Difference between revisions of "NONHSAT139740"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CGGGGAAGGCCATGCATCATCTGCTACCCTGGAGGATCTGGAGCCAGTACCGAGAACTAGCAGTGGCCCTGCACTCAAGCTCCGCAATAATCAGTCAACTCAGTGAAAACATCAATTCACTGCTGAACCCCTGGCCCCAGAGCCCCCAGCAGGGCCCTCTGAGGTGGAGCAGCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTGGAGAGTGTGGGAAGACAGCTCCAGGCTGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAGACAGGAGGAGAGGCTGCAGGAACAGGAGAGGCTGCTGGACAAGGGGTAGGAGCTGCTGGAACAGGAGAGGCTTCAGGAGCAGGATGAGAGGCTGTGGCAGCAGGAGACTCTGTGGGAGCTGGAGAGGATGCTGGAGCTGGAGTGGGAAGCCCTCTACAAGCAGCAGGCCGAGCCCCACAGCAGCTTTGAGGAGCTGGTAATAATGAGAACAAGAGTGCACTGCAGTTGGAGCGGCAAGTAAAGGAGCTGAAGCTTGGAGAACCTGGAAGCTACCAGCCAGCAGAAACAGCAGCTAAAGCCCAGTTGAGCCTCATGGCTCTCCCTGGGGAAGGATATGGAGGAGGACATCTGGACAATGAGGAGGAGGCACCTCGGCCCATGCTGAACATTCCAGGGGACCTGGAGAGCCGGGAGGCCATGGTGGCATTTTTCAACTCCGCTGGAGCCAGTGCCCAGGAGGAGCAAAGCGTGTGCTGCCAGCCCCTGGCTCACCCAGTGGCCTCATCCCAGAAAAAGCCAGAGGCAGCGGCCCCAGCCCCAGAGACTGGGGGTGAATCTGTGTGTGGGGACACCCACTGGGCCCTGCAGGAGGCCATGGAGAAGCTGCAGCAACTTTATGGAAGGAGAAGATGGACCTGAAGGAGCTGGTGGAGAAACTAGAGCTTCAGTTCATCCACCTCTCAGGACAGACAGACACCATGAGAAAGTACATCAGCCAGGGGGCAGTGCCAAAGACGCAGCACTGGGAGAGGAGGACATCGTCAGGCTGGCCCAGGACCAGGAGG</dnaseq>| | sequence = <dnaseq>CGGGGAAGGCCATGCATCATCTGCTACCCTGGAGGATCTGGAGCCAGTACCGAGAACTAGCAGTGGCCCTGCACTCAAGCTCCGCAATAATCAGTCAACTCAGTGAAAACATCAATTCACTGCTGAACCCCTGGCCCCAGAGCCCCCAGCAGGGCCCTCTGAGGTGGAGCAGCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTGGAGAGTGTGGGAAGACAGCTCCAGGCTGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAGACAGGAGGAGAGGCTGCAGGAACAGGAGAGGCTGCTGGACAAGGGGTAGGAGCTGCTGGAACAGGAGAGGCTTCAGGAGCAGGATGAGAGGCTGTGGCAGCAGGAGACTCTGTGGGAGCTGGAGAGGATGCTGGAGCTGGAGTGGGAAGCCCTCTACAAGCAGCAGGCCGAGCCCCACAGCAGCTTTGAGGAGCTGGTAATAATGAGAACAAGAGTGCACTGCAGTTGGAGCGGCAAGTAAAGGAGCTGAAGCTTGGAGAACCTGGAAGCTACCAGCCAGCAGAAACAGCAGCTAAAGCCCAGTTGAGCCTCATGGCTCTCCCTGGGGAAGGATATGGAGGAGGACATCTGGACAATGAGGAGGAGGCACCTCGGCCCATGCTGAACATTCCAGGGGACCTGGAGAGCCGGGAGGCCATGGTGGCATTTTTCAACTCCGCTGGAGCCAGTGCCCAGGAGGAGCAAAGCGTGTGCTGCCAGCCCCTGGCTCACCCAGTGGCCTCATCCCAGAAAAAGCCAGAGGCAGCGGCCCCAGCCCCAGAGACTGGGGGTGAATCTGTGTGTGGGGACACCCACTGGGCCCTGCAGGAGGCCATGGAGAAGCTGCAGCAACTTTATGGAAGGAGAAGATGGACCTGAAGGAGCTGGTGGAGAAACTAGAGCTTCAGTTCATCCACCTCTCAGGACAGACAGACACCATGAGAAAGTACATCAGCCAGGGGGCAGTGCCAAAGACGCAGCACTGGGAGAGGAGGACATCGTCAGGCTGGCCCAGGACCAGGAGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG055955]] |
Revision as of 06:11, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT139740 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1061 nt |
| Genomic location |
chrY-:26356114..26360978 |
| Exon number |
9 |
| Exons |
26356114..26356197,26356280..26356372,26356462..26356650,26356906..26356994,26357415..26357489,26358846..26358903,26359200..26359551,26360671..26360749,26360936..26360978 |
| Genome context |
|
| Sequence |
000001 CGGGGAAGGC CATGCATCAT CTGCTACCCT GGAGGATCTG GAGCCAGTAC CGAGAACTAG CAGTGGCCCT GCACTCAAGC 000080
000081 TCCGCAATAA TCAGTCAACT CAGTGAAAAC ATCAATTCAC TGCTGAACCC CTGGCCCCAG AGCCCCCAGC AGGGCCCTCT 000160 000161 GAGGTGGAGC AGCTACAAGA TGAGACCAAC CACCTAAGGA AGGAGCTGGA GAGTGTGGGA AGACAGCTCC AGGCTGAGGT 000240 000241 GGAAAACAAT CAGATGTTGA GTCTCCTGAA CAGGAGACAG GAGGAGAGGC TGCAGGAACA GGAGAGGCTG CTGGACAAGG 000320 000321 GGTAGGAGCT GCTGGAACAG GAGAGGCTTC AGGAGCAGGA TGAGAGGCTG TGGCAGCAGG AGACTCTGTG GGAGCTGGAG 000400 000401 AGGATGCTGG AGCTGGAGTG GGAAGCCCTC TACAAGCAGC AGGCCGAGCC CCACAGCAGC TTTGAGGAGC TGGTAATAAT 000480 000481 GAGAACAAGA GTGCACTGCA GTTGGAGCGG CAAGTAAAGG AGCTGAAGCT TGGAGAACCT GGAAGCTACC AGCCAGCAGA 000560 000561 AACAGCAGCT AAAGCCCAGT TGAGCCTCAT GGCTCTCCCT GGGGAAGGAT ATGGAGGAGG ACATCTGGAC AATGAGGAGG 000640 000641 AGGCACCTCG GCCCATGCTG AACATTCCAG GGGACCTGGA GAGCCGGGAG GCCATGGTGG CATTTTTCAA CTCCGCTGGA 000720 000721 GCCAGTGCCC AGGAGGAGCA AAGCGTGTGC TGCCAGCCCC TGGCTCACCC AGTGGCCTCA TCCCAGAAAA AGCCAGAGGC 000800 000801 AGCGGCCCCA GCCCCAGAGA CTGGGGGTGA ATCTGTGTGT GGGGACACCC ACTGGGCCCT GCAGGAGGCC ATGGAGAAGC 000880 000881 TGCAGCAACT TTATGGAAGG AGAAGATGGA CCTGAAGGAG CTGGTGGAGA AACTAGAGCT TCAGTTCATC CACCTCTCAG 000960 000961 GACAGACAGA CACCATGAGA AAGTACATCA GCCAGGGGGC AGTGCCAAAG ACGCAGCACT GGGAGAGGAG GACATCGTCA 001040 001041 GGCTGGCCCA GGACCAGGAG G |
Predicted Small Protein
| Name | NONHSAT139740_smProtein_11:196 |
| Length | 62 |
| Molecular weight | 7140.0873 |
| Aromaticity | 0.0983606557377 |
| Instability index | 86.7983606557 |
| Isoelectric point | 10.2560424805 |
| Runs | 7 |
| Runs residual | 0.0380629357452 |
| Runs probability | 0.0363388598683 |
| Amino acid sequence | MHHLLPWRIWSQYRELAVALHSSSAIISQLSENINSLLNPWPQSPQQGPLRWSSYKMRPT T |
| Secondary structure | LLLLLLHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHLLLLLLLLLLLLLEEELLLLLLL L |
| PRMN | - |
| PiMo | - |
