Difference between revisions of "ENST00000520275.1"
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sequence = <dnaseq>GCTATATGCACAAGATGCTACCTGCAGAGATTGGTTTTTGCCCAGATGTGCAGGAGAGATGCACAGAGAGGAAGAAATGCATACATGTGTGCAGGTTTTGGCGTGTGCACAAGAAGCCTGGAAGGATTTTCTTTGGATCTACAGTCAAAATGGATTTCCGAGAGGAAGCTGTCTGAAAACACACCTCTTCCCTGTGCTACATACGGTCCCATCTCTGCCAGCCAGGTTGTCAGGAAAGTGATCAGCACTGGCTTCAACTCTGGCTAGAGCTCTTTGGCCAATGTGATGGGCAGAAAACTGGAATGAGGACAGAAAAGCACCTCAGAGGTTTGAAGAGTCTAGTCTCTCACCACCTTGCTGCTGAGACTTATTTGAATGCCTGTTTCATATGGAGCTTTTAAGTGTAACAGTTGTGAGTGAAATTGCCCCTTTTCAAGCGCTCCGAGTTTGCTTCTGCATGGAAGGGGAAGATGGACTAGAGCTGATACCTCCTG</dnaseq>| | sequence = <dnaseq>GCTATATGCACAAGATGCTACCTGCAGAGATTGGTTTTTGCCCAGATGTGCAGGAGAGATGCACAGAGAGGAAGAAATGCATACATGTGTGCAGGTTTTGGCGTGTGCACAAGAAGCCTGGAAGGATTTTCTTTGGATCTACAGTCAAAATGGATTTCCGAGAGGAAGCTGTCTGAAAACACACCTCTTCCCTGTGCTACATACGGTCCCATCTCTGCCAGCCAGGTTGTCAGGAAAGTGATCAGCACTGGCTTCAACTCTGGCTAGAGCTCTTTGGCCAATGTGATGGGCAGAAAACTGGAATGAGGACAGAAAAGCACCTCAGAGGTTTGAAGAGTCTAGTCTCTCACCACCTTGCTGCTGAGACTTATTTGAATGCCTGTTTCATATGGAGCTTTTAAGTGTAACAGTTGTGAGTGAAATTGCCCCTTTTCAAGCGCTCCGAGTTTGCTTCTGCATGGAAGGGGAAGATGGACTAGAGCTGATACCTCCTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-LCP2-2]] | + | [[Category:Intergenic]][[Category:lnc-LCP2-2]][[Category:NONHSAG042192]] |
Revision as of 05:44, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000520275.1 |
| Source |
Gencode19 |
| Same with |
lnc-LCP2-2:5,NONHSAT105038 |
| Classification |
intergenic |
| Length |
494 nt |
| Genomic location |
chr5-:169623579..169626104 |
| Exon number |
3 |
| Exons |
169623579..169623635,169624756..169624833,169625746..169626104 |
| Genome context |
|
| Sequence |
000001 GCTATATGCA CAAGATGCTA CCTGCAGAGA TTGGTTTTTG CCCAGATGTG CAGGAGAGAT GCACAGAGAG GAAGAAATGC 000080
000081 ATACATGTGT GCAGGTTTTG GCGTGTGCAC AAGAAGCCTG GAAGGATTTT CTTTGGATCT ACAGTCAAAA TGGATTTCCG 000160 000161 AGAGGAAGCT GTCTGAAAAC ACACCTCTTC CCTGTGCTAC ATACGGTCCC ATCTCTGCCA GCCAGGTTGT CAGGAAAGTG 000240 000241 ATCAGCACTG GCTTCAACTC TGGCTAGAGC TCTTTGGCCA ATGTGATGGG CAGAAAACTG GAATGAGGAC AGAAAAGCAC 000320 000321 CTCAGAGGTT TGAAGAGTCT AGTCTCTCAC CACCTTGCTG CTGAGACTTA TTTGAATGCC TGTTTCATAT GGAGCTTTTA 000400 000401 AGTGTAACAG TTGTGAGTGA AATTGCCCCT TTTCAAGCGC TCCGAGTTTG CTTCTGCATG GAAGGGGAAG ATGGACTAGA 000480 000481 GCTGATACCT CCTG |
Predicted Small Protein
| Name | ENST00000520275.1_smProtein_5:175 |
| Length | 57 |
| Molecular weight | 6709.9195 |
| Aromaticity | 0.107142857143 |
| Instability index | 70.0785714286 |
| Isoelectric point | 9.38177490234 |
| Runs | 11 |
| Runs residual | 0.0431303669009 |
| Runs probability | 0.0167172520114 |
| Amino acid sequence | MHKMLPAEIGFCPDVQERCTERKKCIHVCRFWRVHKKPGRIFFGSTVKMDFREEAV |
| Secondary structure | LLLLLLLLLLLLLLHHHHHHLLLEEEEEEEEEEEELLLLEEEELLEEEELLLEELL |
| PRMN | - |
| PiMo | - |
