Difference between revisions of "ENST00000438159.1"

Revision as of 06:07, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	ENST00000438159.1
Source	Gencode19
Same with	lnc-TIMP3-6:3
Classification	intronic(AS)
Length	2618 nt
Genomic location	chr22+:34121026..34146729
Exon number	10
Exons	34121026..34121087,34121598..34121742,34122102..34122183,34123477..34123618,34128242..34129671,34133550..34133769,34140116..34140315,34142402..34142444,34143657..34143811,34146591..34146729
Genome context
Sequence	000001 AGAGCATTCC CAGAAGCGGG GCCAGGGCAG TGCGCACAGT GAGGAGAGCA GGTGTGTGTG AGGTTGAAAC AAAACGTTCA 000080 000081 AAGCCCCCTC GGAAGCCCAT CCACAGGTGT GTGACTGTGA ACCGCATCGT AATCTCCTAG AAAGCAAGAA CATCAGGCTT 000160 000161 ACATTTTCCA CTTGCCTCTC ACGGCTCAGA GCTCTGCAGT ATATACATTG AGGAAACTGG GCCCTGAGAC ATTAACTTGC 000240 000241 CCAAAAGATC ACAGTGGGCA ACATTCTAGA GCACAGTGGA AGCCGACAGC AATGTCAGTG AAGATGGAAA ACAGAACGTG 000320 000321 GAGAGAGATG TAGCTTACTA GAGCCCTGTG GCTTCAATCC CCACCAGGAA TGTCGTTTAA GAGGAAGGTG ATCTAGCACA 000400 000401 AATTCACATT TGCTTGAGGA AGAATACAAA TAGAAGCAGC CTCGGGGAGC GGGCGGGGCT GGGGAATCCC TGGCCTCCCT 000480 000481 CCTTTCCTTC TGGCTGATCT TCTGCAGAAG ACCTCACAAA AGGGAGCTGA GGGGCCAGGA AGCCTGTGGA TGCCCTGAAG 000560 000561 AAGAATGAGT AGATCTGAAA GGGCAGTAGA ACAGAACCAG AATCCAGTGC AAAGGCCCTG GGGCAGGAGT TCGCAGGAGA 000640 000641 AGCGGGGAGA AGGAACCAGC CTATGATCCA GGAATGCAGT GAACAAGATT TGGGAAGTTG ACAGAGAATA TGAGGCCTCC 000720 000721 TCTCCAAACA GAAACTCCAG GACGCTTGGT TGAGTCACTG ACACATGCAC AGTGCTGAGC ATAGTACCAG ACACCAGAGT 000800 000801 CTGTGTTCCA GAAATGGAAG AATAGGTGAG TAATGAAAGT CTAAGTAAGC AAATTCTTCG CAAATGGGGA AAAGATTGAA 000880 000881 TGTATAGGGC TGCATATATT AGAAGCCCCC TGGAATCTCT GCATCCAGAA GATTGCAGTC ACCTTTGAAG CACTCACCAC 000960 000961 CAGAGTCTAC TCGCACACTC TCCTGTGGCA GCCGTTCACC TCGGCCCTTT TCCTAGGGAT TTGCCTTCAA GTCCCAGAAT 001040 001041 GGGCCTCAGG GTCTTTGCAT TCGCCTTTCT ATGAGTCTGA AACACCACCC ACCCCCTCAC CTGTGGGCAG GCAAAGCACC 001120 001121 TCCTGTGTTC ATGTCATCTC CTGTATCAAG CCCTTCCTGA TGACCAACTT GCAGCCGGGT GCCCTCTATC CATGCCTCCA 001200 001201 TGGCCGCCTA TGATAATGTC CCCCATATCA TTTACCATTC TGCTCATGAA TTTGGCTTCA TTCATCTCGC AACAACCCCA 001280 001281 GAGTATTAAG CCACTCGAGG GTGGAAGCTG GTGCTTTTAC CTCCGCACCT CTCATGCCCG ACAGAGTCCA TGGCAGAAGG 001360 001361 CCGGCTCTCA GATTTTAGCT GCATTCCTGA ATGAAGGAAT CAATAAAAGC CACACAGCAT TAAGTGGCAG ACTCTAGTAA 001440 001441 TTTAATTCCT GGTCCTGGGC TCTTTGATAT AAAATAACTC TTCTATTTTT AATACACCCC ACATTCCTGA AGATGACACT 001520 001521 ACTGCAAAAT TAAAGAAATG TGATGAACAG CTTACAACCT GCAACACACT CGGCAGCTCA AAATGACAAC ATTAATTTAA 001600 001601 TGAACTTAAA CACTGGTGAA CTTTTTAACA CATCCAGAGT TATTTACACT GGGAAATGCA TACTTAAGAC TGCCTGCCAA 001680 001681 AGAGACTCAA ATAGAGATGA CACATATATC TTTCACATGT TAATTTGCAT TTGAAACTTT GAGCTTTGAT ACAGGTTGGC 001760 001761 TTTTCTCTTT TGGAATGAAG AAATCAAGAG ACTAATTTTT TACCCATCCA TCCATCTATC CATCTATCCA TCCATCCAGC 001840 001841 CACATCTTTC CTAAGTGACA GGACATATCA CACACCAACC GTGTGCAAAG CACTCTACCT AAAGATCAGC GCTAACAGAG 001920 001921 GAATAAGCAG AGGCCTCCAG GAGCAAAGAG TGAAAAGTCT CCCAAGGAT

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>AGAGCATTCCCAGAAGCGGGGCCAGGGCAGTGCGCACAGTGAGGAGAGCAGGTGTGTGTGAGGTTGAAACAAAACGTTCAAAGCCCCCTCGGAAGCCCATCCACAGGTGTGTGACTGTGAACCGCATCGTAATCTCCTAGAAAGCAAGAACATCAGGCTTACATTTTCCACTTGCCTCTCACGGCTCAGAGCTCTGCAGTATATACATTGAGGAAACTGGGCCCTGAGACATTAACTTGCCCAAAAGATCACAGTGGGCAACATTCTAGAGCACAGTGGAAGCCGACAGCAATGTCAGTGAAGATGGAAAACAGAACGTGGAGAGAGATGTAGCTTACTAGAGCCCTGTGGCTTCAATCCCCACCAGGAATGTCGTTTAAGAGGAAGGTGATCTAGCACAAATTCACATTTGCTTGAGGAAGAATACAAATAGAAGCAGCCTCGGGGAGCGGGCGGGGCTGGGGAATCCCTGGCCTCCCTCCTTTCCTTCTGGCTGATCTTCTGCAGAAGACCTCACAAAAGGGAGCTGAGGGGCCAGGAAGCCTGTGGATGCCCTGAAGAAGAATGAGTAGATCTGAAAGGGCAGTAGAACAGAACCAGAATCCAGTGCAAAGGCCCTGGGGCAGGAGTTCGCAGGAGAAGCGGGGAGAAGGAACCAGCCTATGATCCAGGAATGCAGTGAACAAGATTTGGGAAGTTGACAGAGAATATGAGGCCTCCTCTCCAAACAGAAACTCCAGGACGCTTGGTTGAGTCACTGACACATGCACAGTGCTGAGCATAGTACCAGACACCAGAGTCTGTGTTCCAGAAATGGAAGAATAGGTGAGTAATGAAAGTCTAAGTAAGCAAATTCTTCGCAAATGGGGAAAAGATTGAATGTATAGGGCTGCATATATTAGAAGCCCCCTGGAATCTCTGCATCCAGAAGATTGCAGTCACCTTTGAAGCACTCACCACCAGAGTCTACTCGCACACTCTCCTGTGGCAGCCGTTCACCTCGGCCCTTTTCCTAGGGATTTGCCTTCAAGTCCCAGAATGGGCCTCAGGGTCTTTGCATTCGCCTTTCTATGAGTCTGAAACACCACCCACCCCCTCACCTGTGGGCAGGCAAAGCACCTCCTGTGTTCATGTCATCTCCTGTATCAAGCCCTTCCTGATGACCAACTTGCAGCCGGGTGCCCTCTATCCATGCCTCCATGGCCGCCTATGATAATGTCCCCCATATCATTTACCATTCTGCTCATGAATTTGGCTTCATTCATCTCGCAACAACCCCAGAGTATTAAGCCACTCGAGGGTGGAAGCTGGTGCTTTTACCTCCGCACCTCTCATGCCCGACAGAGTCCATGGCAGAAGGCCGGCTCTCAGATTTTAGCTGCATTCCTGAATGAAGGAATCAATAAAAGCCACACAGCATTAAGTGGCAGACTCTAGTAATTTAATTCCTGGTCCTGGGCTCTTTGATATAAAATAACTCTTCTATTTTTAATACACCCCACATTCCTGAAGATGACACTACTGCAAAATTAAAGAAATGTGATGAACAGCTTACAACCTGCAACACACTCGGCAGCTCAAAATGACAACATTAATTTAATGAACTTAAACACTGGTGAACTTTTTAACACATCCAGAGTTATTTACACTGGGAAATGCATACTTAAGACTGCCTGCCAAAGAGACTCAAATAGAGATGACACATATATCTTTCACATGTTAATTTGCATTTGAAACTTTGAGCTTTGATACAGGTTGGCTTTTCTCTTTTGGAATGAAGAAATCAAGAGACTAATTTTTTACCCATCCATCCATCTATCCATCTATCCATCCATCCAGCCACATCTTTCCTAAGTGACAGGACATATCACACACCAACCGTGTGCAAAGCACTCTACCTAAAGATCAGCGCTAACAGAGGAATAAGCAGAGGCCTCCAGGAGCAAAGAGTGAAAAGTCTCCCAAGGATTCAAGTACGGGGGAAGTGGGTGGAGCTTTCACCGTAGAATCTTTCCTGGAGAAAAAGCAAAGAGTGGGACAACAATGAAGGCATTAAAAATAACTGTCAAGTTGAAGAAAAAATCTGAAGTTTATCAATACATGATCTCCTCAAAAACGAAAGGAATAAAACAAGTATCTGCAATTTGCTGAGAACTTAATATGTGTCAGTTGCCTGCAAAACTCATCATTCTTTAGACTTTCAAATACATCTGTGAGGACGGTATTGTTGTTTCCACTTACACATGAGAAGGCAAGAGACAAGCCCACGGTCACCCAGCTGGTATTTTGCCAAAGACTAAGGATTCGGAGATGACTACGGAAAGGAAAACTAAGCTCCATGAGAAGAGGGGACTTGCCCATGTGGCTCAGGGCTCTATGCCCAGTGCCCTAGACAGTGCCTGACTGTGTGTGCGGAATGAATGAATAACCTTGGTGATCCACCCAATGGCACTGGCGCTCAGTGACCTCATCTGAAATGGAATAAGGATTTTATGAAAATGCATGTTTGTTGAATAACACAAAGGAGAATATTATCTAATGTGGCTTGGGGTCAATATCAAGCAGTAATATTGTTTTAGTATTAATTAGAGCCGTGTCATTGCAAGAGCTGGTAAGAA</dnaseq>|
 }}
-[[Category:Intronic(AS)]][[Category:ENSG00000224973.1]]
+[[Category:Intronic(AS)]][[Category:ENSG00000224973.1]][[Category:lnc-TIMP3-6]]