCTAATAAAAAGGAGCATCTATACAGGAGCTTAAATGAGCTGTACCTTGTAACATTCTGAGGACAGGCCTGAATTCTGAGAAGGGAAAGTGGTAAAAGTATTGTCTAGTCCTTTTTAAGTTGGTGGCTGAGCTTGGTGAGGTGTGTTTTTAAAAGACCGTTAGTCCATTCTACCTTTCCTGAAGACTGAGGACCGTAAGGGAAATAAAGGTTTCACTGAATACCAAGAGCCTGAAAAAATGCTTGGCTGATTTGACTAATAAAGGCCGGTCTGCTATCAGACTGTATAGAGGTGGGAAGGCCAAACCGAGGAATTATGTCTAACAGAAGGGAAAAAATGACCGCGGTGGCCTTCTCAGACCCTGTAGGAAAGGCCTCTACCCATCCAGTGAAAGCGTCTACCTAGACTAAGAGGTATTTTAGTTTTCTGACTCGGGGCACGTGAGTAAAGTCAACTTGCCAGTCCTGGGCAGGGGCAAATCTCCGAGCTTGATATGTAGGAAAGGGAGGAGGCCTGAACAATCCCTGAGGGGTAGTAGAATAGCAAATGGAACACTGAGAAGTGATTTCTTTGAGGATAGATTTCCAGGATGGAAAGGAAATGAGAGGTTCTAAGAGACGGGCTAGCGGCTTGTAACCTACATGGAAGAGGTTATGAAATGACGACAGAATAGAATGGGCCTGTGAGGCTGGAAGGAGATATTTTCCTTGGTCTAAGAACCATTTGCCTTCTGTGGGAAGAGATTGATAGGTGGAAGTTTCAGTGGGGGAGTAGGTGGGAGTGACTGACGTGAAGGAGAAAAACAATGACTAATCAAACTAACCTCAAAACAAATGATAACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGGACTCCTGCCTCACTCATTTACACCAACCACCCAACTATCTATAAACCTAGCCATGGCCATCCCCTTATGAGCGGGCGCAGTGATTATAGGCTTTCGCTCTAAGATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAACGCCACCCTAGCAATATCAACCATTAACCTTCCCTCTACACTTATCATCTTCACAATTCTAATTCTACTGACTATCCTAGAAATCGCTGTCGCCTTAATCCAAGCCTACGTTTTCACACTTCTAGTAAGCCTCTACCTGCACGACAACACAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(S)]] | + | [[Category:Intronic(S)]][[Category:NONHSAG053042]] |
Revision as of 12:10, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT133710 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(S) |
| Length |
2144 nt |
| Genomic location |
chr9+:102902688..102904291 |
| Exon number |
1 |
| Exons |
102902688..102904291 |
| Genome context |
|
| Sequence |
000001 TTTGAGCCAG GATGAGCCAG GAGAAGGAAT TTCACAAGAT AATGTCATCA GTTAAGGCAA GAATAGGCCA TTTTCATTTC 000080
000081 TTTTGTGGTG GAATGTCATC AGTTAAGGCA GGAACCGGCC ATCTGGATGT GTACGTGTAG GTCACAGGAG ATATGATGGC 000160 000161 TTAGCTTGGG CTCAGAGGCC TGACATTCCT GTCTTCTTAT ATTAATAAGA AAAATAAAAC AAAATAGTGG TGAAGTGTTG 000240 000241 GGACAGCGAA AATTTTGGGG GATGGTACGG AGAGATAATG GGCGATGTTT CTTAGGGCTG CTTCGAGCGG AATTAGGGGC 000320 000321 GGTGTGGGAA CCTAGAATGG GAGAGATTAA GCTGAAGGAA GATTTTGTGG TAAGGGGTGA TATTGTGGGA CTGTTAGGAG 000400 000401 AAACGTTCGT CATTTAGAAT TACTGGTGAT GGCCTAGATA CGGTTTTGTA TGAATTGAAA AACTAAATGG AATAAGAGAA 000480 000481 GGAGAAAAAC AGGTATTAAA GGACTAAGAA TTGGGAGGAC CTAGGACATT TAATTAGAGA GTGCCTAAGG AGGTTCAGCA 000560 000561 TAGTTCTGCC AGCAAAGATT ATTTATTTAC TTCAAGAGTT AAGAGTGGCA GTTTGGGGAT AGCTCCAGGA GATATCAGCT 000640 000641 GTGATGGCTT GGAGAAACAG TGTAAACCAG CAGTGTAAAC AAGAGCAGGG CATGTGTGAG TAGTTGAGAA CAGTGAATAG 000720 000721 GAGTATGATT AGACAGAAGA TAGTAGGGAT GACAAGTTTT TTGGGGCACA GTCCAAGTTG GTCTTGGAAT GATACTGGGG 000800 000801 CCTAATAAAA AGGAGCATCT ATACAGGAGC TTAAATGAGC TGTACCTTGT AACATTCTGA GGACAGGCCT GAATTCTGAG 000880 000881 AAGGGAAAGT GGTAAAAGTA TTGTCTAGTC CTTTTTAAGT TGGTGGCTGA GCTTGGTGAG GTGTGTTTTT AAAAGACCGT 000960 000961 TAGTCCATTC TACCTTTCCT GAAGACTGAG GACCGTAAGG GAAATAAAGG TTTCACTGAA TACCAAGAGC CTGAAAAAAT 001040 001041 GCTTGGCTGA TTTGACTAAT AAAGGCCGGT CTGCTATCAG ACTGTATAGA GGTGGGAAGG CCAAACCGAG GAATTATGTC 001120 001121 TAACAGAAGG GAAAAAATGA CCGCGGTGGC CTTCTCAGAC CCTGTAGGAA AGGCCTCTAC CCATCCAGTG AAAGCGTCTA 001200 001201 CCTAGACTAA GAGGTATTTT AGTTTTCTGA CTCGGGGCAC GTGAGTAAAG TCAACTTGCC AGTCCTGGGC AGGGGCAAAT 001280 001281 CTCCGAGCTT GATATGTAGG AAAGGGAGGA GGCCTGAACA ATCCCTGAGG GGTAGTAGAA TAGCAAATGG AACACTGAGA 001360 001361 AGTGATTTCT TTGAGGATAG ATTTCCAGGA TGGAAAGGAA ATGAGAGGTT CTAAGAGACG GGCTAGCGGC TTGTAACCTA 001440 001441 CATGGAAGAG GTTATGAAAT GACGACAGAA TAGAATGGGC CTGTGAGGCT GGAAGGAGAT ATTTTCCTTG GTCTAAGAAC 001520 001521 CATTTGCCTT CTGTGGGAAG AGATTGATAG GTGGAAGTTT CAGTGGGGGA GTAGGTGGGA GTGACTGACG TGAAGGAGAA 001600 001601 AAACAATGAC TAATCAAACT AACCTCAAAA CAAATGATAA CCATACACAA CACTAAAGGA CGAACCTGAT CTCTTATACT 001680 001681 AGTATCCTTA ATCATTTTTA TTGCCACAAC TAACCTCCTC GGACTCCTGC CTCACTCATT TACACCAACC ACCCAACTAT 001760 001761 CTATAAACCT AGCCATGGCC ATCCCCTTAT GAGCGGGCGC AGTGATTATA GGCTTTCGCT CTAAGATTAA AAATGCCCTA 001840 001841 GCCCACTTCT TACCACAAGG CACACCTACA CCCCTTATCC CCATACTAGT TATTATCGAA ACCATCAGCC TACTCATTCA 001920 001921 ACCAATAGCC CTGGCCGTAC GCCTAACCGC TAACATTACT GCAGGCCACC TACTCATGCA CCTAATTGGA AACGCCACCC 002000 002001 TAGCAATATC AACCATTAAC CTTCCCTCTA CACTTATCAT CTTCACAATT CTAATTCTAC TGACTATCCT AGAAATCGCT 002080 002081 GTCGCCTTAA TCCAAGCCTA CGTTTTCACA CTTCTAGTAA GCCTCTACCT GCACGACAAC ACAT |
Predicted Small Protein
| Name | NONHSAT133710_smProtein_11:139 |
| Length | 43 |
| Molecular weight | 4685.3908 |
| Aromaticity | 0.119047619048 |
| Instability index | 53.8976190476 |
| Isoelectric point | 9.03656005859 |
| Runs | 9 |
| Runs residual | 0.038125376733 |
| Runs probability | 0.0344952795934 |
| Amino acid sequence | MSQEKEFHKIMSSVKARIGHFHFFCGGMSSVKAGTGHLDVYV |
| Secondary structure | LLHHHHHHHHHHHHHHLLLEEEEELLLLEEEELLLLEEEEEL |
| PRMN | - |
| PiMo | - |
