Difference between revisions of "NONHSAT023199"

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sequence = <dnaseq>catttacagcatggtttactgaatattttgagtagatgctcaaaaaaaaaACAGTTGCTGAACAAATGAAGCATATACTCATGTTGTTTTTGCTTCGTACATGCAGAAGCACTATGGTTACGTTTGTCAGTACGCCAGTTTGCATGAATTCAAAATGAATCTGAAAAGCTTTCCCCCTCCCACTTTTCTTTCAGTTTGTATACAAGAACACTTTACCTGAGATATAGGCCAAAAGTGAAGTTTCTCTTTGGAATCTGGCCAGTGATCCTGTTTGAGCCTCTCAGGAAGCATTGATGAATCATTCCACCAAGAAAACAAACAAGCACCTACCATAGACCTGGCAGAATAAATAAGGAAATCCTTAAAGATCTACAAGTTCAAATATGTCATGACCATCACAGCAGAGGAGTGACTTTCTGACTAATGCTGCCACCCACACAGAGAATAAGGAGTAGGGCCTGCTGGGTGTTTAGCTCATGGCTTTATCTTATTTGTCCCCCTCCTCCTTTCACGCTCCAGTTTATAAAGAAACAGAGATGATGTGTGTGTATGCCTCAAATGCAGAAA</dnaseq>|
 
sequence = <dnaseq>catttacagcatggtttactgaatattttgagtagatgctcaaaaaaaaaACAGTTGCTGAACAAATGAAGCATATACTCATGTTGTTTTTGCTTCGTACATGCAGAAGCACTATGGTTACGTTTGTCAGTACGCCAGTTTGCATGAATTCAAAATGAATCTGAAAAGCTTTCCCCCTCCCACTTTTCTTTCAGTTTGTATACAAGAACACTTTACCTGAGATATAGGCCAAAAGTGAAGTTTCTCTTTGGAATCTGGCCAGTGATCCTGTTTGAGCCTCTCAGGAAGCATTGATGAATCATTCCACCAAGAAAACAAACAAGCACCTACCATAGACCTGGCAGAATAAATAAGGAAATCCTTAAAGATCTACAAGTTCAAATATGTCATGACCATCACAGCAGAGGAGTGACTTTCTGACTAATGCTGCCACCCACACAGAGAATAAGGAGTAGGGCCTGCTGGGTGTTTAGCTCATGGCTTTATCTTATTTGTCCCCCTCCTCCTTTCACGCTCCAGTTTATAAAGAAACAGAGATGATGTGTGTGTATGCCTCAAATGCAGAAA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG009144]]
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[[Category:Sense]][[Category:NONHSAG009144]][[Category:Transcripts]]

Revision as of 11:29, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT023199

Source

NONCODE4.0

Same with

,

Classification

sense

Length

567 nt

Genomic location

chr11+:76730581..76731644

Exon number

2

Exons

76730581..76730820,76731318..76731644

Genome context

Sequence
000001 catttacagc atggtttact gaatattttg agtagatgct caaaaaaaaa ACAGTTGCTG AACAAATGAA GCATATACTC 000080
000081 ATGTTGTTTT TGCTTCGTAC ATGCAGAAGC ACTATGGTTA CGTTTGTCAG TACGCCAGTT TGCATGAATT CAAAATGAAT 000160
000161 CTGAAAAGCT TTCCCCCTCC CACTTTTCTT TCAGTTTGTA TACAAGAACA CTTTACCTGA GATATAGGCC AAAAGTGAAG 000240
000241 TTTCTCTTTG GAATCTGGCC AGTGATCCTG TTTGAGCCTC TCAGGAAGCA TTGATGAATC ATTCCACCAA GAAAACAAAC 000320
000321 AAGCACCTAC CATAGACCTG GCAGAATAAA TAAGGAAATC CTTAAAGATC TACAAGTTCA AATATGTCAT GACCATCACA 000400
000401 GCAGAGGAGT GACTTTCTGA CTAATGCTGC CACCCACACA GAGAATAAGG AGTAGGGCCT GCTGGGTGTT TAGCTCATGG 000480
000481 CTTTATCTTA TTTGTCCCCC TCCTCCTTTC ACGCTCCAGT TTATAAAGAA ACAGAGATGA TGTGTGTGTA TGCCTCAAAT 000560
000561 GCAGAAA
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Predicted Small Protein

Name NONHSAT023199_smProtein_35:157
Length 41
Molecular weight 4646.7608
Aromaticity 0.05
Instability index 57.97
Isoelectric point 10.2073364258
Runs 7
Runs residual 0.00302419354839
Runs probability 0.00792389027683
Amino acid sequence MLKKKTVAEQMKHILMLFLLRTCRSTMVTFVSTPVCMNSK
Secondary structure LLLHHHHHHHHHHHHHHHHHHHHHLLEEEEEELLEEELLL
PRMN -
PiMo -