Difference between revisions of "ENST00000444042.2"

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==Annotated Information==
 
==Annotated Information==
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===Name===
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CYP4A22-AS1
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 +
===Characteristics===
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Spliced, up to 4 exons, ~920 nt transcript ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010)]).
 +
Loci covers ~ 80kb and is antisense to CYP4A22 and CYP4Z1 ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010)]).
 +
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Transcribed bidirectionally with [http://www.lncrnadb.org/Detail.aspx?TKeyID=276 PDZK1IP1-AS1], downstream from TAL1 and PDZK1IP1 on same strand ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010)]).
 +
 +
In-vitro translation showed no sign of protein product ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010)]).
 +
 
===Transcriptomic Nomeclature===
 
===Transcriptomic Nomeclature===
 
Please input transcriptomic nomeclature information here.
 
Please input transcriptomic nomeclature information here.
  
 
===Function===
 
===Function===
−
Please input function information here.
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CYP4A22-AS1 expression stimulates TAL1 gene expression (in MCF7 cells) ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010)]).
  
 
===Regulation===
 
===Regulation===
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===Expression===
 
===Expression===
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Please input expression information here.
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Expressed and functionally characterized in MCF7 cells ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010)]).
 +
 
 +
CYP4A22-AS1 identified as enriched in K562, HelaS3 and HepG2 nuclear fractions ([http://www.ncbi.nlm.nih.gov/pubmed/22955988 Derrien (2012)]).  
  
 
===Allelic Information and Variation===
 
===Allelic Information and Variation===
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[[Category:Overlapping(AS)]]
 
[[Category:Overlapping(AS)]]
 
[[Category:Antisense]]
 
[[Category:Antisense]]
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{{lncrnadb|
 
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tID = ENST00000444042.2|
 
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ltID = CYP4A22-AS1|
 
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ann = <tab class=wikitable sep=tab head=top>
 
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Section Description
 
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ID CYP4A22-AS1
 
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Characteristics Spliced, up to 4 exons, ~920 nt transcript ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))].Loci covers ~ 80kb and is antisense to CYP4A22 and CYP4Z1 ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. Transcribed bidirectionally with [http://www.lncrnadb.org/Detail.aspx?TKeyID=276 PDZK1IP1-AS1], downstream from TAL1 and PDZK1IP1 on same strand ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. In-vitro translation showed no sign of protein product ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))].
 
−
Expression Expressed and functionally characterized in MCF7 cells ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. CYP4A22-AS1 identified as enriched in K562, HelaS3 and HepG2 nuclear fractions ([http://www.ncbi.nlm.nih.gov/pubmed/22955988 Derrien (2012))].
 
−
Function CYP4A22-AS1 expression stimulates TAL1 gene expression (in MCF7 cells) ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))].
 
−
</tab>|
 
−
}}
 

Revision as of 07:27, 9 October 2014

Please input one-sentence summary here.

Annotated Information

Name

CYP4A22-AS1

Characteristics

Spliced, up to 4 exons, ~920 nt transcript (Arom (2010)). Loci covers ~ 80kb and is antisense to CYP4A22 and CYP4Z1 (Arom (2010)).

Transcribed bidirectionally with PDZK1IP1-AS1, downstream from TAL1 and PDZK1IP1 on same strand (Arom (2010)).

In-vitro translation showed no sign of protein product (Arom (2010)).

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

CYP4A22-AS1 expression stimulates TAL1 gene expression (in MCF7 cells) (Arom (2010)).

Regulation

Please input regulation information here.

Expression

Expressed and functionally characterized in MCF7 cells (Arom (2010)).

CYP4A22-AS1 identified as enriched in K562, HelaS3 and HepG2 nuclear fractions (Derrien (2012)).

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

ENST00000444042.2

Source

Gencode19

Same with

lnc-PDZK1IP1-2:1,NONHSAT003050

Classification

overlapping(AS),antisense

Length

921 nt

Genomic location

chr1-:47562325..47644943

Exon number

4

Exons

47562325..47562849,47642707..47642741,47643843..47644121,47644862..47644943

Genome context

Sequence
000001 GAAGTTGAGC TTCAGGCGCG GCTCTTCCCC GTCACACTGG GACCGGACGC ATTTCCATGG CGTGGTCCCA GGAACCTCTC 000080
000081 AGAGTGAACT GAATTGGATG CAAGATCACG GTGCGTCAGA GCTAGCAAGA TCCTTAGGAT CATTTAGCCT GGTTTACTAA 000160
000161 TATTACACTA TGGAATTTAA GCCCAAGGAA TGGAGAGTAC CCGACGAGCG TTATGTAAGG AGTCGAGTGA GAAGTAAGCT 000240
000241 GGATGCTCTG CTTGGCTGGC AGGTACAGAA TGTGCCAGAC CCATCTGTAC CAGCCTGGAT CTCTTGAGGC ATCAGCACAA 000320
000321 TGGACCTGGC CACACCAGTT TATTCCACAC CGCTGAGGCT GGTCTTTGAG GAATCACCAC ACTGTCTTCC ACAATGCACC 000400
000401 ATGGAATACT ATGCAGACAT AAAAAGGAAT GAGATCATGT CGTTTGCAGG GACATGGATG GAGCTAGAAG CCATTATCCT 000480
000481 CAGAAAACTA ACACAGGAAC AGAAAACCAA ATACCACATG TTCTCACTTA TAAGTGGGAG CTGAATGATG AGAACACATG 000560
000561 GACACGTGGT GCGGGAACAA TACACCTGGG GCCTGTTGGA GGGTGGGGGC TGGGAGGAGG GAGAGCATCA AGAATAGCTA 000640
000641 ATGAGGCCAG GCACAGTGGC TCACGCCTGT AATCCTAGCA TTTTGGGAGG CTGAGGCGGG CAGATCATTT GAGGTCAGGA 000720
000721 GTTTGAGACC AGCCTGGCCA ATATGGTGAA ACCCCGTCTC TATTAAAAAT ACAAAAATAT TAGCCAGGCA TGGTGGCAAT 000800
000801 GCCCGTAGTC CCTGCAACTT GGGAGGCTGA GGCAGGAGAA TCGTTTGAAC CTGGGAGGTG GAGTTTGCAG TGAGCCAAGA 000880
000881 TCGCGCCACT GCACTCCAGC CTGGGCGACA GAGTGAGGCT C
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