Difference between revisions of "NONHSAT049647"

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sequence = <dnaseq>CTGCTAATAGACTAATAGAAGCATCTTTGTTGCAGCCAATCACCTCTAGCCTGGGAACACCGCTAGTCAGGAGGCCTCAATCAACCTGAGAAGTCAGCCCAAGGCCCTGTCTCCAGAAGCCAGCAGCAGATCCCTGGGTCATGTCACAGGCAAGTCCTCACTTCACCAGCTCAGAGGATGACACTGGGTTACAACCATCCCACACGAGGAGAGTGACATGTCCCAACTTGCTTCTGGCCCATGTTTTACAAGAAGCTTGTCCGGCAGGCAAAATAGCCCTCAACACAGGAACACCTGTTGCAGCACCTGTCAGTAGCGTCTGGCACCCTGGCAGCTGACGTCTCAGTGCAGCCGGCAAGGACACTCTGGGAAGAGGACGCAGTGGCCTTATGAGTGAACGACGGAGAAGCCGGAGGGAGGAGGCCTGGCCTGTCTGCCTTGGAAGCTAATGATGCCCATTGTTTCTATACCCACCGCCCAGGCAGCTGTCCATCTGCCGATGCTCCTAACAGTTCGCCCTCAGAAGACCACGAGGAAGCCTGGGGTGCCTGGCCATTCAGAGGTCCTCAGTACACGGAcatcccttggtatcctcagagaattggttccaa</dnaseq>|
 
sequence = <dnaseq>CTGCTAATAGACTAATAGAAGCATCTTTGTTGCAGCCAATCACCTCTAGCCTGGGAACACCGCTAGTCAGGAGGCCTCAATCAACCTGAGAAGTCAGCCCAAGGCCCTGTCTCCAGAAGCCAGCAGCAGATCCCTGGGTCATGTCACAGGCAAGTCCTCACTTCACCAGCTCAGAGGATGACACTGGGTTACAACCATCCCACACGAGGAGAGTGACATGTCCCAACTTGCTTCTGGCCCATGTTTTACAAGAAGCTTGTCCGGCAGGCAAAATAGCCCTCAACACAGGAACACCTGTTGCAGCACCTGTCAGTAGCGTCTGGCACCCTGGCAGCTGACGTCTCAGTGCAGCCGGCAAGGACACTCTGGGAAGAGGACGCAGTGGCCTTATGAGTGAACGACGGAGAAGCCGGAGGGAGGAGGCCTGGCCTGTCTGCCTTGGAAGCTAATGATGCCCATTGTTTCTATACCCACCGCCCAGGCAGCTGTCCATCTGCCGATGCTCCTAACAGTTCGCCCTCAGAAGACCACGAGGAAGCCTGGGGTGCCTGGCCATTCAGAGGTCCTCAGTACACGGAcatcccttggtatcctcagagaattggttccaa</dnaseq>|
 
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[[Category:Antisense]][[Category:NONHSAG017939]]
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[[Category:Antisense]][[Category:NONHSAG017939]][[Category:Transcripts]]

Latest revision as of 22:08, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT049647

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

611 nt

Genomic location

chr15+:93161453..93171193

Exon number

4

Exons

93161453..93161628,93166735..93166993,93167515..93167648,93171152..93171193

Genome context

Sequence
000001 CTGCTAATAG ACTAATAGAA GCATCTTTGT TGCAGCCAAT CACCTCTAGC CTGGGAACAC CGCTAGTCAG GAGGCCTCAA 000080
000081 TCAACCTGAG AAGTCAGCCC AAGGCCCTGT CTCCAGAAGC CAGCAGCAGA TCCCTGGGTC ATGTCACAGG CAAGTCCTCA 000160
000161 CTTCACCAGC TCAGAGGATG ACACTGGGTT ACAACCATCC CACACGAGGA GAGTGACATG TCCCAACTTG CTTCTGGCCC 000240
000241 ATGTTTTACA AGAAGCTTGT CCGGCAGGCA AAATAGCCCT CAACACAGGA ACACCTGTTG CAGCACCTGT CAGTAGCGTC 000320
000321 TGGCACCCTG GCAGCTGACG TCTCAGTGCA GCCGGCAAGG ACACTCTGGG AAGAGGACGC AGTGGCCTTA TGAGTGAACG 000400
000401 ACGGAGAAGC CGGAGGGAGG AGGCCTGGCC TGTCTGCCTT GGAAGCTAAT GATGCCCATT GTTTCTATAC CCACCGCCCA 000480
000481 GGCAGCTGTC CATCTGCCGA TGCTCCTAAC AGTTCGCCCT CAGAAGACCA CGAGGAAGCC TGGGGTGCCT GGCCATTCAG 000560
000561 AGGTCCTCAG TACACGGAca tcccttggta tcctcagaga attggttcca a
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Predicted Small Protein

Name NONHSAT049647_smProtein_140:337
Length 66
Molecular weight 6775.5342
Aromaticity 0.0307692307692
Instability index 78.1353846154
Isoelectric point 6.36907958984
Runs 11
Runs residual 0.0189423076923
Runs probability 0.0288175876412
Amino acid sequence MSQASPHFTSSEDDTGLQPSHTRRVTCPNLLLAHVLQEACPAGKIALNTGTPVAAPVSSV
WHPGS
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLEELLHHHHHHHHHHHHLLLLLEEELLLLEEELLLLLE
ELLLL
PRMN -
PiMo -