Difference between revisions of "NONHSAT023506"
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sequence = <dnaseq>TTGCTTTCCTCCCACCCGGATCTAGGCGCGCAGGGGCCAAGCAGGGACGCAGCCCAGTGGCTCCAGCCACGCCGTCCTGCCCCCTTCTGCAGAAACTGATGCTCTGAGAGGCCAAGCAGTTTGCCCAAGATTACACAGTCATAGCCGTGCCTGGGAGAACCTTCTCTTCAACTCTGCCGCACCACTGTCAAGCTCACCTTTCTTCTAAGGTTTTATTTTAGAGTTAACATCCTCCAAAAAGCCTTCCTCAGGAGTTGAAGGTGCCCCTAATATCACAGCCATGGCATCCTGTACACTGGACCTTATTGTCTGTCTGCCTGTTGTACCTTGTATGAGTCTATAAGCAAAACCTATAAGAAGCCACATCTGGCTATTCTATGTACTCAAAAAATAATTGGCAAGTGAAAGAATGAGGAAAAGGAGAAAAAATTCAGAAGGCCCCTACCCCTTCCAATGGGTCAAGTCAGGAATTTCCTACCTGCATGTGATTCCCTGTGTCCTAGAGGGTTTTATTTACTCCTCAGACCTTGGAAACTGTTAACCAGAGTCTCTGTTTGGAGATCTTATCTGTGTGCTTCTCCATGGGTGTTGTTTCCCTGTCTCTGCAGCCATGCATTCCTCAGCTCTTTAAGTGGTGGAGCCTGTCTGCCTGGATAGAGTGCAAAAGCTACAGTGTAATCTTGCTTTCTTTCAGGGCCACTGACCAGAGGAAATAAAAACTGGACTGATTGGGCTCTCCTGATGTAGACCAGCCAGTGGCCCTCTAAGTTTCCTTCTATGTTTAAAATTCCTTATCTGACATTGCTAGCTGATCAGCAGGCCCACAGGTCAGCTGAGGGCTTATCTCCAGGGCTGGAGCTTCAAAGAGATACATGCACACGACTCCCCTGGGTCAGATGGGCTGTGTCACAGTGAGTTGGGGATAATTTGGGATCAGTCAACATAACACACATAACACAACCCATTAATTTTTTTTTTCAAAAAGCGAAGTTTATTTTACTTTTTCCCATTATGAAAGTCATCAATGCTCATTATAGAAAATTTGGCAAATAACAAAAAGTGGAAAGAAAAAAATTCCTTAATAATTTAGTATATTTGATATATTCATCCTTAATCCTTAATCTTTTACTATGTTATATCTTTAATAGTTGTGATGATATACTTTTTGTAATAAATATATATTTGTGTTGTGGCTTTTTTAAAATTT</dnaseq>| | sequence = <dnaseq>TTGCTTTCCTCCCACCCGGATCTAGGCGCGCAGGGGCCAAGCAGGGACGCAGCCCAGTGGCTCCAGCCACGCCGTCCTGCCCCCTTCTGCAGAAACTGATGCTCTGAGAGGCCAAGCAGTTTGCCCAAGATTACACAGTCATAGCCGTGCCTGGGAGAACCTTCTCTTCAACTCTGCCGCACCACTGTCAAGCTCACCTTTCTTCTAAGGTTTTATTTTAGAGTTAACATCCTCCAAAAAGCCTTCCTCAGGAGTTGAAGGTGCCCCTAATATCACAGCCATGGCATCCTGTACACTGGACCTTATTGTCTGTCTGCCTGTTGTACCTTGTATGAGTCTATAAGCAAAACCTATAAGAAGCCACATCTGGCTATTCTATGTACTCAAAAAATAATTGGCAAGTGAAAGAATGAGGAAAAGGAGAAAAAATTCAGAAGGCCCCTACCCCTTCCAATGGGTCAAGTCAGGAATTTCCTACCTGCATGTGATTCCCTGTGTCCTAGAGGGTTTTATTTACTCCTCAGACCTTGGAAACTGTTAACCAGAGTCTCTGTTTGGAGATCTTATCTGTGTGCTTCTCCATGGGTGTTGTTTCCCTGTCTCTGCAGCCATGCATTCCTCAGCTCTTTAAGTGGTGGAGCCTGTCTGCCTGGATAGAGTGCAAAAGCTACAGTGTAATCTTGCTTTCTTTCAGGGCCACTGACCAGAGGAAATAAAAACTGGACTGATTGGGCTCTCCTGATGTAGACCAGCCAGTGGCCCTCTAAGTTTCCTTCTATGTTTAAAATTCCTTATCTGACATTGCTAGCTGATCAGCAGGCCCACAGGTCAGCTGAGGGCTTATCTCCAGGGCTGGAGCTTCAAAGAGATACATGCACACGACTCCCCTGGGTCAGATGGGCTGTGTCACAGTGAGTTGGGGATAATTTGGGATCAGTCAACATAACACACATAACACAACCCATTAATTTTTTTTTTCAAAAAGCGAAGTTTATTTTACTTTTTCCCATTATGAAAGTCATCAATGCTCATTATAGAAAATTTGGCAAATAACAAAAAGTGGAAAGAAAAAAATTCCTTAATAATTTAGTATATTTGATATATTCATCCTTAATCCTTAATCTTTTACTATGTTATATCTTTAATAGTTGTGATGATATACTTTTTGTAATAAATATATATTTGTGTTGTGGCTTTTTTAAAATTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG009285]] | + | [[Category:Intergenic]][[Category:NONHSAG009285]][[Category:Transcripts]] |
Revision as of 09:34, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023506 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1207 nt |
Genomic location |
chr11+:86666661..86712001 |
Exon number |
3 |
Exons |
86666661..86666754,86669024..86669068,86710918..86712001 |
Genome context |
|
Sequence |
000001 TTGCTTTCCT CCCACCCGGA TCTAGGCGCG CAGGGGCCAA GCAGGGACGC AGCCCAGTGG CTCCAGCCAC GCCGTCCTGC 000080
000081 CCCCTTCTGC AGAAACTGAT GCTCTGAGAG GCCAAGCAGT TTGCCCAAGA TTACACAGTC ATAGCCGTGC CTGGGAGAAC 000160 000161 CTTCTCTTCA ACTCTGCCGC ACCACTGTCA AGCTCACCTT TCTTCTAAGG TTTTATTTTA GAGTTAACAT CCTCCAAAAA 000240 000241 GCCTTCCTCA GGAGTTGAAG GTGCCCCTAA TATCACAGCC ATGGCATCCT GTACACTGGA CCTTATTGTC TGTCTGCCTG 000320 000321 TTGTACCTTG TATGAGTCTA TAAGCAAAAC CTATAAGAAG CCACATCTGG CTATTCTATG TACTCAAAAA ATAATTGGCA 000400 000401 AGTGAAAGAA TGAGGAAAAG GAGAAAAAAT TCAGAAGGCC CCTACCCCTT CCAATGGGTC AAGTCAGGAA TTTCCTACCT 000480 000481 GCATGTGATT CCCTGTGTCC TAGAGGGTTT TATTTACTCC TCAGACCTTG GAAACTGTTA ACCAGAGTCT CTGTTTGGAG 000560 000561 ATCTTATCTG TGTGCTTCTC CATGGGTGTT GTTTCCCTGT CTCTGCAGCC ATGCATTCCT CAGCTCTTTA AGTGGTGGAG 000640 000641 CCTGTCTGCC TGGATAGAGT GCAAAAGCTA CAGTGTAATC TTGCTTTCTT TCAGGGCCAC TGACCAGAGG AAATAAAAAC 000720 000721 TGGACTGATT GGGCTCTCCT GATGTAGACC AGCCAGTGGC CCTCTAAGTT TCCTTCTATG TTTAAAATTC CTTATCTGAC 000800 000801 ATTGCTAGCT GATCAGCAGG CCCACAGGTC AGCTGAGGGC TTATCTCCAG GGCTGGAGCT TCAAAGAGAT ACATGCACAC 000880 000881 GACTCCCCTG GGTCAGATGG GCTGTGTCAC AGTGAGTTGG GGATAATTTG GGATCAGTCA ACATAACACA CATAACACAA 000960 000961 CCCATTAATT TTTTTTTTCA AAAAGCGAAG TTTATTTTAC TTTTTCCCAT TATGAAAGTC ATCAATGCTC ATTATAGAAA 001040 001041 ATTTGGCAAA TAACAAAAAG TGGAAAGAAA AAAATTCCTT AATAATTTAG TATATTTGAT ATATTCATCC TTAATCCTTA 001120 001121 ATCTTTTACT ATGTTATATC TTTAATAGTT GTGATGATAT ACTTTTTGTA ATAAATATAT ATTTGTGTTG TGGCTTTTTT 001200 001201 AAAATTT |
Predicted Small Protein
Name | NONHSAT023506_smProtein_581:715 |
Length | 45 |
Molecular weight | 5117.0188 |
Aromaticity | 0.136363636364 |
Instability index | 44.5022727273 |
Isoelectric point | 9.30145263672 |
Runs | 9 |
Runs residual | 0.0414438502674 |
Runs probability | 0.0290388427644 |
Amino acid sequence | MGVVSLSLQPCIPQLFKWWSLSAWIECKSYSVILLSFRATDQRK |
Secondary structure | LLEEEELLLLLHHHHHHHHHHLLEEEELLEEEEEEEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | ooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii |