Difference between revisions of "NONHSAT139740"

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sequence = <dnaseq>CGGGGAAGGCCATGCATCATCTGCTACCCTGGAGGATCTGGAGCCAGTACCGAGAACTAGCAGTGGCCCTGCACTCAAGCTCCGCAATAATCAGTCAACTCAGTGAAAACATCAATTCACTGCTGAACCCCTGGCCCCAGAGCCCCCAGCAGGGCCCTCTGAGGTGGAGCAGCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTGGAGAGTGTGGGAAGACAGCTCCAGGCTGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAGACAGGAGGAGAGGCTGCAGGAACAGGAGAGGCTGCTGGACAAGGGGTAGGAGCTGCTGGAACAGGAGAGGCTTCAGGAGCAGGATGAGAGGCTGTGGCAGCAGGAGACTCTGTGGGAGCTGGAGAGGATGCTGGAGCTGGAGTGGGAAGCCCTCTACAAGCAGCAGGCCGAGCCCCACAGCAGCTTTGAGGAGCTGGTAATAATGAGAACAAGAGTGCACTGCAGTTGGAGCGGCAAGTAAAGGAGCTGAAGCTTGGAGAACCTGGAAGCTACCAGCCAGCAGAAACAGCAGCTAAAGCCCAGTTGAGCCTCATGGCTCTCCCTGGGGAAGGATATGGAGGAGGACATCTGGACAATGAGGAGGAGGCACCTCGGCCCATGCTGAACATTCCAGGGGACCTGGAGAGCCGGGAGGCCATGGTGGCATTTTTCAACTCCGCTGGAGCCAGTGCCCAGGAGGAGCAAAGCGTGTGCTGCCAGCCCCTGGCTCACCCAGTGGCCTCATCCCAGAAAAAGCCAGAGGCAGCGGCCCCAGCCCCAGAGACTGGGGGTGAATCTGTGTGTGGGGACACCCACTGGGCCCTGCAGGAGGCCATGGAGAAGCTGCAGCAACTTTATGGAAGGAGAAGATGGACCTGAAGGAGCTGGTGGAGAAACTAGAGCTTCAGTTCATCCACCTCTCAGGACAGACAGACACCATGAGAAAGTACATCAGCCAGGGGGCAGTGCCAAAGACGCAGCACTGGGAGAGGAGGACATCGTCAGGCTGGCCCAGGACCAGGAGG</dnaseq>|
 
sequence = <dnaseq>CGGGGAAGGCCATGCATCATCTGCTACCCTGGAGGATCTGGAGCCAGTACCGAGAACTAGCAGTGGCCCTGCACTCAAGCTCCGCAATAATCAGTCAACTCAGTGAAAACATCAATTCACTGCTGAACCCCTGGCCCCAGAGCCCCCAGCAGGGCCCTCTGAGGTGGAGCAGCTACAAGATGAGACCAACCACCTAAGGAAGGAGCTGGAGAGTGTGGGAAGACAGCTCCAGGCTGAGGTGGAAAACAATCAGATGTTGAGTCTCCTGAACAGGAGACAGGAGGAGAGGCTGCAGGAACAGGAGAGGCTGCTGGACAAGGGGTAGGAGCTGCTGGAACAGGAGAGGCTTCAGGAGCAGGATGAGAGGCTGTGGCAGCAGGAGACTCTGTGGGAGCTGGAGAGGATGCTGGAGCTGGAGTGGGAAGCCCTCTACAAGCAGCAGGCCGAGCCCCACAGCAGCTTTGAGGAGCTGGTAATAATGAGAACAAGAGTGCACTGCAGTTGGAGCGGCAAGTAAAGGAGCTGAAGCTTGGAGAACCTGGAAGCTACCAGCCAGCAGAAACAGCAGCTAAAGCCCAGTTGAGCCTCATGGCTCTCCCTGGGGAAGGATATGGAGGAGGACATCTGGACAATGAGGAGGAGGCACCTCGGCCCATGCTGAACATTCCAGGGGACCTGGAGAGCCGGGAGGCCATGGTGGCATTTTTCAACTCCGCTGGAGCCAGTGCCCAGGAGGAGCAAAGCGTGTGCTGCCAGCCCCTGGCTCACCCAGTGGCCTCATCCCAGAAAAAGCCAGAGGCAGCGGCCCCAGCCCCAGAGACTGGGGGTGAATCTGTGTGTGGGGACACCCACTGGGCCCTGCAGGAGGCCATGGAGAAGCTGCAGCAACTTTATGGAAGGAGAAGATGGACCTGAAGGAGCTGGTGGAGAAACTAGAGCTTCAGTTCATCCACCTCTCAGGACAGACAGACACCATGAGAAAGTACATCAGCCAGGGGGCAGTGCCAAAGACGCAGCACTGGGAGAGGAGGACATCGTCAGGCTGGCCCAGGACCAGGAGG</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG055955]]
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[[Category:Intergenic]][[Category:NONHSAG055955]][[Category:Transcripts]]

Latest revision as of 02:56, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT139740

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1061 nt

Genomic location

chrY-:26356114..26360978

Exon number

9

Exons

26356114..26356197,26356280..26356372,26356462..26356650,26356906..26356994,26357415..26357489,26358846..26358903,26359200..26359551,26360671..26360749,26360936..26360978

Genome context

Sequence
000001 CGGGGAAGGC CATGCATCAT CTGCTACCCT GGAGGATCTG GAGCCAGTAC CGAGAACTAG CAGTGGCCCT GCACTCAAGC 000080
000081 TCCGCAATAA TCAGTCAACT CAGTGAAAAC ATCAATTCAC TGCTGAACCC CTGGCCCCAG AGCCCCCAGC AGGGCCCTCT 000160
000161 GAGGTGGAGC AGCTACAAGA TGAGACCAAC CACCTAAGGA AGGAGCTGGA GAGTGTGGGA AGACAGCTCC AGGCTGAGGT 000240
000241 GGAAAACAAT CAGATGTTGA GTCTCCTGAA CAGGAGACAG GAGGAGAGGC TGCAGGAACA GGAGAGGCTG CTGGACAAGG 000320
000321 GGTAGGAGCT GCTGGAACAG GAGAGGCTTC AGGAGCAGGA TGAGAGGCTG TGGCAGCAGG AGACTCTGTG GGAGCTGGAG 000400
000401 AGGATGCTGG AGCTGGAGTG GGAAGCCCTC TACAAGCAGC AGGCCGAGCC CCACAGCAGC TTTGAGGAGC TGGTAATAAT 000480
000481 GAGAACAAGA GTGCACTGCA GTTGGAGCGG CAAGTAAAGG AGCTGAAGCT TGGAGAACCT GGAAGCTACC AGCCAGCAGA 000560
000561 AACAGCAGCT AAAGCCCAGT TGAGCCTCAT GGCTCTCCCT GGGGAAGGAT ATGGAGGAGG ACATCTGGAC AATGAGGAGG 000640
000641 AGGCACCTCG GCCCATGCTG AACATTCCAG GGGACCTGGA GAGCCGGGAG GCCATGGTGG CATTTTTCAA CTCCGCTGGA 000720
000721 GCCAGTGCCC AGGAGGAGCA AAGCGTGTGC TGCCAGCCCC TGGCTCACCC AGTGGCCTCA TCCCAGAAAA AGCCAGAGGC 000800
000801 AGCGGCCCCA GCCCCAGAGA CTGGGGGTGA ATCTGTGTGT GGGGACACCC ACTGGGCCCT GCAGGAGGCC ATGGAGAAGC 000880
000881 TGCAGCAACT TTATGGAAGG AGAAGATGGA CCTGAAGGAG CTGGTGGAGA AACTAGAGCT TCAGTTCATC CACCTCTCAG 000960
000961 GACAGACAGA CACCATGAGA AAGTACATCA GCCAGGGGGC AGTGCCAAAG ACGCAGCACT GGGAGAGGAG GACATCGTCA 001040
001041 GGCTGGCCCA GGACCAGGAG G
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Predicted Small Protein

Name NONHSAT139740_smProtein_11:196
Length 62
Molecular weight 7140.0873
Aromaticity 0.0983606557377
Instability index 86.7983606557
Isoelectric point 10.2560424805
Runs 7
Runs residual 0.0380629357452
Runs probability 0.0363388598683
Amino acid sequence MHHLLPWRIWSQYRELAVALHSSSAIISQLSENINSLLNPWPQSPQQGPLRWSSYKMRPT
T
Secondary structure LLLLLLHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHLLLLLLLLLLLLLEEELLLLLLL
L
PRMN -
PiMo -