Difference between revisions of "NONHSAT138978"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>CTGATCCTGCAGCTCCTCGAGGGTGTCATCGCTTTCCCCCTTCCCAGACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCaccaattcctcctgcttccctgggacttgccggcttttagcactgcaattcactcagcaaactgggactgttggtcaccctacctggcagccagtgataaggtgagggccactcctgggagggaggacacctgtggggaaaattcttgtgttatttatttctccttcgggatagggtgcctgcagcgcttcatgggagggggtgggctgatgctgcgggctcagaagtttcaagggcatctggggagaccagatattcagagaccttctagatgtgcctgttccatgtatcagggacgcaggttttcccaacagggctggtgtcattggcatgacagacctgccttggctgagcgttcacctgtctttggagttcagccaccttagcaagtcctgggtttgttcttcagactttgctgctcgcccattgcctggatcgggggctactttgtaaaccaccaggaagactccagtgtttctggttaatttttagatgtttgttaattgctcttggtctctcattaatcccctgtgggtcatccaggaaacatactcaccactgtctgttctctgagttttcatttccaggcatccgccctgcctggatctcctcacctgccaggaacttcctctccacaagccggccatcccagcaaaagttctaacaccaaagATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAGAGGCTCCTTGAAGGTAGGTGCACACTCATGTCTTTGTTACTTGTAAGGGGGCATCTTACAGGCAAGAGGAGTTAGGTGAATGTGAagaggaaggaactactctgggcagggggctgggggacgcttcgtagaggagggggtgtttgagctgggccttgaaggtcaaaagggttttgttaggtgggaaatgggggaaggacagtctgaaagggttaggtacattcaaggagcccagagAAGGTTCGTGGCTGGAGCAGACGCATTCGTAGAGTGAAGTCATGGGAGAGAAGAGGCTGGGAAACTAGATTGGTTCCAACTCCTAAAGGACCACTGAAGGAGTGTGGGCTGCACGCTGGGTGCAGCAGGTGAGTTTCCTCACTTGGGTTTCACTGTCAGCATTTTAAAAAGGCAAACTGGT</dnaseq>|
 
sequence = <dnaseq>CTGATCCTGCAGCTCCTCGAGGGTGTCATCGCTTTCCCCCTTCCCAGACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCaccaattcctcctgcttccctgggacttgccggcttttagcactgcaattcactcagcaaactgggactgttggtcaccctacctggcagccagtgataaggtgagggccactcctgggagggaggacacctgtggggaaaattcttgtgttatttatttctccttcgggatagggtgcctgcagcgcttcatgggagggggtgggctgatgctgcgggctcagaagtttcaagggcatctggggagaccagatattcagagaccttctagatgtgcctgttccatgtatcagggacgcaggttttcccaacagggctggtgtcattggcatgacagacctgccttggctgagcgttcacctgtctttggagttcagccaccttagcaagtcctgggtttgttcttcagactttgctgctcgcccattgcctggatcgggggctactttgtaaaccaccaggaagactccagtgtttctggttaatttttagatgtttgttaattgctcttggtctctcattaatcccctgtgggtcatccaggaaacatactcaccactgtctgttctctgagttttcatttccaggcatccgccctgcctggatctcctcacctgccaggaacttcctctccacaagccggccatcccagcaaaagttctaacaccaaagATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAGAGGCTCCTTGAAGGTAGGTGCACACTCATGTCTTTGTTACTTGTAAGGGGGCATCTTACAGGCAAGAGGAGTTAGGTGAATGTGAagaggaaggaactactctgggcagggggctgggggacgcttcgtagaggagggggtgtttgagctgggccttgaaggtcaaaagggttttgttaggtgggaaatgggggaaggacagtctgaaagggttaggtacattcaaggagcccagagAAGGTTCGTGGCTGGAGCAGACGCATTCGTAGAGTGAAGTCATGGGAGAGAAGAGGCTGGGAAACTAGATTGGTTCCAACTCCTAAAGGACCACTGAAGGAGTGTGGGCTGCACGCTGGGTGCAGCAGGTGAGTTTCCTCACTTGGGTTTCACTGTCAGCATTTTAAAAAGGCAAACTGGT</dnaseq>|
 
}}
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:NONHSAG055499]]

Revision as of 05:49, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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You can also add sub-section(s) at will.

Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT138978

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1368 nt

Genomic location

chrX+:149114029..149115970

Exon number

2

Exons

149114029..149114817,149115392..149115970

Genome context

Sequence
000001 CTGATCCTGC AGCTCCTCGA GGGTGTCATC GCTTTCCCCC TTCCCAGACC CAGCACACCC TGCCTGCATG GCGCTGCGCT 000080
000081 GCACCTTCAC TCTGGTCACG GGTCTGGCAG TCAGCTCacc aattcctcct gcttccctgg gacttgccgg cttttagcac 000160
000161 tgcaattcac tcagcaaact gggactgttg gtcaccctac ctggcagcca gtgataaggt gagggccact cctgggaggg 000240
000241 aggacacctg tggggaaaat tcttgtgtta tttatttctc cttcgggata gggtgcctgc agcgcttcat gggagggggt 000320
000321 gggctgatgc tgcgggctca gaagtttcaa gggcatctgg ggagaccaga tattcagaga ccttctagat gtgcctgttc 000400
000401 catgtatcag ggacgcaggt tttcccaaca gggctggtgt cattggcatg acagacctgc cttggctgag cgttcacctg 000480
000481 tctttggagt tcagccacct tagcaagtcc tgggtttgtt cttcagactt tgctgctcgc ccattgcctg gatcgggggc 000560
000561 tactttgtaa accaccagga agactccagt gtttctggtt aatttttaga tgtttgttaa ttgctcttgg tctctcatta 000640
000641 atcccctgtg ggtcatccag gaaacatact caccactgtc tgttctctga gttttcattt ccaggcatcc gccctgcctg 000720
000721 gatctcctca cctgccagga acttcctctc cacaagccgg ccatcccagc aaaagttcta acaccaaagA TGACTGCCAG 000800
000801 GGGCATGAAG GGGATGTGCT TCCAGGGCAT TTGCTGGCAG GGCGTCTCGT GATCTCTTGG TATTGGTGTG AGCACAGCCT 000880
000881 GGCAGGAGAG GGCAGATCTC CATGCAAAGT ATGTCAGAAA GCAGATGGAA GCCAGGCCCC CTCCTGAAAG AGGCTCCTTG 000960
000961 AAGGTAGGTG CACACTCATG TCTTTGTTAC TTGTAAGGGG GCATCTTACA GGCAAGAGGA GTTAGGTGAA TGTGAagagg 001040
001041 aaggaactac tctgggcagg gggctggggg acgcttcgta gaggaggggg tgtttgagct gggccttgaa ggtcaaaagg 001120
001121 gttttgttag gtgggaaatg ggggaaggac agtctgaaag ggttaggtac attcaaggag cccagagAAG GTTCGTGGCT 001200
001201 GGAGCAGACG CATTCGTAGA GTGAAGTCAT GGGAGAGAAG AGGCTGGGAA ACTAGATTGG TTCCAACTCC TAAAGGACCA 001280
001281 CTGAAGGAGT GTGGGCTGCA CGCTGGGTGC AGCAGGTGAG TTTCCTCACT TGGGTTTCAC TGTCAGCATT TTAAAAAGGC 001360
001361 AAACTGGT
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Predicted Small Protein

Name NONHSAT138978_smProtein_308:502
Length 65
Molecular weight 7236.2391
Aromaticity 0.09375
Instability index 92.903125
Isoelectric point 10.7061157227
Runs 9
Runs residual 0.00796875
Runs probability 0.0371155469195
Amino acid sequence MGGGGLMLRAQKFQGHLGRPDIQRPSRCACSMYQGRRFSQQGWCHWHDRPALAERSPVFG
VQPP
Secondary structure LLLLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEEELLLLEEEEELLLHHHLLLLLLL
LLLL
PRMN -
PiMo -