Difference between revisions of "NONHSAT023199"
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sequence = <dnaseq>catttacagcatggtttactgaatattttgagtagatgctcaaaaaaaaaACAGTTGCTGAACAAATGAAGCATATACTCATGTTGTTTTTGCTTCGTACATGCAGAAGCACTATGGTTACGTTTGTCAGTACGCCAGTTTGCATGAATTCAAAATGAATCTGAAAAGCTTTCCCCCTCCCACTTTTCTTTCAGTTTGTATACAAGAACACTTTACCTGAGATATAGGCCAAAAGTGAAGTTTCTCTTTGGAATCTGGCCAGTGATCCTGTTTGAGCCTCTCAGGAAGCATTGATGAATCATTCCACCAAGAAAACAAACAAGCACCTACCATAGACCTGGCAGAATAAATAAGGAAATCCTTAAAGATCTACAAGTTCAAATATGTCATGACCATCACAGCAGAGGAGTGACTTTCTGACTAATGCTGCCACCCACACAGAGAATAAGGAGTAGGGCCTGCTGGGTGTTTAGCTCATGGCTTTATCTTATTTGTCCCCCTCCTCCTTTCACGCTCCAGTTTATAAAGAAACAGAGATGATGTGTGTGTATGCCTCAAATGCAGAAA</dnaseq>| | sequence = <dnaseq>catttacagcatggtttactgaatattttgagtagatgctcaaaaaaaaaACAGTTGCTGAACAAATGAAGCATATACTCATGTTGTTTTTGCTTCGTACATGCAGAAGCACTATGGTTACGTTTGTCAGTACGCCAGTTTGCATGAATTCAAAATGAATCTGAAAAGCTTTCCCCCTCCCACTTTTCTTTCAGTTTGTATACAAGAACACTTTACCTGAGATATAGGCCAAAAGTGAAGTTTCTCTTTGGAATCTGGCCAGTGATCCTGTTTGAGCCTCTCAGGAAGCATTGATGAATCATTCCACCAAGAAAACAAACAAGCACCTACCATAGACCTGGCAGAATAAATAAGGAAATCCTTAAAGATCTACAAGTTCAAATATGTCATGACCATCACAGCAGAGGAGTGACTTTCTGACTAATGCTGCCACCCACACAGAGAATAAGGAGTAGGGCCTGCTGGGTGTTTAGCTCATGGCTTTATCTTATTTGTCCCCCTCCTCCTTTCACGCTCCAGTTTATAAAGAAACAGAGATGATGTGTGTGTATGCCTCAAATGCAGAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG009144]] | + | [[Category:Sense]][[Category:NONHSAG009144]][[Category:Transcripts]] |
Revision as of 11:29, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023199 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
567 nt |
Genomic location |
chr11+:76730581..76731644 |
Exon number |
2 |
Exons |
76730581..76730820,76731318..76731644 |
Genome context |
|
Sequence |
000001 catttacagc atggtttact gaatattttg agtagatgct caaaaaaaaa ACAGTTGCTG AACAAATGAA GCATATACTC 000080
000081 ATGTTGTTTT TGCTTCGTAC ATGCAGAAGC ACTATGGTTA CGTTTGTCAG TACGCCAGTT TGCATGAATT CAAAATGAAT 000160 000161 CTGAAAAGCT TTCCCCCTCC CACTTTTCTT TCAGTTTGTA TACAAGAACA CTTTACCTGA GATATAGGCC AAAAGTGAAG 000240 000241 TTTCTCTTTG GAATCTGGCC AGTGATCCTG TTTGAGCCTC TCAGGAAGCA TTGATGAATC ATTCCACCAA GAAAACAAAC 000320 000321 AAGCACCTAC CATAGACCTG GCAGAATAAA TAAGGAAATC CTTAAAGATC TACAAGTTCA AATATGTCAT GACCATCACA 000400 000401 GCAGAGGAGT GACTTTCTGA CTAATGCTGC CACCCACACA GAGAATAAGG AGTAGGGCCT GCTGGGTGTT TAGCTCATGG 000480 000481 CTTTATCTTA TTTGTCCCCC TCCTCCTTTC ACGCTCCAGT TTATAAAGAA ACAGAGATGA TGTGTGTGTA TGCCTCAAAT 000560 000561 GCAGAAA |
Predicted Small Protein
Name | NONHSAT023199_smProtein_35:157 |
Length | 41 |
Molecular weight | 4646.7608 |
Aromaticity | 0.05 |
Instability index | 57.97 |
Isoelectric point | 10.2073364258 |
Runs | 7 |
Runs residual | 0.00302419354839 |
Runs probability | 0.00792389027683 |
Amino acid sequence | MLKKKTVAEQMKHILMLFLLRTCRSTMVTFVSTPVCMNSK |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHLLEEEEEELLEEELLL |
PRMN | - |
PiMo | - |