Difference between revisions of "NONHSAT022872"
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sequence = <dnaseq>AAAGTTTGCAAATTTTCATATGAGCATCTGGACAACTTTTTTAAAGACCTACAAAACGTTCAAAACACTGGTGAAAAAGAAGTACAGAATAGAGAGAAATTTTGATCAGGCACTTACTCTGAAAAGCACAACACTGTGTCTGTGTCTCAGTGATGTGGTCACACAACCAAAACAACCCAACTGTGGTTTTCTTCTCAGTATCTTACACTGTGAAAGCCTTCTTGATTTGGAACCTGTGACTTGCAGCAGAGTTCTAAACAAGAATTGTATATTGCTTGTTTCATGGCTCCTCTCACCAATGAATCCAAATCCATCAGAGTAGAGCTCCTCAGCATATTAGACCAGTTATCCAGAAGTCATCCCCAGAAGTCATATCCCCGTTTCTTTTACTTTCCAAAGGTACAAGATCTCAAAAACTGTCAAGATATATTTCACCATTGTTATTCTTGCTATATTATTATTATGTCTTGGAGTTATGATCCTTGAAGTAATTCATGCTTCACATGTGCTTACAATGTTGAATGATGGGATGAGAGAAATCTTTTCCATTTGATAAAATAAAACCACAAGGAGGGTTTGCTTGTGTCGTATGGGTGCCCATAAAGCATTGAAAATATTAAGGAGCAAAGTGGATTTGCAGGATTTCTGTGGATATGTCACTATGCTGTACCATCTCATCAACGCAAACAGAAAGTGTGGTGATGCTTCTGATGAAAAAGGAAAACCTGATTTGACTTCCTGCTTTGAGCAGATGAGAGGACAGAGTCATTTGAAATGGTCATTGAGGAAGCAACCACAGATTCAACAACATAACAGAAATCTTAGGTTGCTACAACAGAAACAGACTGGGTTCCTCTTGAGCTATGCTTGTAATTCCACTGTTTAGCTCTGAATTCAATGAGTTTGTAGGAAAACAGTCACACTACAAACCTTGCAGAAAAGAAAGCCTTCAAAAACTCTTACTTTCCAGTAGAAAACTATATATGTTCTTAACTTTATTCACTCATTCTAGGAAGTTGCTTTAACACTAGATATTCACATTCAGGCTGGTTTTTCCAGTTTTCTTTACCTAAATCTTAAGTTCTACTTCTTGAAAAGAATGTAATGTGTAGAGATGGCATCTTATCAGAATGGAGAGATGGTCACCTTCCTCACTTCTCTCTGCTAATCTTCATTGGTA</dnaseq>| | sequence = <dnaseq>AAAGTTTGCAAATTTTCATATGAGCATCTGGACAACTTTTTTAAAGACCTACAAAACGTTCAAAACACTGGTGAAAAAGAAGTACAGAATAGAGAGAAATTTTGATCAGGCACTTACTCTGAAAAGCACAACACTGTGTCTGTGTCTCAGTGATGTGGTCACACAACCAAAACAACCCAACTGTGGTTTTCTTCTCAGTATCTTACACTGTGAAAGCCTTCTTGATTTGGAACCTGTGACTTGCAGCAGAGTTCTAAACAAGAATTGTATATTGCTTGTTTCATGGCTCCTCTCACCAATGAATCCAAATCCATCAGAGTAGAGCTCCTCAGCATATTAGACCAGTTATCCAGAAGTCATCCCCAGAAGTCATATCCCCGTTTCTTTTACTTTCCAAAGGTACAAGATCTCAAAAACTGTCAAGATATATTTCACCATTGTTATTCTTGCTATATTATTATTATGTCTTGGAGTTATGATCCTTGAAGTAATTCATGCTTCACATGTGCTTACAATGTTGAATGATGGGATGAGAGAAATCTTTTCCATTTGATAAAATAAAACCACAAGGAGGGTTTGCTTGTGTCGTATGGGTGCCCATAAAGCATTGAAAATATTAAGGAGCAAAGTGGATTTGCAGGATTTCTGTGGATATGTCACTATGCTGTACCATCTCATCAACGCAAACAGAAAGTGTGGTGATGCTTCTGATGAAAAAGGAAAACCTGATTTGACTTCCTGCTTTGAGCAGATGAGAGGACAGAGTCATTTGAAATGGTCATTGAGGAAGCAACCACAGATTCAACAACATAACAGAAATCTTAGGTTGCTACAACAGAAACAGACTGGGTTCCTCTTGAGCTATGCTTGTAATTCCACTGTTTAGCTCTGAATTCAATGAGTTTGTAGGAAAACAGTCACACTACAAACCTTGCAGAAAAGAAAGCCTTCAAAAACTCTTACTTTCCAGTAGAAAACTATATATGTTCTTAACTTTATTCACTCATTCTAGGAAGTTGCTTTAACACTAGATATTCACATTCAGGCTGGTTTTTCCAGTTTTCTTTACCTAAATCTTAAGTTCTACTTCTTGAAAAGAATGTAATGTGTAGAGATGGCATCTTATCAGAATGGAGAGATGGTCACCTTCCTCACTTCTCTCTGCTAATCTTCATTGGTA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG009042]] | + | [[Category:Intergenic]][[Category:NONHSAG009042]][[Category:Transcripts]] |
Latest revision as of 20:39, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT022872 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1180 nt |
| Genomic location |
chr11-:73706017..73707196 |
| Exon number |
1 |
| Exons |
73706017..73707196 |
| Genome context |
|
| Sequence |
000001 AAAGTTTGCA AATTTTCATA TGAGCATCTG GACAACTTTT TTAAAGACCT ACAAAACGTT CAAAACACTG GTGAAAAAGA 000080
000081 AGTACAGAAT AGAGAGAAAT TTTGATCAGG CACTTACTCT GAAAAGCACA ACACTGTGTC TGTGTCTCAG TGATGTGGTC 000160 000161 ACACAACCAA AACAACCCAA CTGTGGTTTT CTTCTCAGTA TCTTACACTG TGAAAGCCTT CTTGATTTGG AACCTGTGAC 000240 000241 TTGCAGCAGA GTTCTAAACA AGAATTGTAT ATTGCTTGTT TCATGGCTCC TCTCACCAAT GAATCCAAAT CCATCAGAGT 000320 000321 AGAGCTCCTC AGCATATTAG ACCAGTTATC CAGAAGTCAT CCCCAGAAGT CATATCCCCG TTTCTTTTAC TTTCCAAAGG 000400 000401 TACAAGATCT CAAAAACTGT CAAGATATAT TTCACCATTG TTATTCTTGC TATATTATTA TTATGTCTTG GAGTTATGAT 000480 000481 CCTTGAAGTA ATTCATGCTT CACATGTGCT TACAATGTTG AATGATGGGA TGAGAGAAAT CTTTTCCATT TGATAAAATA 000560 000561 AAACCACAAG GAGGGTTTGC TTGTGTCGTA TGGGTGCCCA TAAAGCATTG AAAATATTAA GGAGCAAAGT GGATTTGCAG 000640 000641 GATTTCTGTG GATATGTCAC TATGCTGTAC CATCTCATCA ACGCAAACAG AAAGTGTGGT GATGCTTCTG ATGAAAAAGG 000720 000721 AAAACCTGAT TTGACTTCCT GCTTTGAGCA GATGAGAGGA CAGAGTCATT TGAAATGGTC ATTGAGGAAG CAACCACAGA 000800 000801 TTCAACAACA TAACAGAAAT CTTAGGTTGC TACAACAGAA ACAGACTGGG TTCCTCTTGA GCTATGCTTG TAATTCCACT 000880 000881 GTTTAGCTCT GAATTCAATG AGTTTGTAGG AAAACAGTCA CACTACAAAC CTTGCAGAAA AGAAAGCCTT CAAAAACTCT 000960 000961 TACTTTCCAG TAGAAAACTA TATATGTTCT TAACTTTATT CACTCATTCT AGGAAGTTGC TTTAACACTA GATATTCACA 001040 001041 TTCAGGCTGG TTTTTCCAGT TTTCTTTACC TAAATCTTAA GTTCTACTTC TTGAAAAGAA TGTAATGTGT AGAGATGGCA 001120 001121 TCTTATCAGA ATGGAGAGAT GGTCACCTTC CTCACTTCTC TCTGCTAATC TTCATTGGTA |
Predicted Small Protein
| Name | NONHSAT022872_smProtein_863:1024 |
| Length | 54 |
| Molecular weight | 6334.5219 |
| Aromaticity | 0.132075471698 |
| Instability index | 55.7 |
| Isoelectric point | 10.012878418 |
| Runs | 7 |
| Runs residual | 0.0281868384722 |
| Runs probability | 0.0390264213795 |
| Amino acid sequence | MLVIPLFSSEFNEFVGKQSHYKPCRKESLQKLLLSSRKLYMFLTLFTHSRKLL |
| Secondary structure | LEEEELLLLHHHHHLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
