Difference between revisions of "ENST00000416894.1"
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Section Description | Section Description | ||
ID LINC00568 | ID LINC00568 | ||
| − | Characteristics Spliced two exon transcript of ~550 nt in length ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 | + | Characteristics Spliced two exon transcript of ~550 nt in length ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. ~2kb downstream from 3'of Extracellular Matrix Protein 1 (ECM1), however a H3K4me3 peak at the TSS provides good evidence it is an independent transcript ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. In-vitro translation showed no sign of a protein product ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. |
| − | Expression ECM1 and LINC00568 are both upregulated during differentiation of primary human keratinocytes with TPA ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 | + | Expression ECM1 and LINC00568 are both upregulated during differentiation of primary human keratinocytes with TPA ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. LINC00568 identified as enriched in K562 and HepG2 nuclear fractions ([http://www.ncbi.nlm.nih.gov/pubmed/22955988 Derrien (2012))]. |
| − | Function LncRNA stimulates ECM1 gene expression (in HEK293 cells) ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 | + | Function LncRNA stimulates ECM1 gene expression (in HEK293 cells) ([http://www.ncbi.nlm.nih.gov/pubmed/20887892 Arom (2010))]. |
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Revision as of 10:29, 6 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000416894.1 |
| Source |
Gencode19 |
| Same with |
lnc-ECM1-1:1,NONHSAT006301 |
| Classification |
intergenic |
| Length |
566 nt |
| Genomic location |
chr1+:150488233..150490508 |
| Exon number |
2 |
| Exons |
150488233..150488538,150490249..150490508 |
| Genome context |
|
| Sequence |
000001 GCGCATCTCC TACGGCCTCC AGGACAGAGG AACCGGGGGA GGCAGGGGGA AAAGGCCGGC CCAGCAATTC CCCTACCCCC 000080
000081 CGGTCCCACG TGTACCCTCC TGGCCTGGGT CGCCCCAGCC CACGGGGAGC GGGCGGAGTC CTGGCCCACG AAGCCTTGTC 000160 000161 ACCTGGCGGG CGAATCCGCA AGCGGAGACT TGTCTTTAAA GGGCTTTGGG CCGGGCGCGG TGGCTCATGC CTGGAATCCC 000240 000241 AGCACTTTGG GAGGCCGAGG CGGTGGATCA CGAGGTCAGG AGTTCAAGAC CAGCCTGGCC AAGAAGCTCA TACTGACTAA 000320 000321 GGCAGCAGAA CATACAGGAG GAAGAGGAGC AGGTTTCACA GAGGGAAGAC ATGAGTTCAA TTTTGGACTT CTCAGTAGTC 000400 000401 GGTGTCCTCA GTGGTAGCAA CTTCAAACGG AAGGTGTCAA AAGTCAAATT CTGGAGAGTT GAGTATGAAT GGGAGATGAA 000480 000481 GAAAAGGAGG CAGCACTTGT AGCCTGCTCT TAATGTATTT CTGCACTCTA CACTAGCAGC CTATTACACA GGACACTTGG 000560 000561 ATGTCT |
Annotation (From lncRNAdb)
| Section | Description |
|---|---|
| ID | LINC00568 |
| Characteristics | Spliced two exon transcript of ~550 nt in length (Arom (2010)). ~2kb downstream from 3'of Extracellular Matrix Protein 1 (ECM1), however a H3K4me3 peak at the TSS provides good evidence it is an independent transcript (Arom (2010)). In-vitro translation showed no sign of a protein product (Arom (2010)). |
| Expression | ECM1 and LINC00568 are both upregulated during differentiation of primary human keratinocytes with TPA (Arom (2010)). LINC00568 identified as enriched in K562 and HepG2 nuclear fractions (Derrien (2012)). |
| Function | LncRNA stimulates ECM1 gene expression (in HEK293 cells) (Arom (2010)). |
