Difference between revisions of "NONHSAT143569"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>GAATATGCAGATGAGGCCTGATGTGATTACACTGTACAATTACTCCTATCCATGGTGGTGTCAGGGGCTGCTAGGGAGACAGAGAGTCAGACAGCCTCCAAGCCAATACAGAGTTTTGTTTTCGGTATTTTTCCTATCTCCTTGGCACTGCGGCACATGCAGATGTCGCTGTTGTTCTTTATAAAGCCCTAATGTATGCAAAAGCATAACGATTTGGTTTGGACGCAAAGCATCAACGAAATATTATGGATGTCTTCAAGAAAGGGGGAGAGAAAATCCTGACTGAAGGAATGTCCACATAAATTATTTTTATTTAAATGAATTCAAAGGATGGGATGAGGGCAAGTCAGACGGAGTCGCGTGGAAAACATGAATAATATTAATATGCATAAAGAATTCTCACCAACGAGGAGAAGCTCCTCACTACAGCTCTTGGGACAAACAGGTTCATTAGGAAACAGCTCAGAGCGACTACAGCATTTTGCTATTTCAATTTTTTCCCTTATTTTAAATGAAGAGTCAGACAGATGTGTTTTCTTTGCATGGCAGCATTGAGATGGATCCAATCTGCGAAATTTGCTGCCCAAATAGCATTTCTAATGGAAACTGGAACTAAACAAGGGCACGGATATGGGAGGGAGGGGAGAAGAGAGAATACACGAAGAAGAGTATATTCAGAGCCACTGCATGGCATTTTGAGTACAGGAGGTTTTCAGGAACGATCTTTGCTTCATTAGTCTCCCCTGTGGGCTCCTGATGTAGGGAGCTATCAGGGTATACCAAGATGAGCACTGAGACAGGCCTTTCTAGGTCTGAGGCTGAGGAAAGCAGCGGCAACTTGGTGCCTGTCCCCCAGAGCTGTCTACAGTTCAGAAGCCAAAAGCACAGCTACTTCTAATTTGGGGATGCAGTAGAGTGCCTACTGATCCAGGTATTTGTGAAAGATGGAATTCTTGGTGCTATCATAGTATACATTGCTAAAGAGCAGATGAAATCGGCTGCTTAAGGAGGCCTGATAATATTTATGTTGGTTAATTC</dnaseq>| | sequence = <dnaseq>GAATATGCAGATGAGGCCTGATGTGATTACACTGTACAATTACTCCTATCCATGGTGGTGTCAGGGGCTGCTAGGGAGACAGAGAGTCAGACAGCCTCCAAGCCAATACAGAGTTTTGTTTTCGGTATTTTTCCTATCTCCTTGGCACTGCGGCACATGCAGATGTCGCTGTTGTTCTTTATAAAGCCCTAATGTATGCAAAAGCATAACGATTTGGTTTGGACGCAAAGCATCAACGAAATATTATGGATGTCTTCAAGAAAGGGGGAGAGAAAATCCTGACTGAAGGAATGTCCACATAAATTATTTTTATTTAAATGAATTCAAAGGATGGGATGAGGGCAAGTCAGACGGAGTCGCGTGGAAAACATGAATAATATTAATATGCATAAAGAATTCTCACCAACGAGGAGAAGCTCCTCACTACAGCTCTTGGGACAAACAGGTTCATTAGGAAACAGCTCAGAGCGACTACAGCATTTTGCTATTTCAATTTTTTCCCTTATTTTAAATGAAGAGTCAGACAGATGTGTTTTCTTTGCATGGCAGCATTGAGATGGATCCAATCTGCGAAATTTGCTGCCCAAATAGCATTTCTAATGGAAACTGGAACTAAACAAGGGCACGGATATGGGAGGGAGGGGAGAAGAGAGAATACACGAAGAAGAGTATATTCAGAGCCACTGCATGGCATTTTGAGTACAGGAGGTTTTCAGGAACGATCTTTGCTTCATTAGTCTCCCCTGTGGGCTCCTGATGTAGGGAGCTATCAGGGTATACCAAGATGAGCACTGAGACAGGCCTTTCTAGGTCTGAGGCTGAGGAAAGCAGCGGCAACTTGGTGCCTGTCCCCCAGAGCTGTCTACAGTTCAGAAGCCAAAAGCACAGCTACTTCTAATTTGGGGATGCAGTAGAGTGCCTACTGATCCAGGTATTTGTGAAAGATGGAATTCTTGGTGCTATCATAGTATACATTGCTAAAGAGCAGATGAAATCGGCTGCTTAAGGAGGCCTGATAATATTTATGTTGGTTAATTC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG019924]] |
Revision as of 07:31, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT143569 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1038 nt |
| Genomic location |
chr16+:72463032..72464069 |
| Exon number |
1 |
| Exons |
72463032..72464069 |
| Genome context |
|
| Sequence |
000001 GAATATGCAG ATGAGGCCTG ATGTGATTAC ACTGTACAAT TACTCCTATC CATGGTGGTG TCAGGGGCTG CTAGGGAGAC 000080
000081 AGAGAGTCAG ACAGCCTCCA AGCCAATACA GAGTTTTGTT TTCGGTATTT TTCCTATCTC CTTGGCACTG CGGCACATGC 000160 000161 AGATGTCGCT GTTGTTCTTT ATAAAGCCCT AATGTATGCA AAAGCATAAC GATTTGGTTT GGACGCAAAG CATCAACGAA 000240 000241 ATATTATGGA TGTCTTCAAG AAAGGGGGAG AGAAAATCCT GACTGAAGGA ATGTCCACAT AAATTATTTT TATTTAAATG 000320 000321 AATTCAAAGG ATGGGATGAG GGCAAGTCAG ACGGAGTCGC GTGGAAAACA TGAATAATAT TAATATGCAT AAAGAATTCT 000400 000401 CACCAACGAG GAGAAGCTCC TCACTACAGC TCTTGGGACA AACAGGTTCA TTAGGAAACA GCTCAGAGCG ACTACAGCAT 000480 000481 TTTGCTATTT CAATTTTTTC CCTTATTTTA AATGAAGAGT CAGACAGATG TGTTTTCTTT GCATGGCAGC ATTGAGATGG 000560 000561 ATCCAATCTG CGAAATTTGC TGCCCAAATA GCATTTCTAA TGGAAACTGG AACTAAACAA GGGCACGGAT ATGGGAGGGA 000640 000641 GGGGAGAAGA GAGAATACAC GAAGAAGAGT ATATTCAGAG CCACTGCATG GCATTTTGAG TACAGGAGGT TTTCAGGAAC 000720 000721 GATCTTTGCT TCATTAGTCT CCCCTGTGGG CTCCTGATGT AGGGAGCTAT CAGGGTATAC CAAGATGAGC ACTGAGACAG 000800 000801 GCCTTTCTAG GTCTGAGGCT GAGGAAAGCA GCGGCAACTT GGTGCCTGTC CCCCAGAGCT GTCTACAGTT CAGAAGCCAA 000880 000881 AAGCACAGCT ACTTCTAATT TGGGGATGCA GTAGAGTGCC TACTGATCCA GGTATTTGTG AAAGATGGAA TTCTTGGTGC 000960 000961 TATCATAGTA TACATTGCTA AAGAGCAGAT GAAATCGGCT GCTTAAGGAG GCCTGATAAT ATTTATGTTG GTTAATTC |
Predicted Small Protein
| Name | NONHSAT143569_smProtein_527:736 |
| Length | 70 |
| Molecular weight | 7872.0029 |
| Aromaticity | 0.101449275362 |
| Instability index | 68.7695652174 |
| Isoelectric point | 10.036315918 |
| Runs | 9 |
| Runs residual | 0.0088965418281 |
| Runs probability | 0.0411489921295 |
| Amino acid sequence | MCFLCMAALRWIQSAKFAAQIAFLMETGTKQGHGYGREGRRENTRRRVYSEPLHGILSTG GFQERSLLH |
| Secondary structure | LHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLEEEEELLLLLEELLL LEEELLLLL |
| PRMN | - |
| PiMo | - |
