Difference between revisions of "NONHSAT145628"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGGAACTGCAAGTTCCCACGTCCACCCCCGCCACACCCACAGCCTGCCCTGCATACACCACTGCTGGAGATGTAGCCAGGACAGCTTGCCCTGTCCCCTGACCCCACGGACCTTGTTAACACCGCTGCTCCCCTCGGTGATATTTACCTGTCCGTGGCTGTCCTGACCAATACTCCCAAGGAGACAGTGCATCACTGGGCCAACAGGGCAGAGCCCCAGGGGACCACTCCCTTTACGACATGGACGGACACTTTAGGAGTGACGGTTACCCTCTCCTTGGATGAGGAGGGGCTCCAAGGATGGACATGTCAGTCTCACCTGGAGGGAGAGGGGCAGTGGGTGGGGGCAACGCTCAGTGGCTGGTGGACAGGCAAGGGGTGAGTGAGCCCTGCCCAACTGACTCCATTGGCGGCCACTGGCCTTGCCTGGCATTCACGGAACAGGCGCTTCATAAACTTGTTGCTTCAATGTGAAATCACCTCAATTTTGTAAATGCGTCTGTAGCATCCACAGGACTCATCATCTAGAATTCAAACCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>GGGAACTGCAAGTTCCCACGTCCACCCCCGCCACACCCACAGCCTGCCCTGCATACACCACTGCTGGAGATGTAGCCAGGACAGCTTGCCCTGTCCCCTGACCCCACGGACCTTGTTAACACCGCTGCTCCCCTCGGTGATATTTACCTGTCCGTGGCTGTCCTGACCAATACTCCCAAGGAGACAGTGCATCACTGGGCCAACAGGGCAGAGCCCCAGGGGACCACTCCCTTTACGACATGGACGGACACTTTAGGAGTGACGGTTACCCTCTCCTTGGATGAGGAGGGGCTCCAAGGATGGACATGTCAGTCTCACCTGGAGGGAGAGGGGCAGTGGGTGGGGGCAACGCTCAGTGGCTGGTGGACAGGCAAGGGGTGAGTGAGCCCTGCCCAACTGACTCCATTGGCGGCCACTGGCCTTGCCTGGCATTCACGGAACAGGCGCTTCATAAACTTGTTGCTTCAATGTGAAATCACCTCAATTTTGTAAATGCGTCTGTAGCATCCACAGGACTCATCATCTAGAATTCAAACCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
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| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG020819]] |
Revision as of 08:32, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT145628 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
580 nt |
| Genomic location |
chr17-:10561859..10562399 |
| Exon number |
1 |
| Exons |
10561859..10562399 |
| Genome context |
|
| Sequence |
000001 GGGAACTGCA AGTTCCCACG TCCACCCCCG CCACACCCAC AGCCTGCCCT GCATACACCA CTGCTGGAGA TGTAGCCAGG 000080
000081 ACAGCTTGCC CTGTCCCCTG ACCCCACGGA CCTTGTTAAC ACCGCTGCTC CCCTCGGTGA TATTTACCTG TCCGTGGCTG 000160 000161 TCCTGACCAA TACTCCCAAG GAGACAGTGC ATCACTGGGC CAACAGGGCA GAGCCCCAGG GGACCACTCC CTTTACGACA 000240 000241 TGGACGGACA CTTTAGGAGT GACGGTTACC CTCTCCTTGG ATGAGGAGGG GCTCCAAGGA TGGACATGTC AGTCTCACCT 000320 000321 GGAGGGAGAG GGGCAGTGGG TGGGGGCAAC GCTCAGTGGC TGGTGGACAG GCAAGGGGTG AGTGAGCCCT GCCCAACTGA 000400 000401 CTCCATTGGC GGCCACTGGC CTTGCCTGGC ATTCACGGAA CAGGCGCTTC ATAAACTTGT TGCTTCAATG TGAAATCACC 000480 000481 TCAATTTTGT AAATGCGTCT GTAGCATCCA CAGGACTCAT CATCTAGAAT TCAAACCCTT AAAAAAAAAA AAAAAAAAAA 000560 000561 AAAAAAAAAA AAAAAAAAAA |
Predicted Small Protein
| Name | NONHSAT145628_smProtein_299:472 |
| Length | 58 |
| Molecular weight | 5910.6347 |
| Aromaticity | 0.0526315789474 |
| Instability index | 52.6947368421 |
| Isoelectric point | 5.33734130859 |
| Runs | 9 |
| Runs residual | 0.00394736842105 |
| Runs probability | 0.0252507409371 |
| Amino acid sequence | MDMSVSPGGRGAVGGGNAQWLVDRQGVSEPCPTDSIGGHWPCLAFTEQALHKLVASM |
| Secondary structure | LLLEELLLLLLEELLLLEEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
