Difference between revisions of "NONHSAT034251"

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sequence = <dnaseq>ATCCTTCACCTGTTGCCTGGCTAGAGTTGTCTGGCTCCACTTTGAGCTCTTGCAGAACCAGCCCTTTTTCGTGTGGTCCAGGAAAGTCCATGCCTGGCACCACCTCCTCCTCTAGTGACTCCACGTAGAAGAGAGTCCTGGCTGGCTGCTGAGTGCCCTGCCCAGGAGCCCCTTGCTGCAGCCTCGTGGCAACTGGAAGCAGGGTGCCATTCAGCGGATTGAAGGAAGAGGAGGAAGAGGACGGGGAGGACGATGAAGAGGAAGAGGAGGAAGGCTTCTTCCAGAAAGTGCTCACACCGCTTCTCTCTTGGCTTTTGAGCAGGCGACTCTGGCTGGGTCCCCAGTGCTCAAAGCTGCCACTGCCGTCCTGTTGCAGGCAGCCTCCCCCCGCCGGGCCGCCGGTGGAAGGAGACGGGTGGCTGAAGAGTTTCCAGCGGAGTCGCAGAATGTGCTTCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTTTACGCACAGAAGGCAAAAGGCTGGCAGCTCACGCAGGATTCTGGAGGCTGGGAAGTTCAAGACCAATGCACGAGAATTTGGTCTAAAGAGAATCTTCTTGCTCTGAACACACATAGTAGAAGGCAGAAGGGCAAGAGAGAGAACAAAGTCTGTGTCTCCACATGGCAGAAGAGCAGAGGAGACAGAACCTACTCCTCTATGGCAACCACCCCATCAATGACAAAAATCCTAGAAGGATGTATGTATAGGAAGTTGAAGTGTTGAGAAGAGAATGGCTCAGAGTCAAGCGGGAACAAGATTCAAACTTCAGAGAGAGAGGGAAGAAAAACATTTAAATATATCTGGCATAATCCAAGACTATTTACGACAAGTGTTCTGTGTTTCTAATAATAAAACAGACTTCACCTCGGAGTACCTGCAGAACTGGGACCCCAATGACCAGGGAGAATGAAGAACAACTTGTTGAAGATTGCCTTTTCTGACTCCCAGCTTCCACGGAGAGATTAACTCTGTTGGCTGAAGCCCTATTCCCAATTCCTTGGCTAGACCCTGGGTCCTTCATGTTAGAAAACCTGGCTTTACTACTACTACTACTACTACTACTACTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCATTTTTTAAAAATATATTATCTTATTTTACTATTTGATGTTATAATTGTTATATATTTTTCCACACTTCCTCATACTGCTTATCTCTTACTTAAGAATTTATGAATAAAGAATTGATTTTTCAATACATCCTTCCAAAAATTATCTGATGTTGAGTTAGTTGCTCTCTCTTGTGCATTCTCAGTCCTCACAAGCCTTTCTCAAACACAATGTTTATCAAAGAAAATTGTAGCAACCAATATACTTAGTGGAATTTCTCACAGAGTTTGAGTGTAGGAAACAGTATTCACTGTATATTAGTCATTTTGCTCCCAATAGAAGGTGC</dnaseq>|
 
sequence = <dnaseq>ATCCTTCACCTGTTGCCTGGCTAGAGTTGTCTGGCTCCACTTTGAGCTCTTGCAGAACCAGCCCTTTTTCGTGTGGTCCAGGAAAGTCCATGCCTGGCACCACCTCCTCCTCTAGTGACTCCACGTAGAAGAGAGTCCTGGCTGGCTGCTGAGTGCCCTGCCCAGGAGCCCCTTGCTGCAGCCTCGTGGCAACTGGAAGCAGGGTGCCATTCAGCGGATTGAAGGAAGAGGAGGAAGAGGACGGGGAGGACGATGAAGAGGAAGAGGAGGAAGGCTTCTTCCAGAAAGTGCTCACACCGCTTCTCTCTTGGCTTTTGAGCAGGCGACTCTGGCTGGGTCCCCAGTGCTCAAAGCTGCCACTGCCGTCCTGTTGCAGGCAGCCTCCCCCCGCCGGGCCGCCGGTGGAAGGAGACGGGTGGCTGAAGAGTTTCCAGCGGAGTCGCAGAATGTGCTTCACATCGAAGTCTTTTCGCCCAGAGCCTGACATGCTTTACGCACAGAAGGCAAAAGGCTGGCAGCTCACGCAGGATTCTGGAGGCTGGGAAGTTCAAGACCAATGCACGAGAATTTGGTCTAAAGAGAATCTTCTTGCTCTGAACACACATAGTAGAAGGCAGAAGGGCAAGAGAGAGAACAAAGTCTGTGTCTCCACATGGCAGAAGAGCAGAGGAGACAGAACCTACTCCTCTATGGCAACCACCCCATCAATGACAAAAATCCTAGAAGGATGTATGTATAGGAAGTTGAAGTGTTGAGAAGAGAATGGCTCAGAGTCAAGCGGGAACAAGATTCAAACTTCAGAGAGAGAGGGAAGAAAAACATTTAAATATATCTGGCATAATCCAAGACTATTTACGACAAGTGTTCTGTGTTTCTAATAATAAAACAGACTTCACCTCGGAGTACCTGCAGAACTGGGACCCCAATGACCAGGGAGAATGAAGAACAACTTGTTGAAGATTGCCTTTTCTGACTCCCAGCTTCCACGGAGAGATTAACTCTGTTGGCTGAAGCCCTATTCCCAATTCCTTGGCTAGACCCTGGGTCCTTCATGTTAGAAAACCTGGCTTTACTACTACTACTACTACTACTACTACTACTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCATTTTTTAAAAATATATTATCTTATTTTACTATTTGATGTTATAATTGTTATATATTTTTCCACACTTCCTCATACTGCTTATCTCTTACTTAAGAATTTATGAATAAAGAATTGATTTTTCAATACATCCTTCCAAAAATTATCTGATGTTGAGTTAGTTGCTCTCTCTTGTGCATTCTCAGTCCTCACAAGCCTTTCTCAAACACAATGTTTATCAAAGAAAATTGTAGCAACCAATATACTTAGTGGAATTTCTCACAGAGTTTGAGTGTAGGAAACAGTATTCACTGTATATTAGTCATTTTGCTCCCAATAGAAGGTGC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG013730]]

Revision as of 10:24, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Name

Spinocerebellar ataxia 8 (SCA8) RNA

KLHL1AS: kelch-like 1 (Drosophila) antisense

ATXN8OS: ataxin 8 opposite strand

Characteristics

~1.5kb spliced transcript. Antisense to the KLHL1 gene (homolog of the Drosophila KELCH gene) in a bidirectional transcriptional orientation (overlapping in the first exon).

Function

Ectopic expression in Drosophila induces late-onset, progressive neurodegeneration in the retina.

Predicted gene product underpinning the triplet repeat expansion-induced neurodegenerative disease Spinocerebellar Ataxia 8.

Associates with the RNA binding protein staufen.

Expression

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Conservation

KLHL1AS promoter is conserved between human and mouse. However, the mouse gene is not spliced.

Misc

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Transcriptomic Nomeclature

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Regulation

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT034251

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1472 nt

Genomic location

chr13+:70681345..70713885

Exon number

5

Exons

70681345..70681873,70689273..70689430,70703916..70704016,70704810..70704980,70713373..70713885

Genome context

Sequence
000001 ATCCTTCACC TGTTGCCTGG CTAGAGTTGT CTGGCTCCAC TTTGAGCTCT TGCAGAACCA GCCCTTTTTC GTGTGGTCCA 000080
000081 GGAAAGTCCA TGCCTGGCAC CACCTCCTCC TCTAGTGACT CCACGTAGAA GAGAGTCCTG GCTGGCTGCT GAGTGCCCTG 000160
000161 CCCAGGAGCC CCTTGCTGCA GCCTCGTGGC AACTGGAAGC AGGGTGCCAT TCAGCGGATT GAAGGAAGAG GAGGAAGAGG 000240
000241 ACGGGGAGGA CGATGAAGAG GAAGAGGAGG AAGGCTTCTT CCAGAAAGTG CTCACACCGC TTCTCTCTTG GCTTTTGAGC 000320
000321 AGGCGACTCT GGCTGGGTCC CCAGTGCTCA AAGCTGCCAC TGCCGTCCTG TTGCAGGCAG CCTCCCCCCG CCGGGCCGCC 000400
000401 GGTGGAAGGA GACGGGTGGC TGAAGAGTTT CCAGCGGAGT CGCAGAATGT GCTTCACATC GAAGTCTTTT CGCCCAGAGC 000480
000481 CTGACATGCT TTACGCACAG AAGGCAAAAG GCTGGCAGCT CACGCAGGAT TCTGGAGGCT GGGAAGTTCA AGACCAATGC 000560
000561 ACGAGAATTT GGTCTAAAGA GAATCTTCTT GCTCTGAACA CACATAGTAG AAGGCAGAAG GGCAAGAGAG AGAACAAAGT 000640
000641 CTGTGTCTCC ACATGGCAGA AGAGCAGAGG AGACAGAACC TACTCCTCTA TGGCAACCAC CCCATCAATG ACAAAAATCC 000720
000721 TAGAAGGATG TATGTATAGG AAGTTGAAGT GTTGAGAAGA GAATGGCTCA GAGTCAAGCG GGAACAAGAT TCAAACTTCA 000800
000801 GAGAGAGAGG GAAGAAAAAC ATTTAAATAT ATCTGGCATA ATCCAAGACT ATTTACGACA AGTGTTCTGT GTTTCTAATA 000880
000881 ATAAAACAGA CTTCACCTCG GAGTACCTGC AGAACTGGGA CCCCAATGAC CAGGGAGAAT GAAGAACAAC TTGTTGAAGA 000960
000961 TTGCCTTTTC TGACTCCCAG CTTCCACGGA GAGATTAACT CTGTTGGCTG AAGCCCTATT CCCAATTCCT TGGCTAGACC 001040
001041 CTGGGTCCTT CATGTTAGAA AACCTGGCTT TACTACTACT ACTACTACTA CTACTACTAC TACTGCTGCT GCTGCTGCTG 001120
001121 CTGCTGCTGC TGCTGCTGCT GCTGCTGCAT TTTTTAAAAA TATATTATCT TATTTTACTA TTTGATGTTA TAATTGTTAT 001200
001201 ATATTTTTCC ACACTTCCTC ATACTGCTTA TCTCTTACTT AAGAATTTAT GAATAAAGAA TTGATTTTTC AATACATCCT 001280
001281 TCCAAAAATT ATCTGATGTT GAGTTAGTTG CTCTCTCTTG TGCATTCTCA GTCCTCACAA GCCTTTCTCA AACACAATGT 001360
001361 TTATCAAAGA AAATTGTAGC AACCAATATA CTTAGTGGAA TTTCTCACAG AGTTTGAGTG TAGGAAACAG TATTCACTGT 001440
001441 ATATTAGTCA TTTTGCTCCC AATAGAAGGT GC
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